Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

57521992 .. 57525502

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG439600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAAGAGTTCAACAAGCGAAAGAATGCCCAACTGCAGTTTCTTCGAACTGTGAAGGTACAAAGACAGCCATTGCATTCAAGTTACCTTTATCTTTTAACATTGGAGGCAGTTGAGGCTGGTATTGTTAAAGTGTACCAGGCAAACGTTTCGGTAAATTTCAGTGACGGCATGTTTTTGGAGTGGTTTTGCCTTGCTGTCGATGATGGGTGTCCTTTAACACTATATGACCACCTGGAGAACTTTTTTGTTTACAAGGGCGATGAAATCAGGGCAGAAGATCTCTGTTCTATATGTAACAAGCAGGGAGTTGATTCCTGTAGTTCTCGTACAATGGTGCCCTGTCTCGTCAAACCAATTTATGGATCTGAAGGTGCTCGAATGATGCATAAACGTGGCTATTCGGCCGTGAAACAGTTCAACATGTATAAGAATGCCCAACTGGAGTTTGTGAGGGTGTTGAGGGCAAGCATGCATCATAAGTGTTTTCCTTTTTATTATCTGACATTGGAGGCAGTTGATGCTGGTGTCCTGAAAGTTTATCAAGCAGAAGTTTTTGGGCAAGCACGTGTAATTATTGGGAGAGGACTGCAGATTGTTGGGGTAAAGATCAATATGTTCGGTTGTGTGGATGATAATGGGAGTTTGTTTATACTAATTGATAACAGGAACGGAGAAGGGAGAAAAGGAACTTATTGTGGAGATGACGATGAAGGATGTTTGTTAGAACCGCTTGACGGTAATGATACAGAATGGAGAAAAACTTCTTTTAATGGATTTAATGATAAGGGGCATTGGTTAGAAGAGACTGATGAGAGGAATGAATGGAGTATTGAAACTCATACTAGAGGTTACTGTCGTTACAAGTTTAGAGCTGAAGATATTATTCCATTCAAAGAAAGTTCGGAGACATGCAATTGCCTTACACCGGGAAAGATATGCGCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

316

Amino Acids

36.1

Weight (kDa)

5.73

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	1 cut(s)	731
AclI	AACGTT	1 cut(s)	147
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	2 cut(s)	390, 897
AcvI	CACGTG	1 cut(s)	569
AfaI	GTAC	3 cut(s)	60, 137, 331
AfiI	CCNNNNNNNGG	3 cut(s)	362, 737, 928
AflIII	ACRYGT	2 cut(s)	423, 568
AgsI	TTSAA	5 cut(s)	13, 81, 421, 836, 895
AjnI	CCWGG	2 cut(s)	138, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	1 cut(s)	875
AluI	AGCT	1 cut(s)	875
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	3 cut(s)	350, 800, 902
AlwI	GGATC	1 cut(s)	373
AoxI	GGCC	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	157
Asp700I	GAANNNNTTC	2 cut(s)	416, 763
AspLEI	GCGC	1 cut(s)	944
AsuC2I	CCSGG	1 cut(s)	930
AsuII	TTCGAA	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	337
BbrPI	CACGTG	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	379
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	184, 392
BcgI	CGANNNNNNTGC	4 cut(s)	26, 60, 132, 166
BciT130I	CCWGG	2 cut(s)	140, 236
BcnI	CCSGG	1 cut(s)	930
BcoDI	GTCTC	3 cut(s)	350, 800, 902
BfaI	CTAG	1 cut(s)	846
BfmI	CTRYAG	3 cut(s)	35, 319, 590
BglII	AGATCT	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	140, 236, 930
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	140, 236, 930
BmsI	GCATC	3 cut(s)	375, 484, 511
BpmI	CTGGAG	2 cut(s)	257, 464
Bpu14I	TTCGAA	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	930
BsaAI	YACGTR	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 737, 928
Bse1I	ACTGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	140, 236
BseGI	GGATG	2 cut(s)	637, 722
BseLI	CCNNNNNNNGG	3 cut(s)	362, 737, 928
BseMI	GCAATG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	342
BseX3I	CGGCCG	1 cut(s)	405
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	337
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	929
BslI	CCNNNNNNNGG	3 cut(s)	362, 737, 928
BsmAI	GTCTC	3 cut(s)	350, 800, 902
BsmI	GAATGC	3 cut(s)	31, 76, 439
BsnI	GGCC	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	342, 379
Bsp143I	GATC	3 cut(s)	280, 365, 609
BspACI	CCGC	1 cut(s)	731
BspANI	GGCC	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	2 cut(s)	39, 594
BspPI	GGATC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	447
BssMI	GATC	3 cut(s)	280, 365, 609
Bst2UI	CCWGG	2 cut(s)	140, 236
Bst4CI	ACNGT	4 cut(s)	52, 417, 740, 857
Bst6I	CTCTTC	1 cut(s)	798
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstBAI	YACGTR	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	4 cut(s)	469, 473, 564, 946
BstF5I	GGATG	2 cut(s)	637, 722
BstHHI	GCGC	1 cut(s)	944
BstKTI	GATC	3 cut(s)	283, 368, 612
BstMAI	GTCTC	3 cut(s)	350, 800, 902
BstMBI	GATC	3 cut(s)	280, 365, 609
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 521
BstNI	CCWGG	2 cut(s)	140, 236
BstNSI	RCATGY	4 cut(s)	175, 427, 475, 915
BstSCI	CCNGG	3 cut(s)	138, 234, 928
BstSFI	CTRYAG	3 cut(s)	35, 319, 590
BstSLI	GKGCMC	1 cut(s)	342
BstX2I	RGATCY	2 cut(s)	280, 365
BstYI	RGATCY	2 cut(s)	280, 365
BstZI	CGGCCG	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	407
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	637, 722
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	4 cut(s)	469, 473, 564, 946
CfoI	GCGC	1 cut(s)	944
Csp6I	GTAC	3 cut(s)	59, 136, 330
CviAII	CATG	4 cut(s)	172, 424, 472, 912
CviJI	RGCY	5 cut(s)	70, 119, 399, 407, 875
CviKI_1	RGCY	5 cut(s)	70, 119, 399, 407, 875
CviQI	GTAC	3 cut(s)	59, 136, 330
DpnI	GATC	3 cut(s)	282, 367, 611
DpnII	GATC	3 cut(s)	280, 365, 609
EaeI	YGGCCR	1 cut(s)	405
EagI	CGGCCG	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
EclXI	CGGCCG	1 cut(s)	405
Eco52I	CGGCCG	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	390, 897
Eco72I	CACGTG	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	138, 234
EcoT22I	ATGCAT	2 cut(s)	390, 477
FaeI	CATG	4 cut(s)	175, 427, 475, 915
FatI	CATG	4 cut(s)	171, 423, 471, 911
FokI	GGATG	2 cut(s)	644, 729
FspBI	CTAG	1 cut(s)	846
GlaI	GCGC	1 cut(s)	943
GsuI	CTGGAG	2 cut(s)	257, 464
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	929
HhaI	GCGC	1 cut(s)	944
Hin1II	CATG	4 cut(s)	175, 427, 475, 915
Hin6I	GCGC	1 cut(s)	942
HinP1I	GCGC	1 cut(s)	942
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	929
Hpy166II	GTNNAC	2 cut(s)	136, 253
Hpy188I	TCNGA	3 cut(s)	370, 504, 907
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	2 cut(s)	136, 253
HpyAV	CCTTC	4 cut(s)	49, 365, 671, 707
HpyCH4III	ACNGT	4 cut(s)	52, 417, 740, 857
HpyCH4IV	ACGT	3 cut(s)	147, 394, 568
HpyCH4V	TGCA	6 cut(s)	37, 76, 388, 475, 592, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 521
HpySE526I	ACGT	3 cut(s)	147, 394, 568
Hsp92II	CATG	4 cut(s)	175, 427, 475, 915
HspAI	GCGC	1 cut(s)	942
Kzo9I	GATC	3 cut(s)	280, 365, 609
LweI	GCATC	3 cut(s)	375, 484, 511
MaeI	CTAG	1 cut(s)	846
MaeII	ACGT	3 cut(s)	147, 394, 568
MaeIII	GTNAC	5 cut(s)	83, 164, 296, 851, 860
MalI	GATC	3 cut(s)	282, 367, 611
MboI	GATC	3 cut(s)	280, 365, 609
MboII	GAAGA	5 cut(s)	17, 35, 290, 815, 890
MfeI	CAATTG	1 cut(s)	916
MflI	RGATCY	2 cut(s)	280, 365
MhlI	GDGCHC	2 cut(s)	342, 379
MluCI	AATT	5 cut(s)	157, 357, 573, 657, 916
MnlI	CCTC	8 cut(s)	100, 109, 447, 456, 505, 578, 810, 842
Mph1103I	ATGCAT	2 cut(s)	390, 477
MroXI	GAANNNNTTC	2 cut(s)	416, 763
MseI	TTAA	5 cut(s)	98, 129, 218, 771, 780
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	1 cut(s)	929
MspR9I	CCNGG	3 cut(s)	140, 236, 930
MunI	CAATTG	1 cut(s)	916
Mva1269I	GAATGC	3 cut(s)	31, 76, 439
MvaI	CCWGG	2 cut(s)	140, 236
MwoI	GCNNNNNNNGC	2 cut(s)	116, 521
NciI	CCSGG	1 cut(s)	930
NdeII	GATC	3 cut(s)	280, 365, 609
NlaIII	CATG	4 cut(s)	175, 427, 475, 915
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	2 cut(s)	390, 477
NspI	RCATGY	4 cut(s)	175, 427, 475, 915
NspV	TTCGAA	1 cut(s)	46
PaeI	GCATGC	1 cut(s)	475
PciI	ACATGT	1 cut(s)	423
PctI	GAATGC	3 cut(s)	31, 76, 439
PdmI	GAANNNNTTC	2 cut(s)	416, 763
PfeI	GAWTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	362
PmaCI	CACGTG	1 cut(s)	569
PmlI	CACGTG	1 cut(s)	569
Ppu21I	YACGTR	1 cut(s)	569
PscI	ACATGT	1 cut(s)	423
Psp1406I	AACGTT	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	138, 234
PspCI	CACGTG	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	138, 234
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	2 cut(s)	39, 594
PsuI	RGATCY	2 cut(s)	280, 365
RsaI	GTAC	3 cut(s)	60, 137, 331
RsaNI	GTAC	3 cut(s)	59, 136, 330
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	5 cut(s)	98, 129, 218, 771, 780
Sau3AI	GATC	3 cut(s)	280, 365, 609
ScrFI	CCNGG	3 cut(s)	140, 236, 930
SduI	GDGCHC	2 cut(s)	342, 379
SetI	ASST	9 cut(s)	60, 90, 150, 237, 376, 397, 571, 853, 877
SfaNI	GCATC	3 cut(s)	375, 484, 511
SfcI	CTRYAG	3 cut(s)	35, 319, 590
SfuI	TTCGAA	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	393
SphI	GCATGC	1 cut(s)	475
Sse9I	AATT	5 cut(s)	157, 357, 573, 657, 916
SsiI	CCGC	1 cut(s)	731
SspMI	CTAG	1 cut(s)	846
StyD4I	CCNGG	3 cut(s)	138, 234, 928
TaaI	ACNGT	4 cut(s)	52, 417, 740, 857
TaiI	ACGT	3 cut(s)	150, 397, 571
TaqI	TCGA	3 cut(s)	46, 201, 379
TasI	AATT	5 cut(s)	157, 357, 573, 657, 916
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	5 cut(s)	98, 129, 218, 771, 780
Tru9I	TTAA	5 cut(s)	98, 129, 218, 771, 780
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	279, 726, 837
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	4 cut(s)	175, 427, 475, 915
XmnI	GAANNNNTTC	2 cut(s)	416, 763
XspI	CTAG	1 cut(s)	846
Zsp2I	ATGCAT	2 cut(s)	390, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.