RLG00000020018

ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
60079153 .. 60084628
5476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020018

Sequence Viewer

Length: 1095 bp
ATGGATCGCCTGGAGGGCCTGACGTCCTCCTCGACGATATCCAAGGGAAGGACGACGGCGGGGTCGACCCGGAGGGAGATCTGCCAGGTCAACAGGGAGGGGAAGAGCGAGGAAGCCGAGGAAGGCTTCCGGCGACTCCGGCGGAGGAGGGAAGCTGAACAGGTCGGGCAGATCGGCGGCGACCTTCCTCCTGGCTCTCTTGGTAGCCTCGTTCACAACCATGGTAGATCTGAGGGCCTAGCTTCTGTAGATCGTGAAGCGAAGAGCAATCGCCGGCCTGTTTTAGCAATTTTCAGAAGTACGGGCTCGGATCAGGTTCGGTCTCTATTTGTCGCCATCTCTTCCCTCCAAACAGCGGACATGGCTATGGCGATTCGTTCTGCACTCGCGAAGCTGGCGAGTAACTCTATTCATAAGAACAGAAGTGGGATTCTGATGCTTAGGGCTTTTGCTATCGACAAAAACCTCAATCGCCAAAGCCGGGCCGTTTCGGGGTTTCCTGCCGGAGGATTAGAGCCTGCCCGTTTCGCCACGGAAGAGTTCAACAAGCGAAAGAAAATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTTTATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCGAGCAAAAGTTTCGGTAAATTTCACCGATGGCATGTTTTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGTCCTATAGCACTATTTGATCACCTAGGGGAGGGCACAGAAAACTTTTTTGCTCTGAAGGACAATGAAGACAAAGCAGAGAGTCAAATTCCGATGTGTAAAAAGCAGGTCGAGCTGCGGCGGTTGGACTGGAAGCAACAGAGATCAATGGAAGGGGATGACCCGAAAATAGCAAAATCGGTCCCATCTGACCCGTTTCCCAATTATGAGGCAACAGTAACGACTGACTTGGTGGTAGCATCAAGAGTCCCTCCTCCGGCGGCGGTAATGGTGGTGGTGGTGGTGACTTCCACAAGCTTTCTTGAACGGTTTCATCCGCAGTGCCTGTGGCACTCGCAGTACTTCTGA

Protein Analysis

365

Amino Acids

40.43

Weight (kDa)

9.21

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AatII GACGTC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 844
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 389
AciI CCGC 9 cut(s) 59, 142, 177, 356, 865, 868, 1007, 1010, 1064
AclWI GGATC 2 cut(s) 12, 318
AcsI RAATTY 2 cut(s) 694, 834
AcuI CTGAAG 1 cut(s) 824
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 301, 1088
AfiI CCNNNNNNNGG 7 cut(s) 48, 355, 481, 492, 506, 778, 1003
AgsI TTSAA 2 cut(s) 544, 1052
AjnI CCWGG 3 cut(s) 9, 84, 190
AluBI AGCT 5 cut(s) 155, 242, 394, 862, 1044
AluI AGCT 5 cut(s) 155, 242, 394, 862, 1044
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 1 cut(s) 327
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 2 cut(s) 12, 318
AlwNI CAGNNNCTG 1 cut(s) 1072
AoxI GGCC 4 cut(s) 16, 235, 275, 483
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 2 cut(s) 621, 862
ApoI RAATTY 2 cut(s) 694, 834
Asp700I GAANNNNTTC 1 cut(s) 1056
AspA2I CCTAGG 1 cut(s) 772
AspS9I GGNCC 4 cut(s) 16, 235, 483, 928
AsuC2I CCSGG 2 cut(s) 70, 482
AsuHPI GGTGA 3 cut(s) 691, 761, 1042
AvaII GGWCC 1 cut(s) 928
AvrII CCTAGG 1 cut(s) 772
BaeGI GKGCMC 2 cut(s) 611, 785
BanII GRGCYC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 2 cut(s) 633, 849
BccI CCATC 4 cut(s) 344, 698, 737, 940
BceAI ACGGC 2 cut(s) 72, 470
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 3 cut(s) 11, 86, 192
BclI TGATCA 1 cut(s) 766
BcnI CCSGG 2 cut(s) 70, 482
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 2 cut(s) 239, 773
BfmI CTRYAG 3 cut(s) 246, 566, 753
BfuAI ACCTGC 1 cut(s) 844
BglI GCCNNNNNGGC 1 cut(s) 15
BglII AGATCT 2 cut(s) 78, 227
BisI GCNGC 5 cut(s) 178, 622, 863, 866, 1008
BlnI CCTAGG 1 cut(s) 772
BlsI GCNGC 5 cut(s) 179, 623, 864, 867, 1009
BmcAI AGTACT 1 cut(s) 1088
Bme1390I CCNGG 5 cut(s) 11, 70, 86, 192, 482
Bme18I GGWCC 1 cut(s) 928
BmgT120I GGNCC 4 cut(s) 16, 235, 483, 928
BmiI GGNNCC 1 cut(s) 930
BmrFI CCNGG 5 cut(s) 11, 70, 86, 192, 482
BmsI GCATC 4 cut(s) 426, 607, 643, 995
BpiI GAAGAC 1 cut(s) 822
BpmI CTGGAG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 70, 482
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 5 cut(s) 42, 117, 220, 531, 772
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 355, 481, 492, 506, 778, 1003
Bse118I RCCGGY 2 cut(s) 273, 656
Bse1I ACTGG 1 cut(s) 881
BseBI CCWGG 3 cut(s) 11, 86, 192
BseDI CCNNGG 5 cut(s) 42, 117, 220, 531, 772
BseGI GGATG 2 cut(s) 910, 1060
BseLI CCNNNNNNNGG 7 cut(s) 48, 355, 481, 492, 506, 778, 1003
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 881
BseRI GAGGAG 3 cut(s) 19, 160, 990
BseSI GKGCMC 2 cut(s) 611, 785
BseXI GCAGC 2 cut(s) 633, 849
BsgI GTGCAG 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 4 cut(s) 18, 237, 277, 485
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 8 cut(s) 70, 130, 139, 274, 481, 504, 657, 1004
BslFI GGGAC 2 cut(s) 914, 980
BslI CCNNNNNNNGG 7 cut(s) 48, 355, 481, 492, 506, 778, 1003
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 914, 980
BsnI GGCC 4 cut(s) 18, 237, 277, 485
Bso31I GGTCTC 1 cut(s) 327
Bsp1286I GDGCHC 3 cut(s) 308, 611, 785
Bsp143I GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
Bsp19I CCATGG 1 cut(s) 220
Bsp68I TCGCGA 1 cut(s) 389
BspACI CCGC 9 cut(s) 59, 142, 177, 356, 865, 868, 1007, 1010, 1064
BspANI GGCC 4 cut(s) 18, 237, 277, 485
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 930
BspMAI CTGCAG 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 844
BspPI GGATC 2 cut(s) 12, 318
BspQI GCTCTTC 2 cut(s) 98, 257
BspTNI GGTCTC 1 cut(s) 327
BsrFI RCCGGY 2 cut(s) 273, 656
BsrI ACTGG 1 cut(s) 881
BssAI RCCGGY 2 cut(s) 273, 656
BssECI CCNNGG 5 cut(s) 42, 117, 220, 531, 772
BssMI GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 3 cut(s) 42, 220, 772
Bst2UI CCWGG 3 cut(s) 11, 86, 192
Bst4CI ACNGT 2 cut(s) 964, 1056
Bst6I CTCTTC 4 cut(s) 98, 257, 346, 531
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 653
BstC8I GCNNGC 3 cut(s) 275, 396, 519
BstDEI CTNAG 2 cut(s) 231, 440
BstDSI CCRYGG 2 cut(s) 220, 531
BstENI CCTNNNNNAGG 2 cut(s) 504, 776
BstF5I GGATG 2 cut(s) 910, 1060
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 8 cut(s) 7, 81, 174, 230, 253, 313, 769, 893
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
BstMWI GCNNNNNNNGC 8 cut(s) 15, 139, 362, 395, 527, 653, 662, 859
BstNI CCWGG 3 cut(s) 11, 86, 192
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 5 cut(s) 9, 68, 84, 190, 480
BstSFI CTRYAG 3 cut(s) 246, 566, 753
BstSLI GKGCMC 2 cut(s) 611, 785
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 2 cut(s) 633, 849
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 2 cut(s) 78, 227
BstYI RGATCY 2 cut(s) 78, 227
BsuRI GGCC 4 cut(s) 18, 237, 277, 485
BtgI CCRYGG 2 cut(s) 220, 531
BtsCI GGATG 2 cut(s) 910, 1060
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 1 cut(s) 1073
BtuMI TCGCGA 1 cut(s) 389
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 3 cut(s) 275, 396, 519
CaiI CAGNNNCTG 1 cut(s) 1072
Cfr10I RCCGGY 2 cut(s) 273, 656
Cfr13I GGNCC 4 cut(s) 16, 235, 483, 928
Csp6I GTAC 2 cut(s) 300, 1087
CviAII CATG 3 cut(s) 221, 361, 709
CviQI GTAC 2 cut(s) 300, 1087
DdeI CTNAG 2 cut(s) 231, 440
DpnI GATC 8 cut(s) 6, 80, 173, 229, 252, 312, 768, 892
DpnII GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 4 cut(s) 98, 257, 346, 531
EarI CTCTTC 4 cut(s) 98, 257, 346, 531
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 3 cut(s) 42, 220, 772
Eco24I GRGCYC 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 928
Eco57I CTGAAG 1 cut(s) 824
EcoNI CCTNNNNNAGG 2 cut(s) 504, 776
EcoO109I RGGNCCY 2 cut(s) 16, 235
EcoRII CCWGG 3 cut(s) 9, 84, 190
EcoRV GATATC 1 cut(s) 39
EcoT14I CCWWGG 3 cut(s) 42, 220, 772
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 3 cut(s) 42, 220, 772
FaeI CATG 3 cut(s) 224, 364, 712
FaqI GGGAC 2 cut(s) 914, 980
FatI CATG 3 cut(s) 220, 360, 708
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 1 cut(s) 766
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 5 cut(s) 178, 622, 863, 866, 1008
FokI GGATG 2 cut(s) 917, 1047
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 5 cut(s) 178, 622, 863, 866, 1008
FspBI CTAG 2 cut(s) 239, 773
GluI GCNGC 5 cut(s) 178, 622, 863, 866, 1008
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 4 cut(s) 18, 237, 277, 485
HapII CCGG 8 cut(s) 70, 130, 139, 274, 481, 504, 657, 1004
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 3 cut(s) 224, 364, 712
HincII GTYRAC 2 cut(s) 66, 91
HindII GTYRAC 2 cut(s) 66, 91
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 5 cut(s) 135, 373, 430, 829, 993
HpaII CCGG 8 cut(s) 70, 130, 139, 274, 481, 504, 657, 1004
HphI GGTGA 3 cut(s) 691, 761, 1042
Hpy166II GTNNAC 4 cut(s) 66, 91, 214, 609
Hpy188I TCNGA 8 cut(s) 232, 296, 310, 435, 804, 840, 937, 1094
Hpy188III TCNNGA 4 cut(s) 254, 388, 990, 1049
Hpy8I GTNNAC 4 cut(s) 66, 91, 214, 609
Hpy99I CGWCG 2 cut(s) 37, 58
HpyAV CCTTC 5 cut(s) 42, 116, 194, 799, 893
HpyCH4III ACNGT 2 cut(s) 964, 1056
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 4 cut(s) 383, 562, 568, 609
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 139, 362, 395, 527, 653, 662, 859
HpyF3I CTNAG 2 cut(s) 231, 440
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 224, 364, 712
KroI GCCGGC 1 cut(s) 273
KroNI GCCGGC 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
LguI GCTCTTC 2 cut(s) 98, 257
Lsp1109I GCAGC 2 cut(s) 633, 849
LweI GCATC 4 cut(s) 426, 607, 643, 995
MaeI CTAG 2 cut(s) 239, 773
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 3 cut(s) 401, 964, 1030
MalI GATC 8 cut(s) 6, 80, 173, 229, 252, 312, 768, 892
MboI GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
MboII GAAGA 5 cut(s) 115, 274, 333, 548, 827
MflI RGATCY 2 cut(s) 78, 227
MhlI GDGCHC 3 cut(s) 308, 611, 785
MluCI AATT 5 cut(s) 288, 615, 694, 834, 949
MlyI GAGTC 3 cut(s) 129, 838, 1002
MmeI TCCRAC 1 cut(s) 852
MroNI GCCGGC 1 cut(s) 273
MroXI GAANNNNTTC 1 cut(s) 1056
MslI CAYNNNNRTG 2 cut(s) 219, 365
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 8 cut(s) 70, 130, 139, 274, 481, 504, 657, 1004
MspR9I CCNGG 5 cut(s) 11, 70, 86, 192, 482
MvaI CCWGG 3 cut(s) 11, 86, 192
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 8 cut(s) 15, 139, 362, 395, 527, 653, 662, 859
NaeI GCCGGC 1 cut(s) 275
NciI CCSGG 2 cut(s) 70, 482
NcoI CCATGG 1 cut(s) 220
NdeII GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
NgoMIV GCCGGC 1 cut(s) 273
NlaIII CATG 3 cut(s) 224, 364, 712
NlaIV GGNNCC 1 cut(s) 930
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 1030
NruI TCGCGA 1 cut(s) 389
NspI RCATGY 1 cut(s) 712
PciSI GCTCTTC 2 cut(s) 98, 257
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 62
PdiI GCCGGC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 2 cut(s) 373, 430
PkrI GCNGC 5 cut(s) 179, 623, 864, 867, 1009
PleI GAGTC 3 cut(s) 129, 837, 1001
PpsI GAGTC 3 cut(s) 129, 837, 1001
Psp6I CCWGG 3 cut(s) 9, 84, 190
PspGI CCWGG 3 cut(s) 9, 84, 190
PspN4I GGNNCC 1 cut(s) 930
PspPI GGNCC 4 cut(s) 16, 235, 483, 928
PstI CTGCAG 1 cut(s) 570
PstNI CAGNNNCTG 1 cut(s) 1072
PsuI RGATCY 2 cut(s) 78, 227
RruI TCGCGA 1 cut(s) 389
RsaI GTAC 2 cut(s) 301, 1088
RsaNI GTAC 2 cut(s) 300, 1087
RseI CAYNNNNRTG 2 cut(s) 219, 365
SalI GTCGAC 1 cut(s) 64
SapI GCTCTTC 2 cut(s) 98, 257
SatI GCNGC 5 cut(s) 178, 622, 863, 866, 1008
Sau3AI GATC 8 cut(s) 4, 78, 171, 227, 250, 310, 766, 890
Sau96I GGNCC 4 cut(s) 16, 235, 483, 928
ScaI AGTACT 1 cut(s) 1088
SchI GAGTC 3 cut(s) 129, 838, 1002
ScrFI CCNGG 5 cut(s) 11, 70, 86, 192, 482
SduI GDGCHC 3 cut(s) 308, 611, 785
SfaNI GCATC 4 cut(s) 426, 607, 643, 995
SfcI CTRYAG 3 cut(s) 246, 566, 753
SinI GGWCC 1 cut(s) 928
SmiMI CAYNNNNRTG 2 cut(s) 219, 365
Sse9I AATT 5 cut(s) 288, 615, 694, 834, 949
SsiI CCGC 9 cut(s) 59, 142, 177, 356, 865, 868, 1007, 1010, 1064
SspMI CTAG 2 cut(s) 239, 773
StyD4I CCNGG 5 cut(s) 9, 68, 84, 190, 480
StyI CCWWGG 3 cut(s) 42, 220, 772
TaaI ACNGT 2 cut(s) 964, 1056
TaiI ACGT 1 cut(s) 26
TaqI TCGA 5 cut(s) 32, 65, 456, 738, 858
TaqII GACCGA 2 cut(s) 309, 916
TasI AATT 5 cut(s) 288, 615, 694, 834, 949
TatI WGTACW 1 cut(s) 1086
TauI GCSGC 3 cut(s) 180, 868, 1010
TfiI GAWTC 2 cut(s) 373, 430
TscAI CASTG 1 cut(s) 1073
TseFI GTSAC 1 cut(s) 1030
TseI GCWGC 2 cut(s) 621, 862
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 3 cut(s) 401, 828, 1049
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 1073
VneI GTGCAC 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 928
XagI CCTNNNNNAGG 2 cut(s) 504, 776
XapI RAATTY 2 cut(s) 694, 834
XceI RCATGY 1 cut(s) 712
XmaJI CCTAGG 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 2 cut(s) 239, 773
ZraI GACGTC 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.