Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

13703360 .. 13705689

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1149700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCTCTTCGTTCTGTGCTCCGAAAGCTGGGTACTAATCGATCCACTTACAGTAACATTAGAAGCGCCGTGCTTGGGGCTTCTCAGAGCGCGGCTGTCAACAACAATTTCAGAAATCCCGAGGCCAAGCCCGTGTCTTCAGTAGAGTCTAGTGCTGGTTATTGTTGTCACCATGTTTCTGATGATGGATACCTCGCAATGCAATCGAGGACGACGGCCCCTCGCTTTCCCTGTTCTGGGCAGGAATTTGATTATTATATCAATTTAAAAGGACGGGGATTAGAGGCTGCCCGTTTTGCCACACAAGAGTTCAACAAGCAAAAGAATGCCCAACTGCAGTTTGTTAGAATGCTGTGTGCTAACAGGCGGAGGCTTAACAATGGTCCTCATTACATGTATTTTATATTGCTTGAGGCAATGGATGGTGGTGAGCTGAAAGTCTACCAGGCACATGTTTCGCCAGATTTCACCGGCGGCATGTCTTTGCAATTCCTTGGTCGTGTCGTGGAGAAGGGGTCTCCTGTAAAATTATTTGATCCCCTGGATAACTTTTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

187

Amino Acids

20.86

Weight (kDa)

9.25

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	92, 367, 474
AclWI	GGATC	2 cut(s)	36, 530
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	4 cut(s)	28, 75, 236, 237
AflIII	ACRYGT	2 cut(s)	393, 451
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	444, 540
AluBI	AGCT	2 cut(s)	28, 433
AluI	AGCT	2 cut(s)	28, 433
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	9, 522
AlwI	GGATC	2 cut(s)	36, 530
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	123, 216
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	68, 92
AspS9I	GGNCC	2 cut(s)	217, 383
AsuHPI	GGTGA	3 cut(s)	161, 440, 460
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	179, 416
BceAI	ACGGC	2 cut(s)	53, 231
BcgI	CGANNNNNNTGC	4 cut(s)	186, 220, 438, 472
BciT130I	CCWGG	2 cut(s)	446, 542
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	9, 522
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	93, 288, 475
BlsI	GCNGC	3 cut(s)	94, 289, 476
Bme1390I	CCNGG	2 cut(s)	446, 542
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	217, 383
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	446, 542
BpiI	GAAGAC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	120, 493, 540
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 75, 236, 237
Bse118I	RCCGGY	1 cut(s)	470
Bse3DI	GCAATG	2 cut(s)	204, 423
BseBI	CCWGG	2 cut(s)	446, 542
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	120, 493, 540
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	4 cut(s)	28, 75, 236, 237
BseMI	GCAATG	2 cut(s)	204, 423
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	125, 218
BshVI	ATCGAT	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	4 cut(s)	28, 75, 236, 237
BsmAI	GTCTC	2 cut(s)	9, 522
BsmI	GAATGC	2 cut(s)	331, 354
BsnI	GGCC	2 cut(s)	125, 218
Bso31I	GGTCTC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	41, 535
BspACI	CCGC	3 cut(s)	92, 367, 474
BspANI	GGCC	2 cut(s)	125, 218
BspCNI	CTCAG	1 cut(s)	97
BspDI	ATCGAT	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	2 cut(s)	36, 530
BspTNI	GGTCTC	1 cut(s)	522
BsrDI	GCAATG	2 cut(s)	204, 423
BsrFI	RCCGGY	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	120, 493, 540
BssMI	GATC	2 cut(s)	41, 535
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	2 cut(s)	446, 542
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	68, 92
BstKTI	GATC	2 cut(s)	44, 538
BstMAI	GTCTC	2 cut(s)	9, 522
BstMBI	GATC	2 cut(s)	41, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 296
BstNI	CCWGG	2 cut(s)	446, 542
BstNSI	RCATGY	3 cut(s)	397, 455, 481
BstSCI	CCNGG	2 cut(s)	444, 540
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	125, 218
BsuTUI	ATCGAT	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	427
CfoI	GCGC	2 cut(s)	68, 92
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	217, 383
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	4 cut(s)	173, 394, 452, 478
CviJI	RGCY	9 cut(s)	28, 80, 95, 125, 130, 218, 287, 373, 433
CviKI_1	RGCY	9 cut(s)	28, 80, 95, 125, 130, 218, 287, 373, 433
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	43, 537
DpnII	GATC	2 cut(s)	41, 535
DraI	TTTAAA	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	444, 540
EcoT14I	CCWWGG	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	4 cut(s)	176, 397, 455, 481
FaiI	YATR	6 cut(s)	174, 258, 395, 404, 453, 479
FatI	CATG	4 cut(s)	172, 393, 451, 477
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	93, 288, 475
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	3 cut(s)	93, 288, 475
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	67, 91
GluI	GCNGC	3 cut(s)	93, 288, 475
GsaI	CCCAGC	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	125, 218
HapII	CCGG	1 cut(s)	471
HhaI	GCGC	2 cut(s)	68, 92
Hin1II	CATG	4 cut(s)	176, 397, 455, 481
Hin6I	GCGC	2 cut(s)	66, 90
HinP1I	GCGC	2 cut(s)	66, 90
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	3 cut(s)	161, 440, 460
Hpy166II	GTNNAC	2 cut(s)	100, 442
Hpy188I	TCNGA	4 cut(s)	23, 87, 113, 181
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	100, 442
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	505
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	202, 337, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 296
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	176, 397, 455, 481
HspAI	GCGC	2 cut(s)	66, 90
Kzo9I	GATC	2 cut(s)	41, 535
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	53, 167
MalI	GATC	2 cut(s)	43, 537
MboI	GATC	2 cut(s)	41, 535
MboII	GAAGA	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	5 cut(s)	106, 245, 262, 488, 527
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	8 cut(s)	115, 201, 203, 231, 277, 363, 396, 406
MseI	TTAA	2 cut(s)	266, 375
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	446, 542
Mva1269I	GAATGC	2 cut(s)	331, 354
MvaI	CCWGG	2 cut(s)	446, 542
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	25, 296
NdeII	GATC	2 cut(s)	41, 535
NlaIII	CATG	4 cut(s)	176, 397, 455, 481
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	3 cut(s)	397, 455, 481
PciI	ACATGT	2 cut(s)	393, 451
PctI	GAATGC	2 cut(s)	331, 354
PkrI	GCNGC	3 cut(s)	94, 289, 476
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PscI	ACATGT	2 cut(s)	393, 451
Psp6I	CCWGG	2 cut(s)	444, 540
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	444, 540
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	217, 383
PstI	CTGCAG	1 cut(s)	339
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	266, 375
SatI	GCNGC	3 cut(s)	93, 288, 475
Sau3AI	GATC	2 cut(s)	41, 535
Sau96I	GGNCC	2 cut(s)	217, 383
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	446, 542
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	30, 195, 435
SfcI	CTRYAG	1 cut(s)	335
SgrAI	CRCCGGYG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	5 cut(s)	106, 245, 262, 488, 527
SsiI	CCGC	3 cut(s)	92, 367, 474
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	444, 540
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	40, 206
TasI	AATT	5 cut(s)	106, 245, 262, 488, 527
TauI	GCSGC	2 cut(s)	95, 477
Tru1I	TTAA	2 cut(s)	266, 375
Tru9I	TTAA	2 cut(s)	266, 375
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	3 cut(s)	397, 455, 481
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.