Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

28370304 .. 28372607

Gene Structure 2304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g36030.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGACTTGGGAGGATTGGAGCCTGCTCGTTTCGCCATGGAGGAGTTTAACAAGCGAAAGAATGCGCAACTGCAGTTTGTGAGAGTTGTCAAGTCACAAAGGCATCTGGTGCACACAGGAATTAGCAGCTTGTATATTTTAACAGTGGAGGCAGTTGATGCCGGTGTGGCTAGACTTTACCAGGCACGAGTTTCGGTTAATTTCATTGAAGGCATGACTTTGGAGTGGTTCTGTCTTCTTGTCGATGATGGGTGTCCTATAGCACTATTTGATCACCTAGAAATCTTCTTCCTTCCCAAGGACAATGAAGACAAAGCCGAGAATCAAATTCCTATGTGTAGAAAGCAGGGATGTGATTGTTTTCATACCTCACGGCCCAAACTGTGTCATATCAAAACTGCATATGACTTACCAAACAATGGCAAGATGCTAAAAATATTTGGACGTTGGGCCGTGAAAACGTATAACAAGGAAAAGAATGCTCAACTGGAGTTTATGAGAGTGGTGAACGGAACCAGGAGCTGGTTAATGGGCATGGTTTTTTTAACACTGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTATGCCAGATGCCATTGATATCAAGGATCCCGATACCAAGCTCAATTTGTTTGGCCATGTTGATGATAATGGCAGATTGTCAATACTAATTGATAAGAGGCATGAAAAAGTAACAATAAAGTGTTCAATTCCCTATGAACCGGAAGATTTCTGCCGTTACAAGGATCGTAACCTGTTCATTCCTTCCACTATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

266

Amino Acids

30.48

Weight (kDa)

6.66

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	82 - 138	7.9e-07	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	66
AccB7I	CCANNNNNTGG	2 cut(s)	419, 522
AclWI	GGATC	3 cut(s)	620, 633, 771
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	2 cut(s)	327, 579
AfiI	CCNNNNNNNGG	4 cut(s)	298, 419, 522, 760
AgsI	TTSAA	2 cut(s)	209, 726
AjnI	CCWGG	2 cut(s)	180, 515
AluBI	AGCT	3 cut(s)	129, 522, 640
AluI	AGCT	3 cut(s)	129, 522, 640
Alw21I	GWGCWC	1 cut(s)	114
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	620, 633, 771
AlwNI	CAGNNNCTG	2 cut(s)	522, 566
AoxI	GGCC	3 cut(s)	374, 450, 652
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	126, 557
ApoI	RAATTY	2 cut(s)	327, 579
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	375, 450
AsuHPI	GGTGA	2 cut(s)	266, 517
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	654
BamHI	GGATCC	1 cut(s)	625
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	2 cut(s)	227, 315
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	138, 569
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	3 cut(s)	389, 437, 738
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BciT130I	CCWGG	2 cut(s)	182, 517
BclI	TGATCA	1 cut(s)	271
BfaI	CTAG	2 cut(s)	171, 278
BfmI	CTRYAG	2 cut(s)	71, 258
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	127, 558
BlsI	GCNGC	2 cut(s)	128, 559
Bme1390I	CCNGG	2 cut(s)	182, 517
BmgT120I	GGNCC	2 cut(s)	375, 450
BmiI	GGNNCC	3 cut(s)	21, 514, 627
BmrFI	CCNGG	2 cut(s)	182, 517
BmsI	GCATC	5 cut(s)	112, 148, 417, 553, 598
BpiI	GAAGAC	2 cut(s)	227, 315
BpmI	CTGGAG	2 cut(s)	509, 572
BsaJI	CCNNGG	2 cut(s)	36, 297
BsaWI	WCCGGW	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 419, 522, 760
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	492, 555
BseBI	CCWGG	2 cut(s)	182, 517
BseDI	CCNNGG	2 cut(s)	36, 297
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	4 cut(s)	298, 419, 522, 760
BseNI	ACTGG	2 cut(s)	492, 555
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	138, 569
BshFI	GGCC	3 cut(s)	376, 452, 654
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	162, 740
BslI	CCNNNNNNNGG	4 cut(s)	298, 419, 522, 760
BsmI	GAATGC	2 cut(s)	67, 484
BsnI	GGCC	3 cut(s)	376, 452, 654
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	271, 625, 763
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	3 cut(s)	376, 452, 654
BspLI	GGNNCC	3 cut(s)	21, 514, 627
BspMAI	CTGCAG	1 cut(s)	75
BspPI	GGATC	3 cut(s)	620, 633, 771
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	492, 555
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	36, 297
BssMI	GATC	3 cut(s)	271, 625, 763
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	36, 297
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	182, 517
Bst4CI	ACNGT	3 cut(s)	145, 384, 597
BstAPI	GCANNNNNTGC	3 cut(s)	109, 158, 563
BstC8I	GCNNGC	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	3 cut(s)	274, 628, 766
BstMBI	GATC	3 cut(s)	271, 625, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 109, 158, 167, 563
BstNI	CCWGG	2 cut(s)	182, 517
BstSCI	CCNGG	2 cut(s)	180, 515
BstSFI	CTRYAG	2 cut(s)	71, 258
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	138, 569
BstV2I	GAAGAC	2 cut(s)	227, 315
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	376, 452, 654
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	150, 548
Cac8I	GCNNGC	1 cut(s)	24
CaiI	CAGNNNCTG	2 cut(s)	522, 566
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	375, 450
CviAII	CATG	5 cut(s)	37, 214, 535, 656, 701
CviJI	RGCY	9 cut(s)	22, 129, 170, 317, 376, 452, 522, 640, 654
CviKI_1	RGCY	9 cut(s)	22, 129, 170, 317, 376, 452, 522, 640, 654
DpnI	GATC	3 cut(s)	273, 627, 765
DpnII	GATC	3 cut(s)	271, 625, 763
EaeI	YGGCCR	1 cut(s)	652
Eco130I	CCWWGG	2 cut(s)	36, 297
Eco32I	GATATC	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	180, 515
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	36, 297
ErhI	CCWWGG	2 cut(s)	36, 297
FaeI	CATG	5 cut(s)	40, 217, 538, 659, 704
FatI	CATG	5 cut(s)	36, 213, 534, 655, 700
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	127, 558
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	2 cut(s)	127, 558
FspBI	CTAG	2 cut(s)	171, 278
FspI	TGCGCA	1 cut(s)	66
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	127, 558
GsuI	CTGGAG	2 cut(s)	509, 572
HaeIII	GGCC	3 cut(s)	376, 452, 654
HapII	CCGG	2 cut(s)	162, 740
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	40, 217, 538, 659, 704
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	162, 740
HphI	GGTGA	2 cut(s)	266, 517
Hpy166II	GTNNAC	2 cut(s)	112, 508
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	2 cut(s)	112, 508
HpyAV	CCTTC	3 cut(s)	203, 302, 792
HpyCH4III	ACNGT	3 cut(s)	145, 384, 597
HpyCH4IV	ACGT	2 cut(s)	445, 461
HpyCH4V	TGCA	3 cut(s)	73, 112, 401
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 109, 158, 167, 563
HpySE526I	ACGT	2 cut(s)	445, 461
Hsp92II	CATG	5 cut(s)	40, 217, 538, 659, 704
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	271, 625, 763
LmnI	GCTCC	2 cut(s)	19, 519
Lsp1109I	GCAGC	2 cut(s)	138, 569
LweI	GCATC	5 cut(s)	112, 148, 417, 553, 598
MaeI	CTAG	2 cut(s)	171, 278
MaeII	ACGT	2 cut(s)	445, 461
MaeIII	GTNAC	4 cut(s)	93, 709, 755, 767
MalI	GATC	3 cut(s)	273, 627, 765
MboI	GATC	3 cut(s)	271, 625, 763
MboII	GAAGA	5 cut(s)	227, 277, 280, 320, 755
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	7 cut(s)	120, 199, 327, 579, 643, 687, 726
MluNI	TGGCCA	1 cut(s)	654
MnlI	CCTC	6 cut(s)	5, 34, 142, 379, 547, 690
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	6 cut(s)	48, 140, 198, 527, 545, 796
MslI	CAYNNNNRTG	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	654
MspI	CCGG	2 cut(s)	162, 740
MspR9I	CCNGG	2 cut(s)	182, 517
Mva1269I	GAATGC	2 cut(s)	67, 484
MvaI	CCWGG	2 cut(s)	182, 517
MwoI	GCNNNNNNNGC	5 cut(s)	32, 109, 158, 167, 563
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	271, 625, 763
NlaIII	CATG	5 cut(s)	40, 217, 538, 659, 704
NlaIV	GGNNCC	3 cut(s)	21, 514, 627
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	93
NsbI	TGCGCA	1 cut(s)	66
PctI	GAATGC	2 cut(s)	67, 484
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	2 cut(s)	419, 522
PkrI	GCNGC	2 cut(s)	128, 559
Psp6I	CCWGG	2 cut(s)	180, 515
PspGI	CCWGG	2 cut(s)	180, 515
PspN4I	GGNNCC	3 cut(s)	21, 514, 627
PspPI	GGNCC	2 cut(s)	375, 450
PstI	CTGCAG	1 cut(s)	75
PstNI	CAGNNNCTG	2 cut(s)	522, 566
PsuI	RGATCY	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	660
SaqAI	TTAA	6 cut(s)	48, 140, 198, 527, 545, 796
SatI	GCNGC	2 cut(s)	127, 558
Sau3AI	GATC	3 cut(s)	271, 625, 763
Sau96I	GGNCC	2 cut(s)	375, 450
ScrFI	CCNGG	2 cut(s)	182, 517
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	8 cut(s)	131, 279, 371, 448, 464, 524, 642, 774
SfaNI	GCATC	5 cut(s)	112, 148, 417, 553, 598
SfcI	CTRYAG	2 cut(s)	71, 258
SmiMI	CAYNNNNRTG	1 cut(s)	660
Sse9I	AATT	7 cut(s)	120, 199, 327, 579, 643, 687, 726
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	2 cut(s)	171, 278
StyD4I	CCNGG	2 cut(s)	180, 515
StyI	CCWWGG	2 cut(s)	36, 297
TaaI	ACNGT	3 cut(s)	145, 384, 597
TaiI	ACGT	2 cut(s)	448, 464
TaqI	TCGA	1 cut(s)	243
TasI	AATT	7 cut(s)	120, 199, 327, 579, 643, 687, 726
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	6 cut(s)	48, 140, 198, 527, 545, 796
Tru9I	TTAA	6 cut(s)	48, 140, 198, 527, 545, 796
TscAI	CASTG	2 cut(s)	150, 555
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	2 cut(s)	126, 557
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	7 cut(s)	193, 321, 353, 590, 717, 750, 766
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	150, 555
Van91I	CCANNNNNTGG	2 cut(s)	419, 522
VneI	GTGCAC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	327, 579
XspI	CTAG	2 cut(s)	171, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.