Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350985.1

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 697

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 605 bp

atgctttatggatgtatagaatataattgctttgatggtcgatcttcttctgaatgttcttcaggtggtatttgtggaggtactctcttgcaatgtgccgtccgaaacaggcaagtggatgttgttcgtctacttctttctagtggagctgatatcttcaagactaatgatggacatcttcctctcgacattgctaaggaagaagggtaccacacaattgtccgtttatttgaggatcatctctttgctgaaaatgaaaaccggcggttggttatggcgaatagagcttcgctggaccttgcatatttgcccagcagttcgttttcttccaagccaagtcatgctgcagattcacatctactgccatctgctccaccactaccaccacagctagtggtgttggaggaagtatcaaacttccatgaggcatcttccagattgagcagaagctctagctatattccagaatggtcagattactggggcagaccaactccagatgcacctaacagttttacttcttctgtgccaagtcatggtgaaggttcacagccactaccatctccaccactaactgttccaccactagcagcacttcctgaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 zf-C3HC4_3

Protein Analysis

201

Amino Acids

21.82

Weight (kDa)

5.18

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	82, 209
AfiI	CCNNNNNNNGG	2 cut(s)	268, 536
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	5 cut(s)	149, 287, 391, 450, 456
AluI	AGCT	5 cut(s)	149, 287, 391, 450, 456
AlwI	GGATC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	344, 590
Asp718I	GGTACC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	4 cut(s)	29, 164, 373, 568
BceAI	ACGGC	1 cut(s)	83
BfaI	CTAG	4 cut(s)	141, 392, 453, 587
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	2 cut(s)	345, 591
BlsI	GCNGC	2 cut(s)	346, 592
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	490
BmsI	GCATC	2 cut(s)	437, 490
BmuI	ACTGGG	1 cut(s)	490
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	195
BsaBI	GATNNNNATC	2 cut(s)	174, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 536
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	2 cut(s)	98, 189
Bse8I	GATNNNNATC	2 cut(s)	174, 354
BseGI	GGATG	2 cut(s)	17, 124
BseJI	GATNNNNATC	2 cut(s)	174, 354
BseLI	CCNNNNNNNGG	2 cut(s)	268, 536
BseMI	GCAATG	2 cut(s)	98, 189
BseNI	ACTGG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	268, 536
Bsp143I	GATC	2 cut(s)	41, 235
BspACI	CCGC	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	98, 189
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	261
BssMI	GATC	2 cut(s)	41, 235
Bst4CI	ACNGT	2 cut(s)	512, 577
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	17, 124
BstKTI	GATC	2 cut(s)	44, 238
BstMBI	GATC	2 cut(s)	41, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	17, 124
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	81, 208
CviAII	CATG	3 cut(s)	341, 422, 536
CviJI	RGCY	7 cut(s)	149, 287, 334, 391, 450, 456, 553
CviKI_1	RGCY	7 cut(s)	149, 287, 334, 391, 450, 456, 553
CviQI	GTAC	2 cut(s)	81, 208
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	43, 237
DpnII	GATC	2 cut(s)	41, 235
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	154
FaeI	CATG	3 cut(s)	344, 425, 539
FaiI	YATR	9 cut(s)	9, 17, 24, 275, 304, 342, 423, 459, 537
FatI	CATG	3 cut(s)	340, 421, 535
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	345, 591
FokI	GGATG	2 cut(s)	24, 131
Fsp4HI	GCNGC	2 cut(s)	345, 591
FspBI	CTAG	4 cut(s)	141, 392, 453, 587
GluI	GCNGC	2 cut(s)	345, 591
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	480
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	3 cut(s)	344, 425, 539
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	131, 548
Hpy188I	TCNGA	3 cut(s)	52, 104, 475
Hpy188III	TCNNGA	6 cut(s)	160, 185, 435, 464, 497, 599
Hpy8I	GTNNAC	2 cut(s)	131, 548
HpyAV	CCTTC	2 cut(s)	197, 536
HpyCH4III	ACNGT	2 cut(s)	512, 577
HpyCH4V	TGCA	4 cut(s)	91, 302, 347, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	344, 425, 539
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	41, 235
LmnI	GCTCC	2 cut(s)	146, 376
LpnPI	CCDG	9 cut(s)	48, 94, 275, 278, 325, 448, 466, 477, 510
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	437, 490
MaeI	CTAG	4 cut(s)	141, 392, 453, 587
MalI	GATC	2 cut(s)	43, 237
MboI	GATC	2 cut(s)	41, 235
MboII	GAAGA	9 cut(s)	36, 39, 51, 148, 170, 212, 318, 423, 513
MfeI	CAATTG	1 cut(s)	216
MluCI	AATT	2 cut(s)	25, 216
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	5 cut(s)	71, 192, 226, 397, 418
MspI	CCGG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	2 cut(s)	41, 235
NlaIII	CATG	3 cut(s)	344, 425, 539
NlaIV	GGNNCC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	346, 592
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	209
PspPI	GGNCC	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	82, 209
RsaNI	GTAC	2 cut(s)	81, 208
SatI	GCNGC	2 cut(s)	345, 591
Sau3AI	GATC	2 cut(s)	41, 235
Sau96I	GGNCC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	437, 490
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	295
Sse9I	AATT	2 cut(s)	25, 216
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	4 cut(s)	141, 392, 453, 587
TaaI	ACNGT	2 cut(s)	512, 577
TaqI	TCGA	2 cut(s)	40, 186
TasI	AATT	2 cut(s)	25, 216
TfiI	GAWTC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	344, 590
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	4 cut(s)	141, 392, 453, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.