Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

62554716 .. 62558158

Gene Structure 3443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCTTAACCTCCGCCCTAGCCTCGCCGCTCTTGCAACCCTCCGGCAGAGGAACCGGGGTTTCGTAGCTATCGCGGTCCGGAGCTTGATGTTAACGGGTGTTCTTCTCGATGTCCACGACGACCTTGAAGATTTCCTTCCCGAATCCCGAAAGGCTCTCGTGATGGTGAAGTCGTCATCGGAGTCTTTGATCCGGATGGCGGGGAGGGGACCTTTGTCGTTGGGATCGTTCCGATCGGCCATGAAGATGTGGTACCTTATGGCGGCAGAGGCGGTGGTGGAGATTGACGGTTGTGATGGGGACATTGATTTTGATAATAGTTCTCCTGTGGTATCTGATTATTATATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCATGGAAGAGTTCAACAAGCGAAAGATTAATGATACCTTTAGGCACATAGGCTTCACAGGAATTAGCAGCCTATATGTTATACCATTGGAGGCAGTTGATGCCGGAGTGGCTAAACTTTACCAAGCAAAAGTCTCGGTAAATTTCACTGACGGCATGTTTTTGGAATGGTTCTGTCTTGTCATTGACGATGGGTGTCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTCCTCAGAACGACCATGAAGTCAAAGCGGAGAATCAAACTCCGATGTGTAAAAAGAAGTTTGCAAGAGTGCTGAGCGGAAGCAAGCTGCTGCGGGATGATTTCTTTTATCTAACGTTAGAGGCAGCTGAGGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTTCCAGGTAAAAAGAAGATTAAGCATCCCAATTCCAGGCTCAACCTGTTTGGCCATGTCGTTGATAGTGGGAGACTGTCAATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGTATCTGAAGATATTATTACAGCAAACCAGCAAGGTTACTGCCGTTACAAGGATGTCGATAATTTCATACCAGCCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

330

Amino Acids

37.27

Weight (kDa)

5.72

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccBSI	CCGCTC	2 cut(s)	29, 687
AccII	CGCG	1 cut(s)	74
AccIII	TCCGGA	2 cut(s)	78, 192
AciI	CCGC	9 cut(s)	13, 27, 74, 200, 263, 272, 638, 687, 703
AclI	AACGTT	1 cut(s)	725
AclWI	GGATC	2 cut(s)	184, 232
AcoI	YGGCCR	2 cut(s)	237, 829
AcsI	RAATTY	2 cut(s)	520, 756
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	199, 262, 813, 952
AgsI	TTSAA	2 cut(s)	128, 394
AjnI	CCWGG	2 cut(s)	781, 812
AluBI	AGCT	4 cut(s)	68, 84, 697, 737
AluI	AGCT	4 cut(s)	68, 84, 697, 737
Alw26I	GTCTC	2 cut(s)	517, 844
AlwI	GGATC	2 cut(s)	184, 232
Aor13HI	TCCGGA	2 cut(s)	78, 192
AoxI	GGCC	2 cut(s)	237, 829
ApeKI	GCWGC	4 cut(s)	447, 697, 700, 734
ApoI	RAATTY	2 cut(s)	520, 756
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AseI	ATTAAT	1 cut(s)	408
Asp718I	GGTACC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	76, 209
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	178, 587
AvaII	GGWCC	2 cut(s)	76, 209
BalI	TGGCCA	1 cut(s)	831
BanI	GGYRCC	1 cut(s)	252
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	738
BbvI	GCAGC	4 cut(s)	459, 684, 687, 746
BccI	CCATC	4 cut(s)	157, 190, 290, 563
BceAI	ACGGC	2 cut(s)	547, 930
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BciT130I	CCWGG	2 cut(s)	783, 814
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	517, 844
BfaI	CTAG	2 cut(s)	18, 599
BfmI	CTRYAG	1 cut(s)	579
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	6 cut(s)	27, 264, 448, 698, 701, 735
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	6 cut(s)	28, 265, 449, 699, 702, 736
Bme1390I	CCNGG	3 cut(s)	56, 783, 814
Bme18I	GGWCC	2 cut(s)	76, 209
BmgT120I	GGNCC	2 cut(s)	76, 209
BmiI	GGNNCC	3 cut(s)	53, 210, 254
BmrFI	CCNGG	3 cut(s)	56, 783, 814
BmsI	GCATC	2 cut(s)	469, 811
BoxI	GACNNNNGTC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	55, 381
BsaWI	WCCGGW	2 cut(s)	78, 192
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 262, 813, 952
BseAI	TCCGGA	2 cut(s)	78, 192
BseBI	CCWGG	2 cut(s)	783, 814
BseDI	CCNNGG	2 cut(s)	55, 381
BseGI	GGATG	4 cut(s)	201, 712, 802, 961
BseLI	CCNNNNNNNGG	4 cut(s)	199, 262, 813, 952
BseMII	CTCAG	3 cut(s)	629, 674, 729
BseXI	GCAGC	4 cut(s)	459, 684, 687, 746
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	239, 831
BshNI	GGYRCC	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	236
BsiSI	CCGG	5 cut(s)	43, 55, 79, 193, 483
BslFI	GGGAC	2 cut(s)	222, 314
BslI	CCNNNNNNNGG	4 cut(s)	199, 262, 813, 952
BsmAI	GTCTC	2 cut(s)	517, 844
BsmFI	GGGAC	2 cut(s)	222, 314
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	2 cut(s)	239, 831
Bsp13I	TCCGGA	2 cut(s)	78, 192
Bsp143I	GATC	4 cut(s)	189, 224, 233, 592
Bsp1720I	GCTNAGC	1 cut(s)	683
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	9 cut(s)	13, 27, 74, 200, 263, 272, 638, 687, 703
BspANI	GGCC	2 cut(s)	239, 831
BspCNI	CTCAG	3 cut(s)	628, 675, 730
BspEI	TCCGGA	2 cut(s)	78, 192
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	53, 210, 254
BspPI	GGATC	2 cut(s)	184, 232
BspT107I	GGYRCC	1 cut(s)	252
BsrBI	CCGCTC	2 cut(s)	29, 687
BssECI	CCNNGG	2 cut(s)	55, 381
BssMI	GATC	4 cut(s)	189, 224, 233, 592
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	783, 814
Bst4CI	ACNGT	3 cut(s)	290, 774, 855
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	369, 695
BstDEI	CTNAG	3 cut(s)	615, 683, 738
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	4 cut(s)	201, 712, 802, 961
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	4 cut(s)	192, 227, 236, 595
BstMAI	GTCTC	2 cut(s)	517, 844
BstMBI	GATC	4 cut(s)	189, 224, 233, 592
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 269, 377, 479, 488, 740
BstNI	CCWGG	2 cut(s)	783, 814
BstNSI	RCATGY	1 cut(s)	538
BstPAI	GACNNNNGTC	1 cut(s)	214
BstSCI	CCNGG	3 cut(s)	54, 781, 812
BstSFI	CTRYAG	1 cut(s)	579
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	4 cut(s)	459, 684, 687, 746
BsuRI	GGCC	2 cut(s)	239, 831
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	201, 712, 802, 961
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	369, 695
Cfr13I	GGNCC	2 cut(s)	76, 209
CpoI	CGGWCCG	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	253
CspI	CGGWCCG	1 cut(s)	76
CviAII	CATG	6 cut(s)	241, 382, 535, 626, 833, 878
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	615, 683, 738
DpnI	GATC	4 cut(s)	191, 226, 235, 594
DpnII	GATC	4 cut(s)	189, 224, 233, 592
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	2 cut(s)	237, 829
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	76, 209
Eco57I	CTGAAG	1 cut(s)	930
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	781, 812
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	6 cut(s)	244, 385, 538, 629, 836, 881
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	2 cut(s)	222, 314
FatI	CATG	6 cut(s)	240, 381, 534, 625, 832, 877
FauI	CCCGC	2 cut(s)	193, 696
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	6 cut(s)	27, 264, 448, 698, 701, 735
FokI	GGATG	4 cut(s)	208, 719, 789, 968
Fsp4HI	GCNGC	6 cut(s)	27, 264, 448, 698, 701, 735
FspBI	CTAG	2 cut(s)	18, 599
GluI	GCNGC	6 cut(s)	27, 264, 448, 698, 701, 735
HaeIII	GGCC	2 cut(s)	239, 831
HapII	CCGG	5 cut(s)	43, 55, 79, 193, 483
Hin1II	CATG	6 cut(s)	244, 385, 538, 629, 836, 881
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	143, 182, 643
HpaI	GTTAAC	1 cut(s)	93
HpaII	CCGG	5 cut(s)	43, 55, 79, 193, 483
HphI	GGTGA	2 cut(s)	178, 587
Hpy166II	GTNNAC	2 cut(s)	93, 115
Hpy188I	TCNGA	6 cut(s)	181, 233, 337, 618, 654, 910
Hpy188III	TCNNGA	6 cut(s)	79, 107, 140, 147, 160, 193
Hpy8I	GTNNAC	2 cut(s)	93, 115
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	3 cut(s)	290, 774, 855
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	3 cut(s)	35, 674, 888
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 269, 377, 479, 488, 740
HpyF3I	CTNAG	3 cut(s)	615, 683, 738
HpySE526I	ACGT	1 cut(s)	725
Hsp92II	CATG	6 cut(s)	244, 385, 538, 629, 836, 881
Kpn2I	TCCGGA	2 cut(s)	78, 192
KpnI	GGTACC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	592
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	189, 224, 233, 592
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	4 cut(s)	459, 684, 687, 746
LweI	GCATC	2 cut(s)	469, 811
MaeI	CTAG	2 cut(s)	18, 599
MaeII	ACGT	1 cut(s)	725
MaeIII	GTNAC	2 cut(s)	938, 947
MalI	GATC	4 cut(s)	191, 226, 235, 594
MbiI	CCGCTC	2 cut(s)	29, 687
MboI	GATC	4 cut(s)	189, 224, 233, 592
MboII	GAAGA	7 cut(s)	95, 140, 256, 398, 805, 893, 923
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	6 cut(s)	441, 520, 756, 808, 864, 964
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	831
MroI	TCCGGA	2 cut(s)	78, 192
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	4 cut(s)	6, 92, 408, 798
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	5 cut(s)	43, 55, 79, 193, 483
MspR9I	CCNGG	3 cut(s)	56, 783, 814
Mva1269I	GAATGC	1 cut(s)	890
MvaI	CCWGG	2 cut(s)	783, 814
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	6 cut(s)	32, 269, 377, 479, 488, 740
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	4 cut(s)	189, 224, 233, 592
NlaIII	CATG	6 cut(s)	244, 385, 538, 629, 836, 881
NlaIV	GGNNCC	3 cut(s)	53, 210, 254
NspI	RCATGY	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 224
PctI	GAATGC	1 cut(s)	890
PfeI	GAWTC	2 cut(s)	143, 643
PkrI	GCNGC	6 cut(s)	28, 265, 449, 699, 702, 736
Ple19I	CGATCG	1 cut(s)	236
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	209
PshAI	GACNNNNGTC	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	408
Psp1406I	AACGTT	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	781, 812
PspGI	CCWGG	2 cut(s)	781, 812
PspN4I	GGNNCC	3 cut(s)	53, 210, 254
PspPI	GGNCC	2 cut(s)	76, 209
PspPPI	RGGWCCY	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	245
Rsr2I	CGGWCCG	1 cut(s)	76
RsrII	CGGWCCG	1 cut(s)	76
SaqAI	TTAA	4 cut(s)	6, 92, 408, 798
SatI	GCNGC	6 cut(s)	27, 264, 448, 698, 701, 735
Sau3AI	GATC	4 cut(s)	189, 224, 233, 592
Sau96I	GGNCC	2 cut(s)	76, 209
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	56, 783, 814
SfaNI	GCATC	2 cut(s)	469, 811
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	2 cut(s)	76, 209
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	6 cut(s)	441, 520, 756, 808, 864, 964
SsiI	CCGC	9 cut(s)	13, 27, 74, 200, 263, 272, 638, 687, 703
SspMI	CTAG	2 cut(s)	18, 599
StyD4I	CCNGG	3 cut(s)	54, 781, 812
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	290, 774, 855
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	2 cut(s)	108, 960
TasI	AATT	6 cut(s)	441, 520, 756, 808, 864, 964
TauI	GCSGC	2 cut(s)	29, 266
TfiI	GAWTC	2 cut(s)	143, 643
Tru1I	TTAA	4 cut(s)	6, 92, 408, 798
Tru9I	TTAA	4 cut(s)	6, 92, 408, 798
TscAI	CASTG	1 cut(s)	532
TseI	GCWGC	4 cut(s)	447, 697, 700, 734
TspDTI	ATGAA	5 cut(s)	257, 642, 767, 894, 958
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	2 cut(s)	76, 209
VspI	ATTAAT	1 cut(s)	408
XapI	RAATTY	2 cut(s)	520, 756
XceI	RCATGY	1 cut(s)	538
XspI	CTAG	2 cut(s)	18, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.