Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

62283717 .. 62287755

Gene Structure 4039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG437000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGGATACTAGTTCCCCCAATTCTTCTGCCGATGACCTAAAGAAACATGCAATGAGGGTTTTCAAGGCAGCGACCAAAGACTGTGCGGACATTGTCTTTGAAATAAAATTTGACATGATTCGGGACTACGAATCCCTTCATCAATTTGCAGTTGATTTGTTCAAATCTATAGCAAATACTGGCCTGGTTGACTTCCCCGAAGAGCTTAAGGCTCTCACTGAGGTGGCCATATTGTCCGATGTGGCTGTACACACCATTGTCATTGGGGAATACTTCACTGCCCGAAAGACCAAGGCTGCTCTCAAGGCCTTTCAGCACATGATAGCCACTGGTGTCGCCCCCAAATCCTGCAGTTACAGCTTGCTCATCACGGCCCTTGCATTAGACTTTTCTGATCCCAATTTTCTTGTGAATGCCAAGAAGTACTTTATGGAAATGTTGGTTAAGGGATTCAAGCCCAATTCTGGGTCCTACATGTTAGTGTTGGATGCCATTTCCTGCCGGGAGTCGGAGGGGAAGGCCAGGGAGTTCCTTGAACAGATCAAAGCCAAGGGGTTTGTCCCTGCACGACATTCTAGTAGTGGTATTCATATACGTCTTGCACAATGTTATTTGAAGGATAGGGGAATCACAGACGCGAGGTCGGCATCAGAAAGGGTGAGGCAGAGTGGTCGAAGGTGGGGATGGAGGCGGTGGAGGTGGAGCTTCGTGCAGAGATCTCCTCGCACTCCAAACCATACTTCTGGAGTTTGCAGTCTTACCGGAAATGGTAACCCTGACAGTGAAGGAGGCCGTCGCGTTTCTCGAGGTGAGATGGGTTGGCTTCTTCTTGATCCAAACTGGTGGGCTTCCATTAGATTACGTCTGCTCATCCATTGGATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

296

Amino Acids

33.31

Weight (kDa)

9.51

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	641, 801
AciI	CCGC	3 cut(s)	5, 89, 694
AclWI	GGATC	2 cut(s)	392, 830
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	2 cut(s)	252, 428
AfiI	CCNNNNNNNGG	3 cut(s)	467, 468, 511
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	6 cut(s)	67, 104, 166, 457, 539, 619
AhdI	GACNNNNNGTC	1 cut(s)	643
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	186, 524
AjuI	GAANNNNNNNTTGG	2 cut(s)	727, 759
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	208, 363, 708, 887
AluI	AGCT	4 cut(s)	208, 363, 708, 887
AlwI	GGATC	2 cut(s)	392, 830
Ama87I	CYCGRG	1 cut(s)	807
AoxI	GGCC	6 cut(s)	184, 228, 309, 375, 522, 793
ApeKI	GCWGC	2 cut(s)	71, 299
ApoI	RAATTY	1 cut(s)	110
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	376, 471
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	673, 824
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	83, 286
BccI	CCATC	2 cut(s)	681, 811
BceAI	ACGGC	2 cut(s)	390, 780
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	2 cut(s)	188, 526
BcnI	CCSGG	1 cut(s)	506
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	2 cut(s)	12, 579
BfmI	CTRYAG	2 cut(s)	171, 352
BfrI	CTTAAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	2 cut(s)	72, 300
BlsI	GCNGC	2 cut(s)	73, 301
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	3 cut(s)	188, 506, 526
Bme18I	GGWCC	1 cut(s)	471
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	376, 471
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	3 cut(s)	188, 506, 526
BmsI	GCATC	2 cut(s)	481, 659
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
BpmI	CTGGAG	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	294, 525, 552
BsaWI	WCCGGW	1 cut(s)	764
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 468, 511
Bse1I	ACTGG	3 cut(s)	187, 337, 848
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	188, 526
BseDI	CCNNGG	3 cut(s)	294, 525, 552
BseGI	GGATG	3 cut(s)	496, 692, 873
BseLI	CCNNNNNNNGG	3 cut(s)	467, 468, 511
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	3 cut(s)	187, 337, 848
BseRI	GAGGAG	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	83, 286
BsgI	GTGCAG	2 cut(s)	552, 734
Bsh1236I	CGCG	2 cut(s)	641, 801
BshFI	GGCC	6 cut(s)	186, 230, 311, 377, 524, 795
BsiHKCI	CYCGRG	1 cut(s)	807
BsiSI	CCGG	2 cut(s)	505, 765
BslFI	GGGAC	2 cut(s)	140, 548
BslI	CCNNNNNNNGG	3 cut(s)	467, 468, 511
BsmFI	GGGAC	2 cut(s)	140, 548
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	6 cut(s)	186, 230, 311, 377, 524, 795
BsoBI	CYCGRG	1 cut(s)	807
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	397, 543, 719, 835
BspACI	CCGC	3 cut(s)	5, 89, 694
BspANI	GGCC	6 cut(s)	186, 230, 311, 377, 524, 795
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	2 cut(s)	641, 801
BspLI	GGNNCC	1 cut(s)	472
BspMAI	CTGCAG	1 cut(s)	356
BspPI	GGATC	2 cut(s)	392, 830
BspQI	GCTCTTC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	187, 337, 848
BssECI	CCNNGG	3 cut(s)	294, 525, 552
BssMI	GATC	4 cut(s)	397, 543, 719, 835
BssT1I	CCWWGG	2 cut(s)	294, 552
Bst2UI	CCWGG	2 cut(s)	188, 526
Bst4CI	ACNGT	2 cut(s)	86, 785
Bst6I	CTCTTC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	773
BstF5I	GGATG	3 cut(s)	496, 692, 873
BstFNI	CGCG	2 cut(s)	641, 801
BstKTI	GATC	4 cut(s)	400, 546, 722, 838
BstMBI	GATC	4 cut(s)	397, 543, 719, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 360, 647
BstNI	CCWGG	2 cut(s)	188, 526
BstNSI	RCATGY	2 cut(s)	53, 481
BstPI	GGTNACC	1 cut(s)	773
BstSCI	CCNGG	3 cut(s)	186, 504, 524
BstSFI	CTRYAG	2 cut(s)	171, 352
BstUI	CGCG	2 cut(s)	641, 801
BstV1I	GCAGC	2 cut(s)	83, 286
BstX2I	RGATCY	1 cut(s)	719
BstXI	CCANNNNNNTGG	2 cut(s)	746, 846
BstYI	RGATCY	1 cut(s)	719
BsuRI	GGCC	6 cut(s)	186, 230, 311, 377, 524, 795
BtsCI	GGATG	3 cut(s)	496, 692, 873
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	4 cut(s)	219, 279, 330, 790
Cac8I	GCNNGC	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	376, 471
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	2 cut(s)	251, 427
CviAII	CATG	4 cut(s)	50, 118, 322, 478
CviQI	GTAC	2 cut(s)	251, 427
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	399, 545, 721, 837
DpnII	GATC	4 cut(s)	397, 543, 719, 835
DriI	GACNNNNNGTC	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	294, 552
Eco147I	AGGCCT	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	807
Eco91I	GGTNACC	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	471
EcoO65I	GGTNACC	1 cut(s)	773
EcoRII	CCWGG	2 cut(s)	186, 524
EcoT14I	CCWWGG	2 cut(s)	294, 552
ErhI	CCWWGG	2 cut(s)	294, 552
FaeI	CATG	4 cut(s)	53, 121, 325, 481
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	2 cut(s)	140, 548
FatI	CATG	4 cut(s)	49, 117, 321, 477
Fnu4HI	GCNGC	2 cut(s)	72, 300
FokI	GGATG	3 cut(s)	503, 699, 860
Fsp4HI	GCNGC	2 cut(s)	72, 300
FspBI	CTAG	2 cut(s)	12, 579
GluI	GCNGC	2 cut(s)	72, 300
GsuI	CTGGAG	1 cut(s)	768
HaeIII	GGCC	6 cut(s)	186, 230, 311, 377, 524, 795
HapII	CCGG	2 cut(s)	505, 765
HgaI	GACGC	1 cut(s)	647
Hin1II	CATG	4 cut(s)	53, 121, 325, 481
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	5 cut(s)	121, 134, 453, 509, 630
HpaII	CCGG	2 cut(s)	505, 765
HphI	GGTGA	2 cut(s)	673, 824
Hpy166II	GTNNAC	2 cut(s)	193, 253
Hpy188I	TCNGA	4 cut(s)	241, 397, 514, 655
Hpy188III	TCNNGA	4 cut(s)	125, 747, 807, 833
Hpy8I	GTNNAC	2 cut(s)	193, 253
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	5 cut(s)	149, 514, 613, 672, 782
HpyCH4III	ACNGT	2 cut(s)	86, 785
HpyCH4IV	ACGT	2 cut(s)	598, 865
HpyCH4V	TGCA	8 cut(s)	53, 152, 354, 383, 569, 605, 715, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 360, 647
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	2 cut(s)	598, 865
Hsp92II	CATG	4 cut(s)	53, 121, 325, 481
Kzo9I	GATC	4 cut(s)	397, 543, 719, 835
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	705
Lsp1109I	GCAGC	2 cut(s)	83, 286
LweI	GCATC	2 cut(s)	481, 659
MaeI	CTAG	2 cut(s)	12, 579
MaeII	ACGT	2 cut(s)	598, 865
MaeIII	GTNAC	2 cut(s)	356, 773
MalI	GATC	4 cut(s)	399, 545, 721, 837
MboI	GATC	4 cut(s)	397, 543, 719, 835
MboII	GAAGA	3 cut(s)	18, 215, 821
MflI	RGATCY	1 cut(s)	719
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	5 cut(s)	22, 110, 146, 403, 463
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	468, 492
Mox20I	TGGCCA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	2 cut(s)	210, 447
MslI	CAYNNNNRTG	2 cut(s)	224, 482
Msp20I	TGGCCA	1 cut(s)	230
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	505, 765
MspR9I	CCNGG	3 cut(s)	188, 506, 526
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	188, 526
MvnI	CGCG	2 cut(s)	641, 801
MwoI	GCNNNNNNNGC	3 cut(s)	308, 360, 647
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	397, 543, 719, 835
NlaIII	CATG	4 cut(s)	53, 121, 325, 481
NlaIV	GGNNCC	1 cut(s)	472
NspI	RCATGY	2 cut(s)	53, 481
OliI	CACNNNNGTG	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	807
PceI	AGGCCT	1 cut(s)	311
PciI	ACATGT	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	805
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	121, 134, 453, 630
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	73, 301
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	471
PscI	ACATGT	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	186, 524
PspEI	GGTNACC	1 cut(s)	773
PspGI	CCWGG	2 cut(s)	186, 524
PspN4I	GGNNCC	1 cut(s)	472
PspPI	GGNCC	2 cut(s)	376, 471
PspPPI	RGGWCCY	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	719
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	252, 428
RsaNI	GTAC	2 cut(s)	251, 427
RseI	CAYNNNNRTG	2 cut(s)	224, 482
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	210, 447
SatI	GCNGC	2 cut(s)	72, 300
Sau3AI	GATC	4 cut(s)	397, 543, 719, 835
Sau96I	GGNCC	2 cut(s)	376, 471
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	188, 506, 526
SfaNI	GCATC	2 cut(s)	481, 659
SfcI	CTRYAG	2 cut(s)	171, 352
Sfr274I	CTCGAG	1 cut(s)	807
SinI	GGWCC	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	807
SmiMI	CAYNNNNRTG	2 cut(s)	224, 482
SmlI	CTYRAG	3 cut(s)	209, 305, 807
SmoI	CTYRAG	3 cut(s)	209, 305, 807
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	5 cut(s)	22, 110, 146, 403, 463
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	3 cut(s)	5, 89, 694
SspMI	CTAG	2 cut(s)	12, 579
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	186, 504, 524
StyI	CCWWGG	2 cut(s)	294, 552
TaaI	ACNGT	2 cut(s)	86, 785
TaiI	ACGT	2 cut(s)	601, 868
TaqI	TCGA	2 cut(s)	676, 808
TasI	AATT	5 cut(s)	22, 110, 146, 403, 463
TatI	WGTACW	2 cut(s)	250, 426
TfiI	GAWTC	4 cut(s)	121, 134, 453, 630
Tru1I	TTAA	2 cut(s)	210, 447
Tru9I	TTAA	2 cut(s)	210, 447
TscAI	CASTG	4 cut(s)	226, 286, 337, 790
TseI	GCWGC	2 cut(s)	71, 299
TspDTI	ATGAA	2 cut(s)	131, 581
TspRI	CASTG	4 cut(s)	226, 286, 337, 790
Tth111I	GACNNNGTC	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	2 cut(s)	53, 481
XhoI	CTCGAG	1 cut(s)	807
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	2 cut(s)	12, 579
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.