Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

81521661 .. 81522424

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG528000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCGACTAACTCTATTCACAACAACTTTTTTGCGACCTCTGCCATCGACAAAAAACCCAAACCCCAAAACGACTCCGTTTCGGGGTTTCCCGCTGGTCATTACTTCCGCCACCGATTCGATTATTCAAGCCATAAAACCAAAAAAAAACAAGAGCCTAAGGTGTTTGATTATTATATGGATTTAGGAGGATTAGAGCCAGCTGCCCGTTTCTCCATCGAAGAGTTCAACAAGCGAAAGAATGCGCAACTGCGGTTTGTGAGAGTTGTGAAGTCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTATATGTTATAACATTGGAGGCAGTTGATGCCGGTGTGGCTAAACTTTACCAAGCAAAAGTTTCGGTAAATTTCACTGACGGCATGTTTTTTGGAATGGTTCTGTCTTGTCGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

142

Amino Acids

16.2

Weight (kDa)

9.79

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	69 - 125	4.3e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
Acc16I	TGCGCA	1 cut(s)	246
AciI	CCGC	3 cut(s)	93, 109, 253
AcsI	RAATTY	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	129, 229
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	296
Alw44I	GTGCAC	1 cut(s)	292
ApaLI	GTGCAC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	203, 306
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	247
AxyI	CCTNAGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	190, 318
BccI	CCATC	2 cut(s)	53, 224
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	2 cut(s)	204, 307
BlsI	GCNGC	2 cut(s)	205, 308
BmsI	GCATC	2 cut(s)	292, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	190, 318
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	296
BspACI	CCGC	3 cut(s)	93, 109, 253
BsrFI	RCCGGY	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 338, 347
BstNSI	RCATGY	1 cut(s)	397
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	190, 318
Bsu36I	CCTNAGG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	341
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	6 cut(s)	132, 157, 199, 203, 309, 350
CviKI_1	RGCY	6 cut(s)	132, 157, 199, 203, 309, 350
DdeI	CTNAG	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	397
FaiI	YATR	8 cut(s)	135, 177, 179, 279, 313, 315, 320, 395
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	204, 307
Fsp4HI	GCNGC	2 cut(s)	204, 307
FspI	TGCGCA	1 cut(s)	246
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	204, 307
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	74, 117
HpaII	CCGG	1 cut(s)	342
Hpy166II	GTNNAC	1 cut(s)	294
Hpy8I	GTNNAC	1 cut(s)	294
Hpy99I	CGWCG	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 338, 347
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	245
LpnPI	CCDG	4 cut(s)	81, 213, 282, 355
Lsp1109I	GCAGC	2 cut(s)	190, 318
LweI	GCATC	2 cut(s)	292, 328
MaeIII	GTNAC	1 cut(s)	273
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	300, 379
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	3 cut(s)	49, 182, 322
MspA1I	CMGCKG	2 cut(s)	95, 203
MspI	CCGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	41, 338, 347
NlaIII	CATG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	273
NsbI	TGCGCA	1 cut(s)	246
NspI	RCATGY	1 cut(s)	397
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	205, 308
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PsiI	TTATAA	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	203
SatI	GCNGC	2 cut(s)	204, 307
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	3 cut(s)	41, 165, 205
SfaNI	GCATC	2 cut(s)	292, 328
Sse9I	AATT	2 cut(s)	300, 379
SsiI	CCGC	3 cut(s)	93, 109, 253
TaqI	TCGA	4 cut(s)	48, 120, 219, 424
TasI	AATT	2 cut(s)	300, 379
TfiI	GAWTC	1 cut(s)	117
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	2 cut(s)	203, 306
Tsp45I	GTSAC	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	391
VneI	GTGCAC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.