Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000466.1

Orthogroup ID

OG0002274

Physical Location & Seq

Genomic Coordinates Reverse (-)

55206 .. 56291

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000466.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atgggagggtgtttttccaacgtgaaaggtggccagcaagccgtgggaggggtccgtcatcaagagaggcccatcaacagggacgctgactcaaacgacgccgtcgagctctttaaccactcccaaggggtttttccacaccatactccgctcgaggagccaagtcatgctgccgacccacagctactgccatctgctccaccaccaccaatacttcctggagaagaagaagaggatgattttgaagagtgccaaatggatatggcgattagggaccagttggatgaagcaccaaacttcagttttacttcttctgtgccaactcatggcgaagcttcacagccactaccgtctgctccaccactgggagtaattcctgaagaagaagacatcgatgatgaagaagcgcgtcaaatagctatggcgattatggtctctttagagcatgggcggaatgtaccaactggaactgcacagccactaccatctgctccaccactgggagtaattcctgaagatgaagacaccgatgatgaagaagcgcgtcaaatagctatggcgattatggtctctttggagcatgggcgggatgtaccaactggaactgcacagccactaccatctgctccaccacagggagtaattcctgaagatgaagacaccgacgatgaagaagcgcgtcaaatagctatggcgattatggtctctctggagcatgggctgaatgtaccaactggaactgcatctagcagtgatacacctttgcaacgaggtcaaactacaggttcacagtcactgtcatctgctcaacaaactccaaacggttctggtagcagcccagaatgccagtattgttatgatgctccgatcgaagcaacttgtgatccctgtgggcatttagcttgctttaactgctggctgaagattcaagcttctgacaacaagtgcccttgttgtcgggtagtgatcaagaagatcatcaagctctatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009987 GO:0010118 GO:0010941 GO:0016020 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0090332

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 Copine

Protein Analysis

331

Amino Acids

35.44

Weight (kDa)

4.25

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04801 FvH4_6g04803 FvH4_6g04820 FvH4_6g04830
malus_domestica	MD12G1228100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118871 RchiOBHm_Chr6g0301381
rosa_laevigata	RLG00000001612 RLG00000025524
rosa_multiflora	Rmu_co8350985.1_g000001 Rmu_sc0000466.1_g000013 Rmu_sc0003983.1_g000003 Rmu_sc0003983.1_g000004 Rmu_sc0008487.1_g000015 Rmu_sc0032758.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095170 Rroxscaffold_3G00268540 Rroxscaffold_6G00430300 Rroxscaffold_6G00430310 Rroxscaffold_6G00430330 Rroxscaffold_6G00430340
rosa_rugosa	Rorug02G0648100 Rorug02G0648200 Rorug02G0648300
rosa_samantha	Rh2DG653600 Rh3AG050500 Rh3AG050800 Rh3AG050900 Rh3AG051400 Rh3AG051500 Rh3BG051700 Rh3CG051800 Rh3DG052400 Rh3DG052600 Rh4AG163500 Rh4BG209700 Rh4DG159400 Rh5CG498300 Rh7BG086700 Rh7DG437000
rosa_wichuraiana	Rw0G005410 Rw3G003870 Rw3G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	3 cut(s)	409, 544, 679
AciI	CCGC	3 cut(s)	149, 451, 586
AclWI	GGATC	1 cut(s)	878
AcoI	YGGCCR	1 cut(s)	31
AcuI	CTGAAG	5 cut(s)	283, 399, 534, 669, 941
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	3 cut(s)	459, 594, 729
AfiI	CCNNNNNNNGG	6 cut(s)	48, 78, 326, 365, 500, 635
AgsI	TTSAA	2 cut(s)	245, 929
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	9 cut(s)	109, 184, 335, 419, 554, 689, 902, 932, 985
AluI	AGCT	9 cut(s)	109, 184, 335, 419, 554, 689, 902, 932, 985
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	439, 574, 709
AlwI	GGATC	1 cut(s)	878
AlwNI	CAGNNNCTG	2 cut(s)	187, 796
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	31, 68
ApeKI	GCWGC	2 cut(s)	170, 834
AspLEI	GCGC	3 cut(s)	409, 544, 679
AspS9I	GGNCC	3 cut(s)	52, 69, 274
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	52, 274
BaeGI	GKGCMC	1 cut(s)	950
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	3 cut(s)	393, 528, 663
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	157, 846
BccI	CCATC	4 cut(s)	80, 199, 493, 628
BceAI	ACGGC	2 cut(s)	26, 86
BciT130I	CCWGG	1 cut(s)	219
BclI	TGATCA	1 cut(s)	966
BcoDI	GTCTC	3 cut(s)	439, 574, 709
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	780
BisI	GCNGC	2 cut(s)	171, 835
BlsI	GCNGC	2 cut(s)	172, 836
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	52, 274
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	3 cut(s)	52, 69, 274
BmiI	GGNNCC	3 cut(s)	53, 159, 275
BmrFI	CCNGG	1 cut(s)	219
BmrI	ACTGGG	2 cut(s)	374, 509
BmsI	GCATC	2 cut(s)	752, 850
BmuI	ACTGGG	2 cut(s)	374, 509
BpiI	GAAGAC	3 cut(s)	393, 528, 663
BpmI	CTGGAG	2 cut(s)	240, 731
Bsa29I	ATCGAT	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	3 cut(s)	439, 574, 709
BsaJI	CCNNGG	2 cut(s)	42, 124
Bsc4I	CCNNNNNNNGG	6 cut(s)	48, 78, 326, 365, 500, 635
Bse1I	ACTGG	7 cut(s)	277, 369, 469, 504, 604, 739, 847
BseBI	CCWGG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	42, 124
BseGI	GGATG	3 cut(s)	241, 289, 595
BseLI	CCNNNNNNNGG	6 cut(s)	48, 78, 326, 365, 500, 635
BseNI	ACTGG	7 cut(s)	277, 369, 469, 504, 604, 739, 847
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	950
BseXI	GCAGC	2 cut(s)	157, 846
BsgI	GTGCAG	2 cut(s)	456, 591
Bsh1236I	CGCG	3 cut(s)	409, 544, 679
Bsh1285I	CGRYCG	1 cut(s)	870
BshFI	GGCC	2 cut(s)	33, 70
BshVI	ATCGAT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	152
BslFI	GGGAC	2 cut(s)	95, 287
BslI	CCNNNNNNNGG	6 cut(s)	48, 78, 326, 365, 500, 635
BsmAI	GTCTC	3 cut(s)	439, 574, 709
BsmFI	GGGAC	2 cut(s)	95, 287
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	2 cut(s)	33, 70
Bso31I	GGTCTC	3 cut(s)	439, 574, 709
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	111, 950
Bsp143I	GATC	4 cut(s)	867, 883, 966, 975
BspACI	CCGC	3 cut(s)	149, 451, 586
BspANI	GGCC	2 cut(s)	33, 70
BspDI	ATCGAT	1 cut(s)	393
BspFNI	CGCG	3 cut(s)	409, 544, 679
BspLI	GGNNCC	3 cut(s)	53, 159, 275
BspPI	GGATC	1 cut(s)	878
BspTNI	GGTCTC	3 cut(s)	439, 574, 709
BsrBI	CCGCTC	1 cut(s)	151
BsrI	ACTGG	7 cut(s)	277, 369, 469, 504, 604, 739, 847
BssECI	CCNNGG	2 cut(s)	42, 124
BssMI	GATC	4 cut(s)	867, 883, 966, 975
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	351, 792, 798, 824
Bst6I	CTCTTC	2 cut(s)	225, 240
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	35, 39, 904, 917
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	241, 289, 595
BstFNI	CGCG	3 cut(s)	409, 544, 679
BstHHI	GCGC	3 cut(s)	409, 544, 679
BstKTI	GATC	4 cut(s)	870, 886, 969, 978
BstMAI	GTCTC	3 cut(s)	439, 574, 709
BstMBI	GATC	4 cut(s)	867, 883, 966, 975
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 843, 912
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	780
BstSLI	GKGCMC	1 cut(s)	950
BstUI	CGCG	3 cut(s)	409, 544, 679
BstV1I	GCAGC	2 cut(s)	157, 846
BstV2I	GAAGAC	3 cut(s)	393, 528, 663
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	33, 70
BsuTUI	ATCGAT	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	241, 289, 595
BtsI	GCAGTG	1 cut(s)	757
BtsIMutI	CAGTG	4 cut(s)	362, 497, 757, 794
Cac8I	GCNNGC	4 cut(s)	35, 39, 904, 917
CaiI	CAGNNNCTG	2 cut(s)	187, 796
CfoI	GCGC	3 cut(s)	409, 544, 679
Cfr13I	GGNCC	3 cut(s)	52, 69, 274
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	5 cut(s)	92, 107, 398, 533, 668
Csp6I	GTAC	3 cut(s)	458, 593, 728
CviAII	CATG	5 cut(s)	167, 326, 446, 581, 716
CviQI	GTAC	3 cut(s)	458, 593, 728
DpnI	GATC	4 cut(s)	869, 885, 968, 977
DpnII	GATC	4 cut(s)	867, 883, 966, 975
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	225, 240
EarI	CTCTTC	2 cut(s)	225, 240
EciI	GGCGGA	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	3 cut(s)	439, 574, 709
Eco47I	GGWCC	2 cut(s)	52, 274
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	5 cut(s)	283, 399, 534, 669, 941
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	5 cut(s)	170, 329, 449, 584, 719
FaqI	GGGAC	2 cut(s)	95, 287
FatI	CATG	5 cut(s)	166, 325, 445, 580, 715
FauI	CCCGC	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	966
Fnu4HI	GCNGC	2 cut(s)	171, 835
FokI	GGATG	3 cut(s)	248, 296, 602
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	171, 835
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	3 cut(s)	408, 543, 678
GluI	GCNGC	2 cut(s)	171, 835
GsuI	CTGGAG	2 cut(s)	240, 731
HaeIII	GGCC	2 cut(s)	33, 70
HgaI	GACGC	5 cut(s)	92, 107, 398, 533, 668
HhaI	GCGC	3 cut(s)	409, 544, 679
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	5 cut(s)	170, 329, 449, 584, 719
Hin6I	GCGC	3 cut(s)	407, 542, 677
HinP1I	GCGC	3 cut(s)	407, 542, 677
HindIII	AAGCTT	2 cut(s)	333, 930
HinfI	GANTC	2 cut(s)	89, 925
Hpy166II	GTNNAC	1 cut(s)	788
Hpy188I	TCNGA	2 cut(s)	867, 937
Hpy188III	TCNNGA	6 cut(s)	62, 377, 512, 647, 710, 970
Hpy8I	GTNNAC	1 cut(s)	788
Hpy99I	CGWCG	3 cut(s)	101, 107, 668
HpyCH4III	ACNGT	4 cut(s)	351, 792, 798, 824
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	473, 608, 743, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 843, 912
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	170, 329, 449, 584, 719
HspAI	GCGC	3 cut(s)	407, 542, 677
Ksp22I	TGATCA	1 cut(s)	966
Kzo9I	GATC	4 cut(s)	867, 883, 966, 975
LmnI	GCTCC	8 cut(s)	157, 202, 361, 496, 577, 631, 712, 868
Lsp1109I	GCAGC	2 cut(s)	157, 846
LweI	GCATC	2 cut(s)	752, 850
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	792
MalI	GATC	4 cut(s)	869, 885, 968, 977
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	4 cut(s)	867, 883, 966, 975
MhlI	GDGCHC	2 cut(s)	111, 950
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	3 cut(s)	372, 507, 642
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	42, 261
MnlI	CCTC	5 cut(s)	41, 60, 148, 226, 764
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	2 cut(s)	114, 909
Msp20I	TGGCCA	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	3 cut(s)	409, 544, 679
MwoI	GCNNNNNNNGC	3 cut(s)	157, 843, 912
NdeII	GATC	4 cut(s)	867, 883, 966, 975
NlaIII	CATG	5 cut(s)	170, 329, 449, 584, 719
NlaIV	GGNNCC	3 cut(s)	53, 159, 275
NmuCI	GTSAC	1 cut(s)	792
PaeR7I	CTCGAG	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	848
PfeI	GAWTC	1 cut(s)	925
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	172, 836
Ple19I	CGATCG	1 cut(s)	870
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	53, 159, 275
PspPI	GGNCC	3 cut(s)	52, 69, 274
PspXI	VCTCGAGB	1 cut(s)	152
PstNI	CAGNNNCTG	2 cut(s)	187, 796
PsyI	GACNNNGTC	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	870
RsaI	GTAC	3 cut(s)	459, 594, 729
RsaNI	GTAC	3 cut(s)	458, 593, 728
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	114, 909
SatI	GCNGC	2 cut(s)	171, 835
Sau3AI	GATC	4 cut(s)	867, 883, 966, 975
Sau96I	GGNCC	3 cut(s)	52, 69, 274
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	111, 950
SfaNI	GCATC	2 cut(s)	752, 850
SfcI	CTRYAG	1 cut(s)	780
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	52, 274
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	372, 507, 642
SsiI	CCGC	3 cut(s)	149, 451, 586
SspMI	CTAG	1 cut(s)	747
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	4 cut(s)	351, 792, 798, 824
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	4 cut(s)	105, 153, 393, 870
TasI	AATT	3 cut(s)	372, 507, 642
TfiI	GAWTC	1 cut(s)	925
Tru1I	TTAA	2 cut(s)	114, 909
Tru9I	TTAA	2 cut(s)	114, 909
TscAI	CASTG	4 cut(s)	369, 504, 757, 801
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	2 cut(s)	170, 834
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	6 cut(s)	300, 414, 534, 549, 669, 684
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	4 cut(s)	369, 504, 757, 801
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	52, 274
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.