Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

23865319 .. 23867611

Gene Structure 2293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTATGGCGATTCGTTCTGCACTCGCAAAGCTGGCGAGAAACTCTATTCACAAGAGCAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCTATCGACCAAAACCTCAATCGCCAAAGCCGGGCCGCTTCGGGGTTTCCTGCCGGTCATTACTTCCGTCACCGATACGATTATGGAAGCTATAAAAGCCAAAAAAAGGAGCTTAAGGTATTTGATTATTATATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCATGGAAGAGTTCAACAAGCGAAAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTATATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCAAGCAAAAGTTTCAGTAAATTTCACTGATGGCATGTTCTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGTCCTCTAGCACTATTTGATCACCTTGGGGAGGGCACGGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAAAGCGGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCTAATAACTTATGTATCAAACTATGTCGTATTGAACCTGCATATGACTTATCAAATAATGGCAAGATGCAAAGATTTGGACGTTGGGCCGTGAAAATGTACAACAAGGAAAAGAGTGGTGAACGGAAGCAAGCTGCAGTGGGAGGATTTTTTTATCTAACAATGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGATGACGAGAAGATTAAGCATCCCAATTCCAAGCTCATTTTGTTTGGCCATGTTGATGATAATGGGGGATTGTCGATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGAATCTGAAGATATTATTACAGCATACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGTTTTCATTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

335

Amino Acids

38.24

Weight (kDa)

8.57

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	625
AciI	CCGC	2 cut(s)	126, 536
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	4 cut(s)	69, 406, 546, 771
AcuI	CTGAAG	1 cut(s)	945
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	5 cut(s)	121, 132, 196, 490, 967
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	271, 614
AluBI	AGCT	5 cut(s)	34, 180, 202, 713, 832
AluI	AGCT	5 cut(s)	34, 180, 202, 713, 832
Alw21I	GWGCWC	1 cut(s)	323
Alw44I	GTGCAC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	3 cut(s)	123, 666, 844
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	333, 713, 749
ApoI	RAATTY	4 cut(s)	69, 406, 546, 771
AspS9I	GGNCC	2 cut(s)	123, 666
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	152, 473, 710
BaeGI	GKGCMC	2 cut(s)	323, 497
BaeI	ACNNNNGTAYC	2 cut(s)	577, 610
BalI	TGGCCA	1 cut(s)	846
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	345, 700, 761
BccI	CCATC	2 cut(s)	410, 449
BceAI	ACGGC	2 cut(s)	653, 945
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	714
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	625
BisI	GCNGC	4 cut(s)	126, 334, 714, 750
BlsI	GCNGC	4 cut(s)	127, 335, 715, 751
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	123, 666
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	6 cut(s)	66, 319, 355, 636, 745, 826
BpiI	GAAGAC	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	258, 484
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 132, 196, 490, 967
Bse118I	RCCGGY	2 cut(s)	143, 368
BseDI	CCNNGG	2 cut(s)	258, 484
BseGI	GGATG	1 cut(s)	817
BseLI	CCNNNNNNNGG	5 cut(s)	121, 132, 196, 490, 967
BseMII	CTCAG	1 cut(s)	527
BseSI	GKGCMC	2 cut(s)	323, 497
BseXI	GCAGC	3 cut(s)	345, 700, 761
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	125, 668, 846
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	121, 144, 369
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	5 cut(s)	121, 132, 196, 490, 967
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	3 cut(s)	125, 668, 846
Bsp1286I	GDGCHC	2 cut(s)	323, 497
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	1 cut(s)	478
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	2 cut(s)	126, 536
BspANI	GGCC	3 cut(s)	125, 668, 846
BspCNI	CTCAG	1 cut(s)	526
BspMAI	CTGCAG	1 cut(s)	718
BspMI	ACCTGC	1 cut(s)	625
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	143, 368
BsrGI	TGTACA	1 cut(s)	678
BssAI	RCCGGY	2 cut(s)	143, 368
BssECI	CCNNGG	2 cut(s)	258, 484
BssMI	GATC	1 cut(s)	478
BssT1I	CCWWGG	2 cut(s)	258, 484
Bst4CI	ACNGT	1 cut(s)	789
Bst6I	CTCTTC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	365, 755
BstAUI	TGTACA	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	36, 246, 711
BstDEI	CTNAG	2 cut(s)	80, 513
BstDSI	CCRYGG	1 cut(s)	258
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	817
BstKTI	GATC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 365, 374, 755
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	2 cut(s)	323, 497
BstV1I	GCAGC	3 cut(s)	345, 700, 761
BstV2I	GAAGAC	1 cut(s)	534
BsuRI	GGCC	3 cut(s)	125, 668, 846
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	817
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	2 cut(s)	411, 723
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	3 cut(s)	36, 246, 711
CaiI	CAGNNNCTG	1 cut(s)	758
Cfr10I	RCCGGY	2 cut(s)	143, 368
Cfr13I	GGNCC	2 cut(s)	123, 666
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	4 cut(s)	259, 421, 848, 893
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	80, 513
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	258, 484
Eco57I	CTGAAG	1 cut(s)	945
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	258, 484
ErhI	CCWWGG	2 cut(s)	258, 484
FaeI	CATG	4 cut(s)	262, 424, 851, 896
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	4 cut(s)	258, 420, 847, 892
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	4 cut(s)	126, 334, 714, 750
FokI	GGATG	1 cut(s)	804
Fsp4HI	GCNGC	4 cut(s)	126, 334, 714, 750
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	4 cut(s)	126, 334, 714, 750
HaeIII	GGCC	3 cut(s)	125, 668, 846
HapII	CCGG	3 cut(s)	121, 144, 369
Hin1II	CATG	4 cut(s)	262, 424, 851, 896
HinfI	GANTC	4 cut(s)	13, 541, 920, 971
HpaII	CCGG	3 cut(s)	121, 144, 369
HphI	GGTGA	3 cut(s)	152, 473, 710
Hpy166II	GTNNAC	2 cut(s)	321, 701
Hpy188I	TCNGA	4 cut(s)	75, 516, 552, 925
Hpy8I	GTNNAC	2 cut(s)	321, 701
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	1 cut(s)	789
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	6 cut(s)	23, 321, 620, 649, 716, 903
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 365, 374, 755
HpyF3I	CTNAG	2 cut(s)	80, 513
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	4 cut(s)	262, 424, 851, 896
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	345, 700, 761
LweI	GCATC	6 cut(s)	66, 319, 355, 636, 745, 826
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	3 cut(s)	158, 953, 962
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	5 cut(s)	275, 539, 820, 908, 938
MhlI	GDGCHC	2 cut(s)	323, 497
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	8 cut(s)	69, 327, 406, 546, 574, 771, 823, 879
MluNI	TGGCCA	1 cut(s)	846
MlyI	GAGTC	1 cut(s)	550
MnlI	CCTC	8 cut(s)	116, 227, 349, 474, 484, 716, 739, 882
Mox20I	TGGCCA	1 cut(s)	846
MscI	TGGCCA	1 cut(s)	846
MseI	TTAA	3 cut(s)	204, 573, 813
MslI	CAYNNNNRTG	1 cut(s)	852
Msp20I	TGGCCA	1 cut(s)	846
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	121, 144, 369
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	905
MwoI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 365, 374, 755
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	262, 424, 851, 896
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	424
PctI	GAATGC	1 cut(s)	905
PfeI	GAWTC	3 cut(s)	13, 920, 971
PkrI	GCNGC	4 cut(s)	127, 335, 715, 751
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
PspPI	GGNCC	2 cut(s)	123, 666
PstI	CTGCAG	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	852
SaqAI	TTAA	3 cut(s)	204, 573, 813
SatI	GCNGC	4 cut(s)	126, 334, 714, 750
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	2 cut(s)	123, 666
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	323, 497
SfaNI	GCATC	6 cut(s)	66, 319, 355, 636, 745, 826
SfcI	CTRYAG	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	8 cut(s)	69, 327, 406, 546, 574, 771, 823, 879
SsiI	CCGC	2 cut(s)	126, 536
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	258, 484
TaaI	ACNGT	1 cut(s)	789
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	3 cut(s)	96, 450, 872
TasI	AATT	8 cut(s)	69, 327, 406, 546, 574, 771, 823, 879
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	13, 920, 971
Tru1I	TTAA	3 cut(s)	204, 573, 813
Tru9I	TTAA	3 cut(s)	204, 573, 813
TscAI	CASTG	2 cut(s)	418, 723
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	333, 713, 749
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	540, 782, 909, 973
TspGWI	ACGGA	3 cut(s)	146, 512, 718
TspRI	CASTG	2 cut(s)	418, 723
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	488
XapI	RAATTY	4 cut(s)	69, 406, 546, 771
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.