Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

81625608 .. 81627051

Gene Structure 1444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGATTCGTTCTGCACTCGCAAAGATGGCGACTAACTCTGTTCACAACAACAGAAGTGGAATTCTGACGCTTAGGGCTTTTGCGACCTCTGCCATCGACAAAAAACCCAGACCCCAAAACGACCCGGTGTTTAATTATTATATGGATTTAGGAGGATTAGAGCCAGCTGCCCGTTTCGCCATGGAAGAGTTCAACAAGCGAAAGAATGCGCAACTGCGGTTTGTGAGAGTTGTGAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTATATGTTATAACATTGGAGGCAGTTGATGACGGTGTGGCTAAACTTTACCAAGCAAAAGTTTCCGTAAATTTCACTGACGGCATGTTTTTTGGAATGGTTCTGTCTTGTCAAAACTTCTTTGCTCAGAAGGACCATGAAGACAATGCGGAGAATCAAATGCAAATGTGTAAAAAAAAAAGGGACTTCATTGTTCTAATAACTCATGTATCAAACTATGTCCTATCGAACCTGCATGACTATTCAAATAATGGCAAGATGCAAAGATTTGGACATTGGGCCGTGGAAATGTTCGACAAGGAAAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

196

Amino Acids

22.28

Weight (kDa)

9.36

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	58 - 114	3.3e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
Acc16I	TGCGCA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	516
AciI	CCGC	2 cut(s)	220, 425
AcsI	RAATTY	2 cut(s)	63, 346
AgsI	TTSAA	2 cut(s)	196, 522
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	263
Alw44I	GTGCAC	1 cut(s)	259
AoxI	GGCC	1 cut(s)	555
ApaLI	GTGCAC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	170, 273
ApoI	RAATTY	2 cut(s)	63, 346
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	409, 555
AsuC2I	CCSGG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	157, 285
BccI	CCATC	2 cut(s)	22, 104
BceAI	ACGGC	2 cut(s)	373, 542
BcnI	CCSGG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	2 cut(s)	171, 274
BlsI	GCNGC	2 cut(s)	172, 275
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	409, 555
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	259, 525
BpiI	GAAGAC	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	183, 558
BseDI	CCNNGG	2 cut(s)	183, 558
BseMII	CTCAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	157, 285
BshFI	GGCC	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	2 cut(s)	220, 425
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	1 cut(s)	415
BspMI	ACCTGC	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	183, 558
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	74, 402
BstDSI	CCRYGG	2 cut(s)	183, 558
BstHHI	GCGC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 92, 179
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	157, 285
BstV2I	GAAGAC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	557
BtgI	CCRYGG	2 cut(s)	183, 558
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	409, 555
CseI	GACGC	1 cut(s)	79
CspCI	CAANNNNNGTGG	2 cut(s)	40, 75
CviAII	CATG	5 cut(s)	184, 361, 413, 482, 512
CviJI	RGCY	6 cut(s)	80, 166, 170, 276, 317, 557
CviKI_1	RGCY	6 cut(s)	80, 166, 170, 276, 317, 557
DdeI	CTNAG	2 cut(s)	74, 402
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	5 cut(s)	187, 364, 416, 485, 515
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	5 cut(s)	183, 360, 412, 481, 511
Fnu4HI	GCNGC	2 cut(s)	171, 274
Fsp4HI	GCNGC	2 cut(s)	171, 274
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	2 cut(s)	171, 274
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	5 cut(s)	187, 364, 416, 485, 515
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	2 cut(s)	7, 430
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	46, 261
Hpy188I	TCNGA	2 cut(s)	69, 405
Hpy8I	GTNNAC	2 cut(s)	46, 261
HpyAV	CCTTC	2 cut(s)	232, 400
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	5 cut(s)	17, 261, 439, 511, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 92, 179
HpyF3I	CTNAG	2 cut(s)	74, 402
Hsp92II	CATG	5 cut(s)	187, 364, 416, 485, 515
HspAI	GCGC	1 cut(s)	212
LpnPI	CCDG	5 cut(s)	124, 141, 180, 249, 521
Lsp1109I	GCAGC	2 cut(s)	157, 285
LweI	GCATC	2 cut(s)	259, 525
MboII	GAAGA	2 cut(s)	200, 428
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	4 cut(s)	63, 136, 267, 346
MnlI	CCTC	3 cut(s)	100, 149, 289
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	29, 92, 179
NciI	CCSGG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	183
NlaIII	CATG	5 cut(s)	187, 364, 416, 485, 515
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	1 cut(s)	364
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	7, 430
PkrI	GCNGC	2 cut(s)	172, 275
PsiI	TTATAA	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	409, 555
PvuII	CAGCTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	171, 274
Sau96I	GGNCC	2 cut(s)	409, 555
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	4 cut(s)	92, 172, 510, 585
SfaNI	GCATC	2 cut(s)	259, 525
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	4 cut(s)	63, 136, 267, 346
SsiI	CCGC	2 cut(s)	220, 425
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	99, 503, 570
TasI	AATT	4 cut(s)	63, 136, 267, 346
TfiI	GAWTC	2 cut(s)	7, 430
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	2 cut(s)	170, 273
TspDTI	ATGAA	2 cut(s)	429, 454
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	2 cut(s)	63, 346
XceI	RCATGY	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.