Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

26206852 .. 26209519

Gene Structure 2668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTATATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCAAGCAAAAGTTTCAGTAAATTTCACTGATGGCCTGTTTTTGGAATGGTTCTGTCTTGTTGTCAATGATGGGTGTCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAAAACGGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCTAATAACTTATGTATCAAACTATGCCGTATTAAACCTGCATATGACTTATCAAATAATGGCAAGATGCAAAAATTTGGACGTTGGGCTCTGAAAATGTATAACAAGGAAAAGAATGCTAAACTGCAGTTTAAGAGAGTGGTGAACGGAAGCAAGCTGCAGTGGGAGGATTTTTTTTATCTAACGTTGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAAATGAGAAGAGGATTAAGCATCCCTTTAAGCATCCCAATTCCAAGCTCATTTTGTTTGGCCATGTTGATGATAATGGGAGATTGTTGATCCTAATGGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGAATCTGAAGATATTATTACTGCACACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGTTTTCATTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

253

Amino Acids

29.37

Weight (kDa)

8.62

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	343
AclI	AACGTT	1 cut(s)	482
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	4 cut(s)	136, 264, 371, 513
AcuI	CTGAAG	1 cut(s)	699
AfiI	CCNNNNNNNGG	2 cut(s)	157, 721
AluBI	AGCT	2 cut(s)	454, 586
AluI	AGCT	2 cut(s)	454, 586
Alw21I	GWGCWC	1 cut(s)	53
Alw44I	GTGCAC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	622
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	148, 598
ApaLI	GTGCAC	1 cut(s)	49
ApeKI	GCWGC	3 cut(s)	63, 454, 491
ApoI	RAATTY	4 cut(s)	136, 264, 371, 513
AsuHPI	GGTGA	2 cut(s)	203, 451
BaeGI	GKGCMC	1 cut(s)	53
BaeI	ACNNNNGTAYC	2 cut(s)	295, 328
BalI	TGGCCA	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	75, 441, 503
BccI	CCATC	2 cut(s)	140, 179
BceAI	ACGGC	2 cut(s)	309, 699
BclI	TGATCA	1 cut(s)	208
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	4 cut(s)	8, 195, 422, 455
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	64, 455, 492
BlsI	GCNGC	3 cut(s)	65, 456, 493
BmsI	GCATC	6 cut(s)	49, 85, 354, 487, 568, 580
BpiI	GAAGAC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 721
Bse118I	RCCGGY	1 cut(s)	98
BseGI	GGATG	2 cut(s)	559, 571
BseLI	CCNNNNNNNGG	2 cut(s)	157, 721
BseMII	CTCAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	75, 441, 503
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	150, 600
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	157, 721
BsmFI	GGGAC	1 cut(s)	300
BsmI	GAATGC	2 cut(s)	418, 659
BsnI	GGCC	2 cut(s)	150, 600
Bsp1286I	GDGCHC	2 cut(s)	53, 388
Bsp143I	GATC	2 cut(s)	208, 627
BspANI	GGCC	2 cut(s)	150, 600
BspCNI	CTCAG	1 cut(s)	244
BspMAI	CTGCAG	3 cut(s)	12, 426, 459
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	2 cut(s)	208, 627
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	542
BstAPI	GCANNNNNTGC	2 cut(s)	95, 497
BstC8I	GCNNGC	1 cut(s)	452
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	559, 571
BstKTI	GATC	2 cut(s)	211, 630
BstMBI	GATC	2 cut(s)	208, 627
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 104, 497
BstSFI	CTRYAG	4 cut(s)	8, 195, 422, 455
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	75, 441, 503
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	150, 600
BtsCI	GGATG	2 cut(s)	559, 571
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	141, 464
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	452
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr10I	RCCGGY	1 cut(s)	98
CviAII	CATG	2 cut(s)	602, 647
CviJI	RGCY	6 cut(s)	66, 150, 386, 454, 586, 600
CviKI_1	RGCY	6 cut(s)	66, 150, 386, 454, 586, 600
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	210, 629
DpnII	GATC	2 cut(s)	208, 627
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	2 cut(s)	605, 650
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	601, 646
FauNDI	CATATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	64, 455, 492
FokI	GGATG	2 cut(s)	546, 558
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	3 cut(s)	64, 455, 492
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	3 cut(s)	64, 455, 492
HaeIII	GGCC	2 cut(s)	150, 600
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	605, 650
HinfI	GANTC	3 cut(s)	259, 674, 725
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	203, 451
Hpy166II	GTNNAC	2 cut(s)	51, 442
Hpy188I	TCNGA	4 cut(s)	234, 270, 390, 679
Hpy8I	GTNNAC	2 cut(s)	51, 442
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	2 cut(s)	379, 482
HpyCH4V	TGCA	9 cut(s)	4, 10, 51, 338, 367, 424, 457, 657, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 104, 497
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	379, 482
Hsp92II	CATG	2 cut(s)	605, 650
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	208, 627
LpnPI	CCDG	7 cut(s)	39, 112, 164, 269, 348, 486, 713
Lsp1109I	GCAGC	3 cut(s)	75, 441, 503
LweI	GCATC	6 cut(s)	49, 85, 354, 487, 568, 580
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	379, 482
MaeIII	GTNAC	2 cut(s)	707, 716
MalI	GATC	2 cut(s)	210, 629
MboI	GATC	2 cut(s)	208, 627
MboII	GAAGA	4 cut(s)	257, 559, 662, 692
MhlI	GDGCHC	2 cut(s)	53, 388
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	7 cut(s)	57, 136, 264, 292, 371, 513, 577
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	5 cut(s)	79, 457, 481, 543, 636
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	5 cut(s)	291, 330, 429, 555, 567
MslI	CAYNNNNRTG	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	600
MspI	CCGG	1 cut(s)	99
Mva1269I	GAATGC	2 cut(s)	418, 659
MwoI	GCNNNNNNNGC	3 cut(s)	95, 104, 497
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	2 cut(s)	208, 627
NlaIII	CATG	2 cut(s)	605, 650
PctI	GAATGC	2 cut(s)	418, 659
PfeI	GAWTC	2 cut(s)	674, 725
PkrI	GCNGC	3 cut(s)	65, 456, 493
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp1406I	AACGTT	1 cut(s)	482
PstI	CTGCAG	3 cut(s)	12, 426, 459
PstNI	CAGNNNCTG	1 cut(s)	500
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	5 cut(s)	291, 330, 429, 555, 567
SatI	GCNGC	3 cut(s)	64, 455, 492
Sau3AI	GATC	2 cut(s)	208, 627
SchI	GAGTC	1 cut(s)	268
SduI	GDGCHC	2 cut(s)	53, 388
SetI	ASST	8 cut(s)	216, 337, 382, 456, 485, 588, 709, 749
SfaNI	GCATC	6 cut(s)	49, 85, 354, 487, 568, 580
SfcI	CTRYAG	4 cut(s)	8, 195, 422, 455
SmiMI	CAYNNNNRTG	1 cut(s)	606
Sse9I	AATT	7 cut(s)	57, 136, 264, 292, 371, 513, 577
SspMI	CTAG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	2 cut(s)	382, 485
TasI	AATT	7 cut(s)	57, 136, 264, 292, 371, 513, 577
TfiI	GAWTC	2 cut(s)	674, 725
Tru1I	TTAA	5 cut(s)	291, 330, 429, 555, 567
Tru9I	TTAA	5 cut(s)	291, 330, 429, 555, 567
TscAI	CASTG	2 cut(s)	148, 464
TseI	GCWGC	3 cut(s)	63, 454, 491
TspDTI	ATGAA	4 cut(s)	258, 524, 663, 727
TspGWI	ACGGA	2 cut(s)	269, 459
TspRI	CASTG	2 cut(s)	148, 464
VneI	GTGCAC	1 cut(s)	49
XapI	RAATTY	4 cut(s)	136, 264, 371, 513
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.