Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

60152627 .. 60154665

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTATGGCGATTCGTTCTGCACTCGCGAAGCTGGCGAGTAACTCTATTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCTATCGACAAAAACCTCGATCGCCAAAGCCGGGCCATTTCGGGGTTTCCTGCCGGTCGTTACTTCCGTCACCGATTCGATTATGGAAGCTATAAAAGCAAAAAAAAGGAGCTTAAGGTATTTGATTATTATATGGATTTAGGAGGATTAGAACCTGCCCGTTTCGCCACGGAAGAGTTCAACAAGCGAAAGAAAATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTTTATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCGAGCAAAAGTTTCGGTAAATTTCACCGATGGCATGTTTTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGTCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAAGGCGGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCAAATAACTTATGTATCAAACTATGTCGTATCAAACCTGCATATGACTTATCAAATAATGGCAAGATGCAACGATTTGGACGATGGGCTGTGAAAATGTATAACAAGGAAAAGAATGCTAAACTGCAGTTTAAGAGAGTGGTGAGCGGAAGCAAGCTGTGGTGGGAGGATTCTTTTTATCTAACATTGGAGGCAGCAGATGCTGGTGTGATGAAAATTTATCAAGCAGAACTGTTTTTGCCAGATGACGATAATATTAAGCATCCCAATTCCAAGCTCATTTTGTTTGGCCATGTTGATGGTAATGGGGGATTGTCGATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGGATCTGAAGATATTATTACAGCATACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGTTTTCATTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

345

Amino Acids

39.53

Weight (kDa)

9.19

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	253, 628
AccBSI	CCGCTC	1 cut(s)	729
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	539, 729
AclWI	GGATC	1 cut(s)	955
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	4 cut(s)	69, 421, 549, 798
AcuI	CTGAAG	1 cut(s)	972
AfiI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	271, 585
AluBI	AGCT	5 cut(s)	34, 180, 202, 739, 859
AluI	AGCT	5 cut(s)	34, 180, 202, 739, 859
Alw21I	GWGCWC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	955
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	123, 871
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	348, 776
ApoI	RAATTY	4 cut(s)	69, 421, 549, 798
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	152, 418, 488, 736
BaeGI	GKGCMC	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	580, 613
BalI	TGGCCA	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	360, 788
BccI	CCATC	4 cut(s)	425, 464, 660, 875
BceAI	ACGGC	1 cut(s)	972
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	3 cut(s)	293, 480, 707
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	2 cut(s)	253, 628
BisI	GCNGC	2 cut(s)	349, 777
BlsI	GCNGC	2 cut(s)	350, 778
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
BpiI	GAAGAC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 132, 994
Bse118I	RCCGGY	2 cut(s)	143, 383
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	844
BseLI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BseMII	CTCAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	360, 788
BsgI	GTGCAG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	2 cut(s)	112, 148
BshFI	GGCC	2 cut(s)	125, 873
BsiEI	CGRYCG	2 cut(s)	112, 148
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	121, 144, 384
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	2 cut(s)	703, 932
BsnI	GGCC	2 cut(s)	125, 873
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	109, 493, 947
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	2 cut(s)	539, 729
BspANI	GGCC	2 cut(s)	125, 873
BspCNI	CTCAG	1 cut(s)	529
BspFNI	CGCG	1 cut(s)	29
BspMAI	CTGCAG	2 cut(s)	297, 711
BspMI	ACCTGC	2 cut(s)	253, 628
BspPI	GGATC	1 cut(s)	955
BspTI	CTTAAG	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	729
BsrFI	RCCGGY	2 cut(s)	143, 383
BssAI	RCCGGY	2 cut(s)	143, 383
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	109, 493, 947
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	380, 782
BstC8I	GCNNGC	2 cut(s)	36, 737
BstDEI	CTNAG	2 cut(s)	80, 516
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	844
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	3 cut(s)	112, 496, 950
BstMBI	GATC	3 cut(s)	109, 493, 947
BstMCI	CGRYCG	2 cut(s)	112, 148
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	3 cut(s)	293, 480, 707
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	360, 788
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	947
BstXI	CCANNNNNNTGG	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	947
BsuRI	GGCC	2 cut(s)	125, 873
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	844
BtuMI	TCGCGA	1 cut(s)	29
BveI	ACCTGC	2 cut(s)	253, 628
Cac8I	GCNNGC	2 cut(s)	36, 737
CaiI	CAGNNNCTG	1 cut(s)	785
Cfr10I	RCCGGY	2 cut(s)	143, 383
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	3 cut(s)	436, 875, 920
DdeI	CTNAG	2 cut(s)	80, 516
DpnI	GATC	3 cut(s)	111, 495, 949
DpnII	GATC	3 cut(s)	109, 493, 947
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	69
FaeI	CATG	3 cut(s)	439, 878, 923
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	3 cut(s)	435, 874, 919
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	349, 777
FokI	GGATG	1 cut(s)	831
Fsp4HI	GCNGC	2 cut(s)	349, 777
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	2 cut(s)	349, 777
HaeIII	GGCC	2 cut(s)	125, 873
HapII	CCGG	3 cut(s)	121, 144, 384
Hin1II	CATG	3 cut(s)	439, 878, 923
HinfI	GANTC	5 cut(s)	13, 165, 544, 752, 998
HpaII	CCGG	3 cut(s)	121, 144, 384
HphI	GGTGA	4 cut(s)	152, 418, 488, 736
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	4 cut(s)	75, 519, 555, 952
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4V	TGCA	8 cut(s)	23, 289, 295, 336, 623, 652, 709, 930
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
HpyF3I	CTNAG	2 cut(s)	80, 516
Hsp92II	CATG	3 cut(s)	439, 878, 923
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	109, 493, 947
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	360, 788
LweI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	5 cut(s)	41, 149, 158, 980, 989
MalI	GATC	3 cut(s)	111, 495, 949
MbiI	CCGCTC	1 cut(s)	729
MboI	GATC	3 cut(s)	109, 493, 947
MboII	GAAGA	4 cut(s)	275, 542, 935, 965
MflI	RGATCY	1 cut(s)	947
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	8 cut(s)	69, 342, 421, 549, 577, 798, 850, 906
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	116, 227, 364, 742, 766, 909
Mox20I	TGGCCA	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	4 cut(s)	204, 576, 714, 840
MslI	CAYNNNNRTG	1 cut(s)	879
Msp20I	TGGCCA	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	121, 144, 384
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	2 cut(s)	703, 932
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
NciI	CCSGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	3 cut(s)	109, 493, 947
NlaIII	CATG	3 cut(s)	439, 878, 923
NmuCI	GTSAC	1 cut(s)	158
NruI	TCGCGA	1 cut(s)	29
NspI	RCATGY	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 661
PctI	GAATGC	2 cut(s)	703, 932
PfeI	GAWTC	4 cut(s)	13, 165, 752, 998
PkrI	GCNGC	2 cut(s)	350, 778
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	123
PstI	CTGCAG	2 cut(s)	297, 711
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	947
PvuI	CGATCG	1 cut(s)	112
RruI	TCGCGA	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	879
SaqAI	TTAA	4 cut(s)	204, 576, 714, 840
SatI	GCNGC	2 cut(s)	349, 777
Sau3AI	GATC	3 cut(s)	109, 493, 947
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
SfcI	CTRYAG	3 cut(s)	293, 480, 707
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	8 cut(s)	69, 342, 421, 549, 577, 798, 850, 906
SsiI	CCGC	2 cut(s)	539, 729
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	816
TaqI	TCGA	5 cut(s)	96, 108, 168, 465, 899
TasI	AATT	8 cut(s)	69, 342, 421, 549, 577, 798, 850, 906
TfiI	GAWTC	4 cut(s)	13, 165, 752, 998
Tru1I	TTAA	4 cut(s)	204, 576, 714, 840
Tru9I	TTAA	4 cut(s)	204, 576, 714, 840
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	348, 776
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	543, 809, 936, 1000
TspGWI	ACGGA	2 cut(s)	146, 275
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	4 cut(s)	69, 421, 549, 798
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.