Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8311305.1

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 780

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8311305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 502 bp

atggctatggcgatttgttctgcactcgcaaagctggcgagtaactctattcacaagaacagaagtggaattctgatgcttagggcttttgctatcgacaaaaacctcgatcgccaaagccgggccgtttcggggtttcctgccggtcattacttccgtcaccgattcgattatggaagctataaaagcaaaaaaaaggagcttaaggtatttgattattatatggatttaggaggattagagcctgcccgtttcgccatggaagagttcaacaagcgaaagaaaatgcaactgcagtttgtgagagttgtcaaggcacataggcatctgctgtgcacaggaattagcagcctttatgatataacattggaggcagttgatgccggtgtcgctaaactttaccaagcaaaagtttcagtaaatttcactgatggcatgtttttggaatggttctgtcttgttgtcgatgatgggtgccctatagcactatttgatcacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

167

Amino Acids

19.0

Weight (kDa)

9.28

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	69, 421
AfiI	CCNNNNNNNGG	2 cut(s)	121, 132
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	3 cut(s)	34, 180, 202
AluI	AGCT	3 cut(s)	34, 180, 202
Alw21I	GWGCWC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	123
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	348
ApoI	RAATTY	2 cut(s)	69, 421
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	152, 488
BaeGI	GKGCMC	2 cut(s)	338, 479
BanI	GGYRCC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	2 cut(s)	425, 464
BceAI	ACGGC	1 cut(s)	110
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	293, 480
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	66, 334, 370
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 132
Bse118I	RCCGGY	2 cut(s)	143, 383
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	121, 132
BseSI	GKGCMC	2 cut(s)	338, 479
BseXI	GCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	121, 144, 384
BslI	CCNNNNNNNGG	2 cut(s)	121, 132
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	338, 479
Bsp143I	GATC	2 cut(s)	109, 493
Bsp19I	CCATGG	1 cut(s)	258
BspANI	GGCC	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	143, 383
BssAI	RCCGGY	2 cut(s)	143, 383
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	109, 493
BssT1I	CCWWGG	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	36, 246
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	112, 496
BstMBI	GATC	2 cut(s)	109, 493
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 186, 254, 380, 389
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	293, 480
BstSLI	GKGCMC	2 cut(s)	338, 479
BstV1I	GCAGC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	36, 246
Cfr10I	RCCGGY	2 cut(s)	143, 383
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	2 cut(s)	259, 436
CviJI	RGCY	9 cut(s)	5, 34, 86, 120, 125, 180, 202, 244, 351
CviKI_1	RGCY	9 cut(s)	5, 34, 86, 120, 125, 180, 202, 244, 351
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	111, 495
DpnII	GATC	2 cut(s)	109, 493
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	262, 439
FatI	CATG	2 cut(s)	258, 435
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	3 cut(s)	121, 144, 384
Hin1II	CATG	2 cut(s)	262, 439
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	3 cut(s)	121, 144, 384
HphI	GGTGA	2 cut(s)	152, 488
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	1 cut(s)	336
HpyCH4V	TGCA	4 cut(s)	23, 289, 295, 336
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 186, 254, 380, 389
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	262, 439
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	109, 493
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	7 cut(s)	20, 134, 153, 157, 258, 324, 397
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	3 cut(s)	66, 334, 370
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	2 cut(s)	41, 158
MalI	GATC	2 cut(s)	111, 495
MboI	GATC	2 cut(s)	109, 493
MboII	GAAGA	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	338, 479
MluCI	AATT	3 cut(s)	69, 342, 421
MnlI	CCTC	3 cut(s)	116, 227, 364
MseI	TTAA	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	121, 144, 384
MspR9I	CCNGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	5 cut(s)	35, 186, 254, 380, 389
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	109, 493
NlaIII	CATG	2 cut(s)	262, 439
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	350
Ple19I	CGATCG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	297
PvuI	CGATCG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	2 cut(s)	109, 493
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	338, 479
SetI	ASST	6 cut(s)	36, 108, 182, 204, 210, 501
SfaNI	GCATC	3 cut(s)	66, 334, 370
SfcI	CTRYAG	2 cut(s)	293, 480
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	69, 342, 421
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	258
TaqI	TCGA	4 cut(s)	96, 108, 168, 465
TasI	AATT	3 cut(s)	69, 342, 421
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	69, 421
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.