Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

21345174 .. 21345804

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012687

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAAGGGGATGACCTAGAACTAGCAAAATCAGTCTCATCCGACCTACTTCCCAATGATGAGGCAACAGTAATGATTGAGTTGGTGGTAGCATCAAGCATCCCTCCTCCGGCAGCGGTTGTGGTGGCAGTGGTGATCATGGAGGCTATGGACGCCGCCAAGAAGAATACGAAGAACAAAAAAGCCGCCAGCACCATATTCTCTCGAATCTCTGATCTTTCTCCTTCGATTCCGTCCCCATTAACTTCAATTCGGACCGAGACCGTGATAAGGACTGAGACTAGGACCGATACTCCCAAAGCGATTGAGATTGAGATTGAGACCGAGACAGAGACGATGCGCATGAATATGAGTGGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.93

Weight (kDa)

4.66

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	341
AciI	CCGC	3 cut(s)	116, 156, 186
AcoI	YGGCCR	1 cut(s)	355
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	109, 270
AgsI	TTSAA	1 cut(s)	249
Alw26I	GTCTC	6 cut(s)	40, 254, 272, 314, 320, 326
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	255, 285
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	255, 285
BalI	TGGCCA	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	125
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	6 cut(s)	40, 254, 272, 314, 320, 326
BfaI	CTAG	3 cut(s)	17, 23, 282
BisI	GCNGC	3 cut(s)	114, 156, 186
BlsI	GCNGC	3 cut(s)	115, 157, 187
Bme18I	GGWCC	2 cut(s)	255, 285
BmgT120I	GGNCC	2 cut(s)	255, 285
BmsI	GCATC	3 cut(s)	101, 108, 327
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	254, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 270
BseGI	GGATG	3 cut(s)	16, 38, 99
BseLI	CCNNNNNNNGG	2 cut(s)	109, 270
BseMII	CTCAG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	109, 270
BsmAI	GTCTC	6 cut(s)	40, 254, 272, 314, 320, 326
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	2 cut(s)	254, 314
Bsp143I	GATC	2 cut(s)	135, 214
BspACI	CCGC	3 cut(s)	116, 156, 186
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	268
BspTNI	GGTCTC	2 cut(s)	254, 314
BssMI	GATC	2 cut(s)	135, 214
BssNI	GRCGYC	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	70, 265
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	16, 38, 99
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	2 cut(s)	138, 217
BstMAI	GTCTC	6 cut(s)	40, 254, 272, 314, 320, 326
BstMBI	GATC	2 cut(s)	135, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	16, 38, 99
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	255, 285
CpoI	CGGWCCG	1 cut(s)	255
CseI	GACGC	1 cut(s)	161
CspI	CGGWCCG	1 cut(s)	255
CviAII	CATG	2 cut(s)	139, 343
CviJI	RGCY	3 cut(s)	146, 185, 357
CviKI_1	RGCY	3 cut(s)	146, 185, 357
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	137, 216
DpnII	GATC	2 cut(s)	135, 214
EaeI	YGGCCR	1 cut(s)	355
Eco31I	GGTCTC	2 cut(s)	254, 314
Eco47I	GGWCC	2 cut(s)	255, 285
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	2 cut(s)	142, 346
FaiI	YATR	5 cut(s)	140, 149, 197, 344, 350
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	138, 342
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	114, 156, 186
FokI	GGATG	3 cut(s)	23, 25, 86
Fsp4HI	GCNGC	3 cut(s)	114, 156, 186
FspAI	RTGCGCAY	1 cut(s)	341
FspBI	CTAG	3 cut(s)	17, 23, 282
FspI	TGCGCA	1 cut(s)	341
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	3 cut(s)	114, 156, 186
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	142, 346
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	207, 229
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	43, 214, 255
Hpy188III	TCNNGA	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	70, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	142, 346
HspAI	GCGC	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	135, 214
LpnPI	CCDG	2 cut(s)	123, 202
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	3 cut(s)	101, 108, 327
MaeI	CTAG	3 cut(s)	17, 23, 282
MalI	GATC	2 cut(s)	137, 216
MboI	GATC	2 cut(s)	135, 214
MboII	GAAGA	2 cut(s)	175, 184
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	4 cut(s)	55, 114, 117, 136
Mox20I	TGGCCA	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	2 cut(s)	242, 361
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	2 cut(s)	135, 214
NlaIII	CATG	2 cut(s)	142, 346
NsbI	TGCGCA	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	207, 229
PkrI	GCNGC	3 cut(s)	115, 157, 187
PspPI	GGNCC	2 cut(s)	255, 285
RseI	CAYNNNNRTG	1 cut(s)	347
Rsr2I	CGGWCCG	1 cut(s)	255
RsrII	CGGWCCG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	242, 361
SatI	GCNGC	3 cut(s)	114, 156, 186
Sau3AI	GATC	2 cut(s)	135, 214
Sau96I	GGNCC	2 cut(s)	255, 285
SetI	ASST	2 cut(s)	18, 48
SfaNI	GCATC	3 cut(s)	101, 108, 327
SinI	GGWCC	2 cut(s)	255, 285
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	116, 156, 186
SspMI	CTAG	3 cut(s)	17, 23, 282
TaaI	ACNGT	2 cut(s)	70, 265
TaqI	TCGA	2 cut(s)	205, 227
TaqII	GACCGA	3 cut(s)	272, 302, 338
TasI	AATT	1 cut(s)	249
TauI	GCSGC	2 cut(s)	158, 188
TfiI	GAWTC	2 cut(s)	207, 229
Tru1I	TTAA	2 cut(s)	242, 361
Tru9I	TTAA	2 cut(s)	242, 361
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	255, 285
XspI	CTAG	3 cut(s)	17, 23, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.