Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

81628794 .. 81629793

Gene Structure 1000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGACATCAGTGATGATATAATTTATATGAACATTGGAGCAGTTGATGATGGTGTGGTGAAAACTTACCAGGCAGAAGCCTTGGTAAGCAGACTTTTTATATGTTCCAGTGAGCCCGATCAGATGGGCATCTTAATCGGACTGTTTGGCCTTATAGATGATGATGGGAGTTTGTTAAAAGTAATTGACAACCGGCATAGGAAATGGTGCAAAGAAATTACACGTGGCGAAGGTGCCAACATAGAGGTCTGCGACCACAGTCCCTTGATCCTTAGCTGCCCGCCGCTGCAGGCAGAGTCATTATATACAAGGTTAAATGATTCGCCGGAGGGAGCGAGAAATCTTCAATGCAAAGCCCCGAAGGTGAAAGATCATGTGAACAAAGCTCGCAGGGTGGTTAAGGCTTCTCACACAAACATGAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.85

Weight (kDa)

5.52

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AciI	CCGC	2 cut(s)	284, 287
AclWI	GGATC	1 cut(s)	265
AcvI	CACGTG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	3 cut(s)	279, 389, 429
AluI	AGCT	3 cut(s)	279, 389, 429
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	279, 289
AsuHPI	GGTGA	2 cut(s)	73, 379
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	120
BbrPI	CACGTG	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	266, 276
BccI	CCATC	3 cut(s)	47, 121, 161
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	74
BfaI	CTAG	1 cut(s)	430
BfmI	CTRYAG	1 cut(s)	290
BisI	GCNGC	3 cut(s)	280, 287, 290
BlsI	GCNGC	3 cut(s)	281, 288, 291
Bme1390I	CCNGG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	141
BoxI	GACNNNNGTC	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	84
BseJI	GATNNNNATC	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	266, 276
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	196, 329
BslFI	GGGAC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	121, 270, 373
BspACI	CCGC	2 cut(s)	284, 287
BspANI	GGCC	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	121, 270, 373
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	147, 263
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	284, 294, 391
BstDEI	CTNAG	1 cut(s)	275
BstKTI	GATC	3 cut(s)	124, 273, 376
BstMBI	GATC	3 cut(s)	121, 270, 373
BstNI	CCWGG	1 cut(s)	74
BstPAI	GACNNNNGTC	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	266, 276
BsuRI	GGCC	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	19, 118
Cac8I	GCNNGC	3 cut(s)	284, 294, 391
Cfr10I	RCCGGY	1 cut(s)	195
CviAII	CATG	2 cut(s)	377, 421
CviJI	RGCY	8 cut(s)	83, 118, 153, 279, 359, 389, 407, 429
CviKI_1	RGCY	8 cut(s)	83, 118, 153, 279, 359, 389, 407, 429
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	3 cut(s)	123, 272, 375
DpnII	GATC	3 cut(s)	121, 270, 373
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	120
Eco72I	CACGTG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	380, 424
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	376, 420
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	280, 287, 290
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	280, 287, 290
FspBI	CTAG	1 cut(s)	430
GluI	GCNGC	3 cut(s)	280, 287, 290
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	2 cut(s)	196, 329
Hin1II	CATG	2 cut(s)	380, 424
HinfI	GANTC	2 cut(s)	299, 323
HpaII	CCGG	2 cut(s)	196, 329
HphI	GGTGA	2 cut(s)	73, 379
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	126, 143
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	227, 358
HpyCH4III	ACNGT	2 cut(s)	147, 263
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	213, 292, 354
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	380, 424
Kzo9I	GATC	3 cut(s)	121, 270, 373
LmnI	GCTCC	2 cut(s)	41, 335
LpnPI	CCDG	7 cut(s)	59, 86, 124, 209, 278, 342, 379
Lsp1109I	GCAGC	2 cut(s)	266, 276
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	430
MaeII	ACGT	1 cut(s)	226
MalI	GATC	3 cut(s)	123, 272, 375
MboI	GATC	3 cut(s)	121, 270, 373
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	24, 186, 219
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	2 cut(s)	241, 325
MseI	TTAA	4 cut(s)	137, 179, 317, 402
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	2 cut(s)	196, 329
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
NdeII	GATC	3 cut(s)	121, 270, 373
NlaIII	CATG	2 cut(s)	380, 424
NlaIV	GGNNCC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	281, 288, 291
PleI	GAGTC	1 cut(s)	307
PmaCI	CACGTG	1 cut(s)	227
PmlI	CACGTG	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	72
PspCI	CACGTG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	4 cut(s)	137, 179, 317, 402
SatI	GCNGC	3 cut(s)	280, 287, 290
Sau3AI	GATC	3 cut(s)	121, 270, 373
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	8 cut(s)	229, 238, 252, 281, 317, 369, 391, 431
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	24, 186, 219
SsiI	CCGC	2 cut(s)	284, 287
SspMI	CTAG	1 cut(s)	430
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	147, 263
TaiI	ACGT	1 cut(s)	229
TasI	AATT	3 cut(s)	24, 186, 219
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	4 cut(s)	137, 179, 317, 402
Tru9I	TTAA	4 cut(s)	137, 179, 317, 402
TscAI	CASTG	2 cut(s)	19, 118
TseI	GCWGC	2 cut(s)	279, 289
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	19, 118
XspI	CTAG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.