Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Forward (+)

50496765 .. 50500071

Gene Structure 3307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAGGGTGTTTTTCCGACGTGAAAGGTGGCACGAGGCTGCGGGAGGTGGGGCCCATAATCTTCAACGAGAGGCCCATCAACGGGGACGCCGACTCAAACGACGCCGTTGCGCTCTTTAACCACTCCCGAGGGGTTTTTCCACTCTACACACCGCTTGAGAACCAAGCTAGAGTTTCATATCGATCAAAAGCAGAGAAGCCCAAGTCCGAGAACCTGACGGAGCTCGTTGCAACTTTGATCTCCAATTTGGACATCCGGTACAATAATCTCACCGGAAAATTGACTCAGCCGGACGTCGCAGCACCAAACGGCGCCGTTGCAGCCGACGTAGGTGCTGAGACCCTCGCCGTTGCGGCAGCGATTCCGAAATCGGACCAAGGTATCAGATCCCGATCTAGAGAGGCTGTAATCGCCGTTGAGGACCTCGACGACGGTATATTTGACGCGGTTCTAGAGGCCGAGGAGGAGACCGACGTCGGCAACGCTGTTGTTGAGAGAGAGGAAAGAGAAGAGAGAGAGGCTAGGGAGAAGAGAGGAGATAGAAGCAGTGGCATATATTGTAAATTATTGATTGTGCTTAATTTAAAATTGTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

200

Amino Acids

21.68

Weight (kDa)

4.82

Isoelectric Point (pI)

26.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	300, 480
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	1 cut(s)	449
AciI	CCGC	4 cut(s)	43, 155, 356, 449
AclWI	GGATC	1 cut(s)	384
AcyI	GRCGYC	5 cut(s)	90, 105, 297, 315, 477
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	83, 84
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	2 cut(s)	170, 226
AluI	AGCT	2 cut(s)	170, 226
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	335, 464
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	3 cut(s)	53, 74, 459
ApaI	GGGCCC	1 cut(s)	57
ApeKI	GCWGC	4 cut(s)	40, 302, 323, 359
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspLEI	GCGC	2 cut(s)	115, 317
AspS9I	GGNCC	5 cut(s)	53, 54, 75, 376, 424
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	2 cut(s)	376, 424
BaeGI	GKGCMC	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	57, 228
BauI	CACGAG	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	4 cut(s)	27, 314, 335, 371
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	5 cut(s)	92, 302, 328, 335, 401
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 317, 351
BcoDI	GTCTC	2 cut(s)	335, 464
BfaI	CTAG	4 cut(s)	171, 399, 455, 525
BfoI	RGCGCY	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	356
BisI	GCNGC	5 cut(s)	41, 303, 324, 357, 360
BlsI	GCNGC	5 cut(s)	42, 304, 325, 358, 361
Bme18I	GGWCC	2 cut(s)	376, 424
BmeT110I	CYCGRG	1 cut(s)	129
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	5 cut(s)	53, 54, 75, 376, 424
BmiI	GGNNCC	3 cut(s)	54, 55, 316
BoxI	GACNNNNGTC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	394
BsaHI	GRCGYC	5 cut(s)	90, 105, 297, 315, 477
BsaI	GGTCTC	2 cut(s)	335, 464
BsaJI	CCNNGG	3 cut(s)	130, 379, 462
BsaWI	WCCGGW	2 cut(s)	258, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 84
Bse8I	GATNNNNATC	1 cut(s)	394
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	130, 379, 462
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	83, 84
BseMII	CTCAG	2 cut(s)	302, 330
BseRI	GAGGAG	3 cut(s)	479, 482, 552
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	4 cut(s)	27, 314, 335, 371
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	55, 76, 461
BshNI	GGYRCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	259, 276, 293
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	83, 84
BsmAI	GTCTC	2 cut(s)	335, 464
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	55, 76, 461
Bso31I	GGTCTC	2 cut(s)	335, 464
BsoBI	CYCGRG	1 cut(s)	129
Bsp120I	GGGCCC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	57, 228
Bsp143I	GATC	4 cut(s)	185, 240, 389, 395
BspACI	CCGC	4 cut(s)	43, 155, 356, 449
BspANI	GGCC	3 cut(s)	55, 76, 461
BspCNI	CTCAG	2 cut(s)	301, 331
BspDI	ATCGAT	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	3 cut(s)	54, 55, 316
BspPI	GGATC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	2 cut(s)	335, 464
BssECI	CCNNGG	3 cut(s)	130, 379, 462
BssMI	GATC	4 cut(s)	185, 240, 389, 395
BssNI	GRCGYC	5 cut(s)	90, 105, 297, 315, 477
BssSI	CACGAG	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	2 cut(s)	507, 527
BstACI	GRCGYC	5 cut(s)	90, 105, 297, 315, 477
BstDEI	CTNAG	2 cut(s)	288, 339
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	115, 317
BstKTI	GATC	4 cut(s)	188, 243, 392, 398
BstMAI	GTCTC	2 cut(s)	335, 464
BstMBI	GATC	4 cut(s)	185, 240, 389, 395
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 356, 413
BstPAI	GACNNNNGTC	1 cut(s)	476
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	4 cut(s)	27, 314, 335, 371
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	55, 76, 461
BsuTUI	ATCGAT	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	556
CfoI	GCGC	2 cut(s)	115, 317
Cfr13I	GGNCC	5 cut(s)	53, 54, 75, 376, 424
ClaI	ATCGAT	1 cut(s)	184
CseI	GACGC	3 cut(s)	98, 113, 455
Csp6I	GTAC	1 cut(s)	262
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	288, 339
DinI	GGCGCC	1 cut(s)	316
DpnI	GATC	4 cut(s)	187, 242, 391, 397
DpnII	GATC	4 cut(s)	185, 240, 389, 395
DraI	TTTAAA	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	507, 527
EarI	CTCTTC	2 cut(s)	507, 527
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	2 cut(s)	57, 228
Eco31I	GGTCTC	2 cut(s)	335, 464
Eco47I	GGWCC	2 cut(s)	376, 424
Eco53kI	GAGCTC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	2 cut(s)	53, 424
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	2 cut(s)	57, 228
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	379
FaiI	YATR	5 cut(s)	59, 181, 440, 557, 559
FaqI	GGGAC	1 cut(s)	101
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	5 cut(s)	41, 303, 324, 357, 360
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	2 cut(s)	57, 228
Fsp4HI	GCNGC	5 cut(s)	41, 303, 324, 357, 360
FspBI	CTAG	4 cut(s)	171, 399, 455, 525
GlaI	GCGC	2 cut(s)	114, 316
GluI	GCNGC	5 cut(s)	41, 303, 324, 357, 360
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	55, 76, 461
HapII	CCGG	3 cut(s)	259, 276, 293
HgaI	GACGC	3 cut(s)	98, 113, 455
HhaI	GCGC	2 cut(s)	115, 317
Hin1I	GRCGYC	5 cut(s)	90, 105, 297, 315, 477
Hin6I	GCGC	2 cut(s)	113, 315
HinP1I	GCGC	2 cut(s)	113, 315
HinfI	GANTC	3 cut(s)	95, 286, 364
HpaII	CCGG	3 cut(s)	259, 276, 293
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	5 cut(s)	19, 211, 369, 376, 389
Hpy188III	TCNNGA	4 cut(s)	129, 393, 399, 455
Hpy99I	CGWCG	8 cut(s)	23, 107, 302, 332, 434, 437, 479, 482
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	4 cut(s)	21, 297, 330, 477
HpyCH4V	TGCA	2 cut(s)	233, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 356, 413
HpyF3I	CTNAG	2 cut(s)	288, 339
HpySE526I	ACGT	4 cut(s)	21, 297, 330, 477
Hsp92I	GRCGYC	5 cut(s)	90, 105, 297, 315, 477
HspAI	GCGC	2 cut(s)	113, 315
KasI	GGCGCC	1 cut(s)	314
Kzo9I	GATC	4 cut(s)	185, 240, 389, 395
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	4 cut(s)	230, 272, 289, 306
Lsp1109I	GCAGC	4 cut(s)	27, 314, 335, 371
MaeI	CTAG	4 cut(s)	171, 399, 455, 525
MaeII	ACGT	4 cut(s)	21, 297, 330, 477
MalI	GATC	4 cut(s)	187, 242, 391, 397
MboI	GATC	4 cut(s)	185, 240, 389, 395
MboII	GAAGA	3 cut(s)	55, 524, 544
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	57, 228
MluCI	AATT	5 cut(s)	247, 281, 566, 583, 590
Mly113I	GGCGCC	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	89, 280
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	3 cut(s)	120, 582, 587
MspI	CCGG	3 cut(s)	259, 276, 293
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	323, 356, 413
NarI	GGCGCC	1 cut(s)	315
NdeII	GATC	4 cut(s)	185, 240, 389, 395
NlaIV	GGNNCC	3 cut(s)	54, 55, 316
NmeAIII	GCCGAG	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	42, 304, 325, 358, 361
PleI	GAGTC	2 cut(s)	89, 280
PluTI	GGCGCC	1 cut(s)	318
PpsI	GAGTC	2 cut(s)	89, 280
PpuMI	RGGWCCY	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	54, 55, 316
PspOMI	GGGCCC	1 cut(s)	53
PspPI	GGNCC	5 cut(s)	53, 54, 75, 376, 424
PspPPI	RGGWCCY	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	120, 582, 587
SatI	GCNGC	5 cut(s)	41, 303, 324, 357, 360
Sau3AI	GATC	4 cut(s)	185, 240, 389, 395
Sau96I	GGNCC	5 cut(s)	53, 54, 75, 376, 424
SchI	GAGTC	2 cut(s)	89, 280
SduI	GDGCHC	2 cut(s)	57, 228
SfoI	GGCGCC	1 cut(s)	316
SinI	GGWCC	2 cut(s)	376, 424
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	5 cut(s)	247, 281, 566, 583, 590
SsiI	CCGC	4 cut(s)	43, 155, 356, 449
SspDI	GGCGCC	1 cut(s)	314
SspMI	CTAG	4 cut(s)	171, 399, 455, 525
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	4 cut(s)	24, 300, 333, 480
TaqI	TCGA	2 cut(s)	184, 429
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	5 cut(s)	247, 281, 566, 583, 590
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	120, 582, 587
Tru9I	TTAA	3 cut(s)	120, 582, 587
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	4 cut(s)	40, 302, 323, 359
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	2 cut(s)	376, 424
XbaI	TCTAGA	2 cut(s)	398, 454
XspI	CTAG	4 cut(s)	171, 399, 455, 525
ZraI	GACGTC	2 cut(s)	298, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.