Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

21715844 .. 21717838

Gene Structure 1995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTATGGCGATTCGTTCTGCACTCGCAAAGCTGGCGAGTAACTCTATTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCCATCGACAAAAATCTCAATCGCCAAAGCCGGGCCGTTTCGGGGTTTCCTGCTGGTCATTACTTCCGTCACCGATTCGATTATGGAAGCTATAAAAGCAAAAAAAAGGAGCTCAAGGTATTTGATTATTATATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCATGGAAGAGTTCAACAAGCGAAGGAAAATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTATATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCAAGCAAAAGTTTCAGTAAATTTCACTGATGGCCTGTTTTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGTCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAAAGCGGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCTAATAACTTATGTATCAAACTATGCCGTATTAAACCTGCATATGACTTATCAAATAATGGCAAGATGCAAAAATTTGGACGTTGGGCTCTGAAAATGTATAACAAGGAAAAGAATGCTAAACTGCAGTTTAAGAGAGTGGTGAACGGAAGCAAGCTGCAGTGGGAGGATTTTTTTTATCTAATGTTGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGATGAGAAGAGGATTAAGCATCCCTTTAAGCATCCCAATTCCAAGCTCATTTTGTTTGGCCATGTTGATGATAATGGGAGATTGTTGATCCTAATGGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGAATCTGAAGATATTATTACTGCACACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGTTTTCATTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

348

Amino Acids

40.37

Weight (kDa)

9.29

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	83 - 139	4.9e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	1 cut(s)	907
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	5 cut(s)	69, 421, 549, 656, 798
AcuI	CTGAAG	1 cut(s)	984
AfiI	CCNNNNNNNGG	4 cut(s)	121, 132, 442, 1006
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	5 cut(s)	34, 180, 202, 739, 871
AluI	AGCT	5 cut(s)	34, 180, 202, 739, 871
Alw21I	GWGCWC	2 cut(s)	204, 338
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	907
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	3 cut(s)	123, 433, 883
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	3 cut(s)	348, 739, 776
ApoI	RAATTY	5 cut(s)	69, 421, 549, 656, 798
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	152, 488, 736
BaeGI	GKGCMC	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	580, 613
BalI	TGGCCA	1 cut(s)	885
BanII	GRGCYC	2 cut(s)	204, 673
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	204, 338
BbvI	GCAGC	3 cut(s)	360, 726, 788
BccI	CCATC	3 cut(s)	101, 425, 464
BceAI	ACGGC	3 cut(s)	110, 594, 984
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	4 cut(s)	293, 480, 707, 740
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	3 cut(s)	349, 740, 777
BlsI	GCNGC	3 cut(s)	350, 741, 778
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	7 cut(s)	66, 334, 370, 639, 772, 853, 865
BpiI	GAAGAC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 132, 442, 1006
Bse118I	RCCGGY	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	844, 856
BseLI	CCNNNNNNNGG	4 cut(s)	121, 132, 442, 1006
BseMII	CTCAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	3 cut(s)	360, 726, 788
BsgI	GTGCAG	2 cut(s)	6, 963
BshFI	GGCC	3 cut(s)	125, 435, 885
BsiHKAI	GWGCWC	2 cut(s)	204, 338
BsiSI	CCGG	2 cut(s)	121, 384
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	4 cut(s)	121, 132, 442, 1006
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	2 cut(s)	703, 944
BsnI	GGCC	3 cut(s)	125, 435, 885
Bsp1286I	GDGCHC	3 cut(s)	204, 338, 673
Bsp143I	GATC	2 cut(s)	493, 912
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	539
BspANI	GGCC	3 cut(s)	125, 435, 885
BspCNI	CTCAG	1 cut(s)	529
BspMAI	CTGCAG	3 cut(s)	297, 711, 744
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	907
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	493, 912
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	2 cut(s)	258, 827
BstAPI	GCANNNNNTGC	2 cut(s)	380, 782
BstC8I	GCNNGC	3 cut(s)	36, 246, 737
BstDEI	CTNAG	2 cut(s)	80, 516
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	844, 856
BstKTI	GATC	2 cut(s)	496, 915
BstMBI	GATC	2 cut(s)	493, 912
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	4 cut(s)	293, 480, 707, 740
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	360, 726, 788
BstV2I	GAAGAC	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	125, 435, 885
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	844, 856
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	2 cut(s)	426, 749
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	36, 246, 737
CaiI	CAGNNNCTG	1 cut(s)	785
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	3 cut(s)	259, 887, 932
DdeI	CTNAG	2 cut(s)	80, 516
DpnI	GATC	2 cut(s)	495, 914
DpnII	GATC	2 cut(s)	493, 912
EaeI	YGGCCR	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	258, 827
EarI	CTCTTC	2 cut(s)	258, 827
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	2 cut(s)	204, 673
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	984
EcoICRI	GAGCTC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	2 cut(s)	204, 673
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	262, 890, 935
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	3 cut(s)	258, 886, 931
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	349, 740, 777
FokI	GGATG	2 cut(s)	831, 843
FriOI	GRGCYC	2 cut(s)	204, 673
Fsp4HI	GCNGC	3 cut(s)	349, 740, 777
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	3 cut(s)	349, 740, 777
HaeIII	GGCC	3 cut(s)	125, 435, 885
HapII	CCGG	2 cut(s)	121, 384
Hin1II	CATG	3 cut(s)	262, 890, 935
HinfI	GANTC	5 cut(s)	13, 165, 544, 959, 1010
HpaII	CCGG	2 cut(s)	121, 384
HphI	GGTGA	3 cut(s)	152, 488, 736
Hpy166II	GTNNAC	2 cut(s)	336, 727
Hpy188I	TCNGA	5 cut(s)	75, 519, 555, 675, 964
Hpy8I	GTNNAC	2 cut(s)	336, 727
HpyAV	CCTTC	2 cut(s)	273, 514
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4IV	ACGT	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
HpyF3I	CTNAG	2 cut(s)	80, 516
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	3 cut(s)	262, 890, 935
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	493, 912
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	360, 726, 788
LweI	GCATC	7 cut(s)	66, 334, 370, 639, 772, 853, 865
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	4 cut(s)	41, 158, 992, 1001
MalI	GATC	2 cut(s)	495, 914
MboI	GATC	2 cut(s)	493, 912
MboII	GAAGA	5 cut(s)	275, 542, 844, 947, 977
MhlI	GDGCHC	3 cut(s)	204, 338, 673
MlsI	TGGCCA	1 cut(s)	885
MluCI	AATT	8 cut(s)	69, 342, 421, 549, 577, 656, 798, 862
MluNI	TGGCCA	1 cut(s)	885
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	6 cut(s)	227, 364, 742, 766, 828, 921
Mox20I	TGGCCA	1 cut(s)	885
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	5 cut(s)	576, 615, 714, 840, 852
MslI	CAYNNNNRTG	1 cut(s)	891
Msp20I	TGGCCA	1 cut(s)	885
MspI	CCGG	2 cut(s)	121, 384
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	2 cut(s)	703, 944
MwoI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	2 cut(s)	493, 912
NlaIII	CATG	3 cut(s)	262, 890, 935
NmuCI	GTSAC	1 cut(s)	158
PctI	GAATGC	2 cut(s)	703, 944
PfeI	GAWTC	4 cut(s)	13, 165, 959, 1010
PkrI	GCNGC	3 cut(s)	350, 741, 778
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	123
PstI	CTGCAG	3 cut(s)	297, 711, 744
PstNI	CAGNNNCTG	1 cut(s)	785
RseI	CAYNNNNRTG	1 cut(s)	891
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	5 cut(s)	576, 615, 714, 840, 852
SatI	GCNGC	3 cut(s)	349, 740, 777
Sau3AI	GATC	2 cut(s)	493, 912
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	3 cut(s)	204, 338, 673
SfaNI	GCATC	7 cut(s)	66, 334, 370, 639, 772, 853, 865
SfcI	CTRYAG	4 cut(s)	293, 480, 707, 740
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	8 cut(s)	69, 342, 421, 549, 577, 656, 798, 862
SsiI	CCGC	1 cut(s)	539
SspMI	CTAG	1 cut(s)	500
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	816
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	3 cut(s)	96, 168, 465
TasI	AATT	8 cut(s)	69, 342, 421, 549, 577, 656, 798, 862
TfiI	GAWTC	4 cut(s)	13, 165, 959, 1010
Tru1I	TTAA	5 cut(s)	576, 615, 714, 840, 852
Tru9I	TTAA	5 cut(s)	576, 615, 714, 840, 852
TscAI	CASTG	2 cut(s)	433, 749
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	348, 739, 776
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	543, 809, 948, 1012
TspGWI	ACGGA	2 cut(s)	146, 744
TspRI	CASTG	2 cut(s)	433, 749
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	5 cut(s)	69, 421, 549, 656, 798
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.