Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

57179323 .. 57181376

Gene Structure 2054 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG418400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTATGGCGATTCGTTCTGCACTCGCAAAGCTGGCGAGTAACTCTATTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCTATCGACAAAAGCCTCGATCGCCAAAGCCGGGCCGTTTCGGGGTTTCCTGCCGGTCGTTACTTCCGTCACCGATTCGATTATGGAAGCTATAAAAGCAAAAAAAAGGAGCTTAAGGTATTTGATTATTATATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCACGGAAGAGTTCAACAAGCGAAAGAAAATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTCTGCACAGGAATTAGCAGCCTTTATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCAAGCAAAAGTTTCAGTAAATTTCACTGATGGCATGTTTTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGCCCAATAGCACTATTTGATCACCTAGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAAAGCAGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCTAATAAATTATGTATCAAACTATGTCGTATTGAACCTGCATATGACTTATCAAATAATGGCAAGATGCAAAGATTTGGACGTTGGGCCGTGAAAATGTACAACAAGGAAAAGAATGCTAAACTGCAGTTTAAGAGAGTGGTGAACGGAAGCAAGCTGCAGTGGGAGGATTTTGTTTATCTAACAATGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGATGACGAGAAGATTAAGCATCCCAATTCCAAGCTCATTCTGTTTGGCCATGTTGATTATAATGGGGGATTGTCGATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGAATCTGAAGATATTATTACAGCATACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGTTTTCCTTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

344

Amino Acids

39.68

Weight (kDa)

9.06

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	83 - 139	8e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	885
Acc36I	ACCTGC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	4 cut(s)	69, 421, 549, 798
AcuI	CTGAAG	1 cut(s)	972
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	271, 617
AluBI	AGCT	5 cut(s)	34, 180, 202, 739, 859
AluI	AGCT	5 cut(s)	34, 180, 202, 739, 859
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	3 cut(s)	123, 669, 871
ApeKI	GCWGC	3 cut(s)	348, 739, 776
ApoI	RAATTY	4 cut(s)	69, 421, 549, 798
AspS9I	GGNCC	2 cut(s)	123, 669
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	152, 488, 736
BaeGI	GKGCMC	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	360, 726, 788
BccI	CCATC	2 cut(s)	425, 464
BceAI	ACGGC	3 cut(s)	110, 656, 972
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	3 cut(s)	293, 707, 740
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	3 cut(s)	349, 740, 777
BlsI	GCNGC	3 cut(s)	350, 741, 778
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	123, 669
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
BpiI	GAAGAC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 132, 994
Bse118I	RCCGGY	2 cut(s)	143, 383
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	844
BseLI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BseMII	CTCAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	360, 726, 788
BsgI	GTGCAG	2 cut(s)	6, 319
Bsh1285I	CGRYCG	2 cut(s)	112, 148
BshFI	GGCC	3 cut(s)	125, 671, 873
BshNI	GGYRCC	1 cut(s)	474
BsiEI	CGRYCG	2 cut(s)	112, 148
BsiSI	CCGG	3 cut(s)	121, 144, 384
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	2 cut(s)	703, 932
BsnI	GGCC	3 cut(s)	125, 671, 873
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	2 cut(s)	109, 493
BspANI	GGCC	3 cut(s)	125, 671, 873
BspCNI	CTCAG	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	3 cut(s)	297, 711, 744
BspMI	ACCTGC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	143, 383
BsrGI	TGTACA	1 cut(s)	681
BssAI	RCCGGY	2 cut(s)	143, 383
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	109, 493
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	380, 782
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	3 cut(s)	36, 246, 737
BstDEI	CTNAG	2 cut(s)	80, 516
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	844
BstKTI	GATC	2 cut(s)	112, 496
BstMBI	GATC	2 cut(s)	109, 493
BstMCI	CGRYCG	2 cut(s)	112, 148
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 111, 186, 254, 380, 389, 782
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	3 cut(s)	293, 707, 740
BstSLI	GKGCMC	1 cut(s)	479
BstV1I	GCAGC	3 cut(s)	360, 726, 788
BstV2I	GAAGAC	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	125, 671, 873
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	844
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	2 cut(s)	426, 749
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	36, 246, 737
CaiI	CAGNNNCTG	1 cut(s)	785
Cfr10I	RCCGGY	2 cut(s)	143, 383
Cfr13I	GGNCC	2 cut(s)	123, 669
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	3 cut(s)	436, 875, 920
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	2 cut(s)	80, 516
DpnI	GATC	2 cut(s)	111, 495
DpnII	GATC	2 cut(s)	109, 493
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	69
FaeI	CATG	3 cut(s)	439, 878, 923
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	3 cut(s)	435, 874, 919
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	349, 740, 777
FokI	GGATG	1 cut(s)	831
Fsp4HI	GCNGC	3 cut(s)	349, 740, 777
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	3 cut(s)	349, 740, 777
HaeIII	GGCC	3 cut(s)	125, 671, 873
HapII	CCGG	3 cut(s)	121, 144, 384
Hin1II	CATG	3 cut(s)	439, 878, 923
HinfI	GANTC	5 cut(s)	13, 165, 544, 947, 998
HpaII	CCGG	3 cut(s)	121, 144, 384
HphI	GGTGA	3 cut(s)	152, 488, 736
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	4 cut(s)	75, 519, 555, 952
Hpy8I	GTNNAC	1 cut(s)	727
HpyAV	CCTTC	2 cut(s)	514, 1022
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	9 cut(s)	23, 289, 295, 336, 623, 652, 709, 742, 930
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 111, 186, 254, 380, 389, 782
HpyF3I	CTNAG	2 cut(s)	80, 516
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	3 cut(s)	439, 878, 923
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	109, 493
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	360, 726, 788
LweI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	5 cut(s)	41, 149, 158, 980, 989
MalI	GATC	2 cut(s)	111, 495
MboI	GATC	2 cut(s)	109, 493
MboII	GAAGA	5 cut(s)	275, 542, 847, 935, 965
MhlI	GDGCHC	1 cut(s)	479
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	9 cut(s)	69, 342, 421, 549, 577, 590, 798, 850, 906
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	116, 227, 364, 742, 766, 909
Mox20I	TGGCCA	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	4 cut(s)	204, 576, 714, 840
Msp20I	TGGCCA	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	121, 144, 384
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	2 cut(s)	703, 932
MwoI	GCNNNNNNNGC	7 cut(s)	35, 111, 186, 254, 380, 389, 782
NciI	CCSGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	2 cut(s)	109, 493
NlaIII	CATG	3 cut(s)	439, 878, 923
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	2 cut(s)	703, 932
PfeI	GAWTC	4 cut(s)	13, 165, 947, 998
PkrI	GCNGC	3 cut(s)	350, 741, 778
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	885
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	2 cut(s)	123, 669
PstI	CTGCAG	3 cut(s)	297, 711, 744
PstNI	CAGNNNCTG	1 cut(s)	785
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SaqAI	TTAA	4 cut(s)	204, 576, 714, 840
SatI	GCNGC	3 cut(s)	349, 740, 777
Sau3AI	GATC	2 cut(s)	109, 493
Sau96I	GGNCC	2 cut(s)	123, 669
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
SfcI	CTRYAG	3 cut(s)	293, 707, 740
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	9 cut(s)	69, 342, 421, 549, 577, 590, 798, 850, 906
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	816
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	5 cut(s)	96, 108, 168, 465, 899
TasI	AATT	9 cut(s)	69, 342, 421, 549, 577, 590, 798, 850, 906
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	4 cut(s)	13, 165, 947, 998
Tru1I	TTAA	4 cut(s)	204, 576, 714, 840
Tru9I	TTAA	4 cut(s)	204, 576, 714, 840
TscAI	CASTG	2 cut(s)	433, 749
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	348, 739, 776
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	543, 809, 936
TspGWI	ACGGA	3 cut(s)	146, 275, 744
TspRI	CASTG	2 cut(s)	433, 749
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	4 cut(s)	69, 421, 549, 798
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.