Rroxscaffold_1G00006450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002275
Physical Location & Seq
Forward (+)
8510202 .. 8511754
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006450.1

Sequence Viewer

Length: 678 bp
ATGGCCATGGCGATTCGTTCTGCACTCGAAAAGATGGCGACTAACTCTATTCACAACAACAGAAGTGGAATGCTGACGCTTAGGGCTTTTGCGACCTCTGCCATCGACAAAAAACCCAAACCCGAAAACGACGCCGTTTCGGGGTTTCCCGCTGGTCATTACTTCCGCCACCGATTCGATTATTCAAGCCATAAAACCAAAAAAAACAAGAGCCTAAGGTGTTTGATATTACATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCATCGAAGAGTTCAACAGGCAAAAGTTGTTTCAAGCAAGGAATTAGCAGCCTATGTTATAACATTGGAGGCAGTTGATGCCGGCGTGGCTAAACTTTACCAGGCAGAAGTTTCGGCAACTGAGGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGTTCTGCCAGGTAACAAGAAGATTAAGCATCCCAATTCCTGGCTCAATTTGTTTGGCCATGTCGATGATAATGGGACATTGTCAATACTAATTGATAAGAGGCATGAAGAATGCAGAAAAGAGATTTTGGAATCTGAAGATATATTAATATTTTTACAGCAGTCCAGCAAGGTTACTGCCGTTACAAGGATGTTGATCAATTCATTCCAACCTTTTTGTGAGATATTGAAAACAAGAGCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.47

Weight (kDa)

9.74

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 471
AciI CCGC 2 cut(s) 150, 166
AcoI YGGCCR 2 cut(s) 3, 487
AcsI RAATTY 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 588
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 3 cut(s) 141, 471, 618
AgsI TTSAA 4 cut(s) 186, 281, 300, 661
AjnI CCWGG 3 cut(s) 366, 439, 470
AluBI AGCT 1 cut(s) 671
AluI AGCT 1 cut(s) 671
AoxI GGCC 2 cut(s) 3, 487
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 405
AseI ATTAAT 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 215
BalI TGGCCA 2 cut(s) 5, 489
BbvI GCAGC 1 cut(s) 326
BccI CCATC 3 cut(s) 28, 110, 276
BceAI ACGGC 2 cut(s) 119, 596
BcgI CGANNNNNNTGC 2 cut(s) 360, 394
BciT130I CCWGG 3 cut(s) 368, 441, 472
BclI TGATCA 1 cut(s) 627
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 368, 441, 472
BmrFI CCNGG 3 cut(s) 368, 441, 472
BmsI GCATC 2 cut(s) 334, 469
Bpu10I CCTNAGC 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 471, 618
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 431
Bse21I CCTNAGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 626
BseBI CCWGG 3 cut(s) 368, 441, 472
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 460, 627
BseJI GATNNNNATC 1 cut(s) 626
BseLI CCNNNNNNNGG 3 cut(s) 141, 471, 618
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 431
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 6
BshFI GGCC 2 cut(s) 5, 489
BsiSI CCGG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 3 cut(s) 141, 471, 618
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 2 cut(s) 75, 548
BsnI GGCC 2 cut(s) 5, 489
Bsp143I GATC 1 cut(s) 627
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 150, 166
BspANI GGCC 2 cut(s) 5, 489
BspCNI CTCAG 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 627
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 3 cut(s) 368, 441, 472
Bst4CI ACNGT 1 cut(s) 423
Bst6I CTCTTC 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 256, 349
BstDEI CTNAG 3 cut(s) 80, 215, 387
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 460, 627
BstKTI GATC 1 cut(s) 630
BstMBI GATC 1 cut(s) 627
BstMWI GCNNNNNNNGC 6 cut(s) 98, 264, 344, 353, 389, 436
BstNI CCWGG 3 cut(s) 368, 441, 472
BstSCI CCNGG 3 cut(s) 366, 439, 470
BstV1I GCAGC 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 5, 489
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 460, 627
Cac8I GCNNGC 2 cut(s) 256, 349
Cfr10I RCCGGY 1 cut(s) 347
CseI GACGC 2 cut(s) 85, 140
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 4 cut(s) 7, 233, 491, 536
DdeI CTNAG 3 cut(s) 80, 215, 387
DpnI GATC 1 cut(s) 629
DpnII GATC 1 cut(s) 627
EaeI YGGCCR 2 cut(s) 3, 487
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
EciI GGCGGA 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 588
Eco81I CCTNAGG 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 366, 439, 470
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 10, 236, 494, 539
FaiI YATR 8 cut(s) 8, 192, 234, 321, 326, 492, 537, 575
FaqI GGGAC 1 cut(s) 520
FatI CATG 4 cut(s) 6, 232, 490, 535
FauI CCCGC 1 cut(s) 157
FbaI TGATCA 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 2 cut(s) 447, 634
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 2 cut(s) 5, 489
HapII CCGG 1 cut(s) 348
HgaI GACGC 2 cut(s) 85, 140
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 4 cut(s) 10, 236, 494, 539
HinfI GANTC 3 cut(s) 13, 174, 563
HpaII CCGG 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 568
Hpy99I CGWCG 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4V TGCA 2 cut(s) 23, 546
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 264, 344, 353, 389, 436
HpyF3I CTNAG 3 cut(s) 80, 215, 387
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 4 cut(s) 10, 236, 494, 539
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 627
Kzo9I GATC 1 cut(s) 627
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 2 cut(s) 334, 469
MaeIII GTNAC 3 cut(s) 443, 604, 613
MalI GATC 1 cut(s) 629
MboI GATC 1 cut(s) 627
MboII GAAGA 4 cut(s) 285, 463, 551, 581
MlsI TGGCCA 2 cut(s) 5, 489
MluCI AATT 6 cut(s) 308, 405, 466, 478, 522, 631
MluNI TGGCCA 2 cut(s) 5, 489
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 5 cut(s) 106, 237, 328, 382, 525
Mox20I TGGCCA 2 cut(s) 5, 489
MroNI GCCGGC 1 cut(s) 347
MscI TGGCCA 2 cut(s) 5, 489
MseI TTAA 2 cut(s) 456, 578
MslI CAYNNNNRTG 1 cut(s) 495
Msp20I TGGCCA 2 cut(s) 5, 489
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 3 cut(s) 368, 441, 472
Mva1269I GAATGC 2 cut(s) 75, 548
MvaI CCWGG 3 cut(s) 368, 441, 472
MwoI GCNNNNNNNGC 6 cut(s) 98, 264, 344, 353, 389, 436
NaeI GCCGGC 1 cut(s) 349
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 627
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 4 cut(s) 10, 236, 494, 539
PctI GAATGC 2 cut(s) 75, 548
PdiI GCCGGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 13, 174, 563
PflFI GACNNNGTC 1 cut(s) 511
PflMI CCANNNNNTGG 1 cut(s) 471
PkrI GCNGC 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 578
PsiI TTATAA 1 cut(s) 326
Psp6I CCWGG 3 cut(s) 366, 439, 470
PspGI CCWGG 3 cut(s) 366, 439, 470
PsyI GACNNNGTC 1 cut(s) 511
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 2 cut(s) 456, 578
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 627
ScrFI CCNGG 3 cut(s) 368, 441, 472
SetI ASST 6 cut(s) 98, 221, 445, 606, 646, 673
SfaNI GCATC 2 cut(s) 334, 469
SmiMI CAYNNNNRTG 1 cut(s) 495
Sse9I AATT 6 cut(s) 308, 405, 466, 478, 522, 631
SsiI CCGC 2 cut(s) 150, 166
SspI AATATT 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 366, 439, 470
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 423
TaqI TCGA 5 cut(s) 27, 105, 177, 271, 495
TasI AATT 6 cut(s) 308, 405, 466, 478, 522, 631
TfiI GAWTC 3 cut(s) 13, 174, 563
Tru1I TTAA 2 cut(s) 456, 578
Tru9I TTAA 2 cut(s) 456, 578
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 416, 552, 624
Tth111I GACNNNGTC 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 471
VspI ATTAAT 1 cut(s) 578
XapI RAATTY 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.