Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

79841593 .. 79843944

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCATGGCGATTCGTTCTGCACTCGCAAAGATGGCGACTAACTCTATTCACAACAACAGAAGTGGAATTCTGACGCTTAGGGCTTTTTCCATGGACAAAAAACCCAAACCCCAAAACGACGCCGTTTCGGGGTTTCCCGCTGGTCATTACTTCCGCCACCGATTCGATTATTCAAGCCATAAAACCAAAAAAAAAAAGAAAAGAGCCAGCTGCCTGTTTCGCCATCGAAGAGTTCAACAAGCGAAAGAAAACTTCTTTGCTCAGAAGGACCATGAAGACAAAGCGGAGAATCAAATTCCAATCTGTAAAAAGCAGAGACTTCATTGTTCTAATAACTCATGTATCAAACTATGTTGTATCGAACCTGCATATGACTATTCAAATAATGGCAAGATGCAAAGATTTGGACATTGGGCCGTGGAAATGTTCAACGAGGAAAAGAATGTTGAACTGCAGTGTGTGAGAGTCGTGAGCGGAAGCAAGCTGTGGTTGGAGGATTTTTTTTTTTATCTAACATTGGAGGCAGCTGAGGCTGGTGTGATGAAAATTTACCATGCAGAACTGTTTTTGCCAGTTCTGCCAGGTAACAAGAAGATTAAGCATCCCAATTCCTGGCTCAATTTGTTTGGCCATGTCGATAATAATGGGACATTGTCAATACTAATTGATAAGAGGCATGAAGAATGCAGAAAACAGATTTTGGAATCTGAAGATATTAATATTTTTACAGCAGTCCAGCAAGCACTAGTAATCGGCTCTTGGAGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.74

Weight (kDa)

9.4

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	615
AccBSI	CCGCTC	1 cut(s)	477
AciI	CCGC	4 cut(s)	141, 157, 287, 477
AcoI	YGGCCR	2 cut(s)	3, 631
AcsI	RAATTY	3 cut(s)	69, 297, 549
AcuI	CTGAAG	1 cut(s)	732
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	132, 615
AgsI	TTSAA	5 cut(s)	177, 239, 384, 433, 452
AhlI	ACTAGT	1 cut(s)	748
AjnI	CCWGG	2 cut(s)	583, 614
AluBI	AGCT	3 cut(s)	213, 487, 530
AluI	AGCT	3 cut(s)	213, 487, 530
Alw26I	GTCTC	2 cut(s)	313, 762
AoxI	GGCC	3 cut(s)	3, 417, 631
ApeKI	GCWGC	2 cut(s)	213, 527
ApoI	RAATTY	3 cut(s)	69, 297, 549
AseI	ATTAAT	1 cut(s)	720
AspS9I	GGNCC	2 cut(s)	271, 417
AvaII	GGWCC	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
BalI	TGGCCA	2 cut(s)	5, 633
BbsI	GAAGAC	1 cut(s)	285
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	200, 539
BccI	CCATC	2 cut(s)	28, 234
BceAI	ACGGC	2 cut(s)	110, 404
BciT130I	CCWGG	2 cut(s)	585, 616
BcoDI	GTCTC	2 cut(s)	313, 762
BcuI	ACTAGT	1 cut(s)	748
BfaI	CTAG	2 cut(s)	749, 772
BfmI	CTRYAG	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	2 cut(s)	214, 528
BlsI	GCNGC	2 cut(s)	215, 529
Bme1390I	CCNGG	2 cut(s)	585, 616
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	271, 417
BmrFI	CCNGG	2 cut(s)	585, 616
BmsI	GCATC	2 cut(s)	387, 613
BpiI	GAAGAC	1 cut(s)	285
Bpu10I	CCTNAGC	2 cut(s)	80, 531
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	6, 93, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 615
Bse1I	ACTGG	1 cut(s)	575
BseBI	CCWGG	2 cut(s)	585, 616
BseDI	CCNNGG	3 cut(s)	6, 93, 420
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	2 cut(s)	132, 615
BseMII	CTCAG	2 cut(s)	278, 522
BseNI	ACTGG	1 cut(s)	575
BseXI	GCAGC	2 cut(s)	200, 539
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	5, 419, 633
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	132, 615
BsmAI	GTCTC	2 cut(s)	313, 762
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	3 cut(s)	5, 419, 633
Bsp19I	CCATGG	2 cut(s)	6, 93
BspACI	CCGC	4 cut(s)	141, 157, 287, 477
BspANI	GGCC	3 cut(s)	5, 419, 633
BspCNI	CTCAG	2 cut(s)	277, 523
BspMAI	CTGCAG	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	376
BsrBI	CCGCTC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	6, 93, 420
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	6, 93
Bst2UI	CCWGG	2 cut(s)	585, 616
Bst4CI	ACNGT	1 cut(s)	567
Bst6I	CTCTTC	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	211, 485, 744
BstDEI	CTNAG	3 cut(s)	80, 264, 531
BstDSI	CCRYGG	3 cut(s)	6, 93, 420
BstF5I	GGATG	1 cut(s)	604
BstMAI	GTCTC	2 cut(s)	313, 762
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 222, 533, 580
BstNI	CCWGG	2 cut(s)	585, 616
BstSCI	CCNGG	2 cut(s)	583, 614
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	200, 539
BstV2I	GAAGAC	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	5, 419, 633
BtgI	CCRYGG	3 cut(s)	6, 93, 420
BtsCI	GGATG	1 cut(s)	604
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	3 cut(s)	211, 485, 744
Cfr13I	GGNCC	2 cut(s)	271, 417
CseI	GACGC	2 cut(s)	85, 131
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	7 cut(s)	7, 94, 275, 342, 557, 635, 680
DdeI	CTNAG	3 cut(s)	80, 264, 531
EaeI	YGGCCR	2 cut(s)	3, 631
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	6, 93
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	583, 614
EcoT14I	CCWWGG	2 cut(s)	6, 93
ErhI	CCWWGG	2 cut(s)	6, 93
FaeI	CATG	7 cut(s)	10, 97, 278, 345, 560, 638, 683
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	7 cut(s)	6, 93, 274, 341, 556, 634, 679
FauI	CCCGC	1 cut(s)	148
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	214, 528
FokI	GGATG	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	214, 528
FspBI	CTAG	2 cut(s)	749, 772
GluI	GCNGC	2 cut(s)	214, 528
HaeIII	GGCC	3 cut(s)	5, 419, 633
HgaI	GACGC	2 cut(s)	85, 131
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	7 cut(s)	10, 97, 278, 345, 560, 638, 683
HinfI	GANTC	5 cut(s)	13, 165, 292, 468, 707
Hpy188I	TCNGA	3 cut(s)	75, 267, 712
Hpy188III	TCNNGA	1 cut(s)	472
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	567
HpyCH4V	TGCA	6 cut(s)	23, 371, 400, 457, 560, 690
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 222, 533, 580
HpyF3I	CTNAG	3 cut(s)	80, 264, 531
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	7 cut(s)	10, 97, 278, 345, 560, 638, 683
Lsp1109I	GCAGC	2 cut(s)	200, 539
LweI	GCATC	2 cut(s)	387, 613
MaeI	CTAG	2 cut(s)	749, 772
MaeIII	GTNAC	1 cut(s)	587
MbiI	CCGCTC	1 cut(s)	477
MboII	GAAGA	5 cut(s)	243, 290, 607, 695, 725
MlsI	TGGCCA	2 cut(s)	5, 633
MluCI	AATT	6 cut(s)	69, 297, 549, 610, 622, 666
MluNI	TGGCCA	2 cut(s)	5, 633
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	5 cut(s)	430, 490, 517, 526, 669
Mox20I	TGGCCA	2 cut(s)	5, 633
MscI	TGGCCA	2 cut(s)	5, 633
MseI	TTAA	2 cut(s)	600, 720
Msp20I	TGGCCA	2 cut(s)	5, 633
MspA1I	CMGCKG	3 cut(s)	143, 213, 530
MspR9I	CCNGG	2 cut(s)	585, 616
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	2 cut(s)	585, 616
MwoI	GCNNNNNNNGC	4 cut(s)	35, 222, 533, 580
NcoI	CCATGG	2 cut(s)	6, 93
NdeI	CATATG	1 cut(s)	373
NlaIII	CATG	7 cut(s)	10, 97, 278, 345, 560, 638, 683
PctI	GAATGC	1 cut(s)	692
PfeI	GAWTC	4 cut(s)	13, 165, 292, 707
PflFI	GACNNNGTC	1 cut(s)	655
PflMI	CCANNNNNTGG	1 cut(s)	615
PkrI	GCNGC	2 cut(s)	215, 529
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	720
Psp6I	CCWGG	2 cut(s)	583, 614
PspGI	CCWGG	2 cut(s)	583, 614
PspPI	GGNCC	2 cut(s)	271, 417
PstI	CTGCAG	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	655
PvuII	CAGCTG	2 cut(s)	213, 530
SaqAI	TTAA	2 cut(s)	600, 720
SatI	GCNGC	2 cut(s)	214, 528
Sau96I	GGNCC	2 cut(s)	271, 417
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	585, 616
SetI	ASST	5 cut(s)	215, 370, 489, 532, 589
SfaNI	GCATC	2 cut(s)	387, 613
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	748
Sse9I	AATT	6 cut(s)	69, 297, 549, 610, 622, 666
SsiI	CCGC	4 cut(s)	141, 157, 287, 477
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	2 cut(s)	749, 772
StyD4I	CCNGG	2 cut(s)	583, 614
StyI	CCWWGG	2 cut(s)	6, 93
TaaI	ACNGT	1 cut(s)	567
TaqI	TCGA	4 cut(s)	168, 229, 363, 639
TasI	AATT	6 cut(s)	69, 297, 549, 610, 622, 666
TfiI	GAWTC	4 cut(s)	13, 165, 292, 707
Tru1I	TTAA	2 cut(s)	600, 720
Tru9I	TTAA	2 cut(s)	600, 720
TscAI	CASTG	1 cut(s)	464
TseI	GCWGC	2 cut(s)	213, 527
TspDTI	ATGAA	4 cut(s)	291, 314, 560, 696
TspRI	CASTG	1 cut(s)	464
Tth111I	GACNNNGTC	1 cut(s)	655
Van91I	CCANNNNNTGG	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	3 cut(s)	69, 297, 549
XspI	CTAG	2 cut(s)	749, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.