Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

54895457 .. 54896933

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTACCCTGTCTCGTCAAACCAATTTATGGATCTGAAGGTGCTCGAATGATGCATAAACGTGGCTATTCGGCCGTGAAACAGTTCAACATGTATAAGAATGCCCAACTGGAGTTTGTGAGGGTGTTGAGGGCAAGCATGCATCATAAGTGTTTTCCTTTTTATTATCTGACATTGGAGGCAGTTGATGCTGGTGTCCTGAAAGTTTATCAAGCAGAAGTTTTTGGGCAAGCACGTGTAATTATTGGGAGAGGATTGCAGATTGTTGGGGTAAAGATCAATATGTTCGGTTGTGTGGATGATAATGGGAGTTTGTTGATACTAATTGATAACAGGAACGGAGAAGGGAGAAAAGGAACTTATTGTGGAGATGACGATGAAGGATGTTTGTTAGAACCGCTTGACGGTAATGATACAGAATGGAGAAAAACTTCTTTTAATGGATTTAATGATAAGGGGCATTGGTTAGAAGAGACTGATGAGAGGAATGAATGGAGTATTGAAACTCATACTAGAGGTAACGTCTTATGGCGTTTTACTTTAATTATTATCATCACAAATTTGATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SQAPI

Protein Analysis

190

Amino Acids

21.71

Weight (kDa)

6.21

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	29
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	57
AcvI	CACGTG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	29, 404
AflIII	ACRYGT	2 cut(s)	90, 235
AgsI	TTSAA	2 cut(s)	88, 503
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	17, 467
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	559
Asp700I	GAANNNNTTC	2 cut(s)	83, 430
Asp718I	GGTACC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	17, 467
BfaI	CTAG	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	42, 151, 178
BpmI	CTGGAG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 404
Bse1I	ACTGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	304, 389
BseLI	CCNNNNNNNGG	2 cut(s)	29, 404
BseNI	ACTGG	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	29, 404
BsmAI	GTCTC	2 cut(s)	17, 467
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	32, 276
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	32, 276
Bst4CI	ACNGT	2 cut(s)	84, 407
Bst6I	CTCTTC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	136, 140, 231
BstF5I	GGATG	2 cut(s)	304, 389
BstKTI	GATC	2 cut(s)	35, 279
BstMAI	GTCTC	2 cut(s)	17, 467
BstMBI	GATC	2 cut(s)	32, 276
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	2 cut(s)	94, 142
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	304, 389
Cac8I	GCNNGC	3 cut(s)	136, 140, 231
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	2 cut(s)	91, 139
CviJI	RGCY	2 cut(s)	66, 74
CviKI_1	RGCY	2 cut(s)	66, 74
CviQI	GTAC	1 cut(s)	5
DpnI	GATC	2 cut(s)	34, 278
DpnII	GATC	2 cut(s)	32, 276
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
EclXI	CGGCCG	1 cut(s)	72
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	57
Eco72I	CACGTG	1 cut(s)	236
EcoT22I	ATGCAT	2 cut(s)	57, 144
FaeI	CATG	2 cut(s)	94, 142
FaiI	YATR	9 cut(s)	30, 57, 92, 96, 140, 147, 284, 510, 529
FatI	CATG	2 cut(s)	90, 138
FokI	GGATG	2 cut(s)	311, 396
FspBI	CTAG	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	94, 142
HinfI	GANTC	1 cut(s)	565
Hpy188I	TCNGA	2 cut(s)	37, 171
Hpy188III	TCNNGA	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	32, 338, 374
HpyCH4III	ACNGT	2 cut(s)	84, 407
HpyCH4IV	ACGT	3 cut(s)	61, 235, 522
HpyCH4V	TGCA	3 cut(s)	55, 142, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpySE526I	ACGT	3 cut(s)	61, 235, 522
Hsp92II	CATG	2 cut(s)	94, 142
KpnI	GGTACC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	32, 276
LpnPI	CCDG	5 cut(s)	22, 95, 177, 212, 319
LweI	GCATC	3 cut(s)	42, 151, 178
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	3 cut(s)	61, 235, 522
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	2 cut(s)	34, 278
MboI	GATC	2 cut(s)	32, 276
MboII	GAAGA	1 cut(s)	482
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	5 cut(s)	24, 240, 324, 543, 559
MnlI	CCTC	6 cut(s)	114, 123, 172, 245, 477, 509
Mph1103I	ATGCAT	2 cut(s)	57, 144
MroXI	GAANNNNTTC	2 cut(s)	83, 430
MseI	TTAA	3 cut(s)	438, 447, 542
MslI	CAYNNNNRTG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	32, 276
NlaIII	CATG	2 cut(s)	94, 142
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	2 cut(s)	57, 144
NspI	RCATGY	2 cut(s)	94, 142
PaeI	GCATGC	1 cut(s)	142
PciI	ACATGT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	83, 430
PfeI	GAWTC	1 cut(s)	565
PflMI	CCANNNNNTGG	1 cut(s)	29
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	236
PscI	ACATGT	1 cut(s)	90
PspCI	CACGTG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	438, 447, 542
Sau3AI	GATC	2 cut(s)	32, 276
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	5 cut(s)	43, 64, 238, 520, 525
SfaNI	GCATC	3 cut(s)	42, 151, 178
SmiMI	CAYNNNNRTG	1 cut(s)	60
SphI	GCATGC	1 cut(s)	142
Sse9I	AATT	5 cut(s)	24, 240, 324, 543, 559
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	84, 407
TaiI	ACGT	3 cut(s)	64, 238, 525
TaqI	TCGA	1 cut(s)	46
TasI	AATT	5 cut(s)	24, 240, 324, 543, 559
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	3 cut(s)	438, 447, 542
Tru9I	TTAA	3 cut(s)	438, 447, 542
TspDTI	ATGAA	2 cut(s)	393, 504
TspGWI	ACGGA	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	2 cut(s)	94, 142
XmnI	GAANNNNTTC	2 cut(s)	83, 430
XspI	CTAG	1 cut(s)	513
Zsp2I	ATGCAT	2 cut(s)	57, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.