Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

3546153 .. 3556458

Gene Structure 10306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGAGGGTGTTTTTCTGACGTGAAAGGTGGCAAGCAGGCCGTGGGTGGGGCCCATCATCAACAACAGAGACCCATCAACAGCGACGCTGACTCAAAAGACGCCGTTGAGCTCTTTAACCGCTCCGGAGGGGTTTATCCACTCTACACTCCGCTCGAGATGGATCGGAGAACTGAGTTACTTGGATTGACTTTGACGTCCAAGTCGGTCCAACTTGTTTCCGTTGCAATGCTTGAATGGATTCCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

83

Amino Acids

9.03

Weight (kDa)

5.58

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	196, 202
AatII	GACGTC	1 cut(s)	200
AccBSI	CCGCTC	2 cut(s)	123, 154
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	2 cut(s)	121, 152
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	102, 197
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	236
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	171
Ama87I	CYCGRG	2 cut(s)	155, 245
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	2 cut(s)	39, 51
ApaI	GGGCCC	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	51, 52, 208
AvaI	CYCGRG	2 cut(s)	155, 245
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	2 cut(s)	55, 114
Bbv12I	GWGCWC	1 cut(s)	114
BccI	CCATC	3 cut(s)	63, 83, 154
BceAI	ACGGC	2 cut(s)	26, 89
BcoDI	GTCTC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	2 cut(s)	155, 245
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	51, 52, 208
BmiI	GGNNCC	2 cut(s)	52, 53
BsaHI	GRCGYC	2 cut(s)	102, 197
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	234
BseAI	TCCGGA	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	41, 53
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	2 cut(s)	155, 245
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	41, 53
Bso31I	GGTCTC	1 cut(s)	64
BsoBI	CYCGRG	2 cut(s)	155, 245
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	55, 114
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	121, 152
BspANI	GGCC	2 cut(s)	41, 53
BspCNI	CTCAG	1 cut(s)	166
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	52, 53
BspPI	GGATC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	64
BsrBI	CCGCTC	2 cut(s)	123, 154
BsrDI	GCAATG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	2 cut(s)	102, 197
BstACI	GRCGYC	2 cut(s)	102, 197
BstC8I	GCNNGC	2 cut(s)	35, 39
BstDEI	CTNAG	1 cut(s)	174
BstDSI	CCRYGG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	41, 53
BtgI	CCRYGG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	35, 39
Cfr13I	GGNCC	3 cut(s)	51, 52, 208
CseI	GACGC	2 cut(s)	95, 110
CviJI	RGCY	3 cut(s)	41, 53, 112
CviKI_1	RGCY	3 cut(s)	41, 53, 112
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DrdI	GACNNNNNNGTC	2 cut(s)	196, 202
DseDI	GACNNNNNNGTC	2 cut(s)	196, 202
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	55, 114
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	112
Eco88I	CYCGRG	2 cut(s)	155, 245
EcoICRI	GAGCTC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	55, 114
FriOI	GRGCYC	2 cut(s)	55, 114
HaeIII	GGCC	2 cut(s)	41, 53
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	2 cut(s)	95, 110
Hin1I	GRCGYC	2 cut(s)	102, 197
HinfI	GANTC	2 cut(s)	92, 241
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	19, 168
Hpy188III	TCNNGA	3 cut(s)	126, 157, 245
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4IV	ACGT	2 cut(s)	21, 197
HpyCH4V	TGCA	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	21, 197
Hsp92I	GRCGYC	2 cut(s)	102, 197
Kpn2I	TCCGGA	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	2 cut(s)	23, 139
MaeII	ACGT	2 cut(s)	21, 197
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	1 cut(s)	165
MbiI	CCGCTC	2 cut(s)	123, 154
MboI	GATC	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	55, 114
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	52, 53
PaeR7I	CTCGAG	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	52, 53
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	51, 52, 208
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	51, 52, 208
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	55, 114
SetI	ASST	4 cut(s)	24, 31, 114, 200
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SsiI	CCGC	2 cut(s)	121, 152
SstI	GAGCTC	1 cut(s)	114
TaiI	ACGT	2 cut(s)	24, 200
TaqI	TCGA	1 cut(s)	156
TaqII	GACCGA	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.