Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

4847076 .. 4849254

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG046100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACTATGGCGATTCGTTCTGCACTAGCAAAGCTGGCGAATAACTCTATTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCGAGCTCAGCCATAGACAAAAACCCCAATCACCAAGACGACGCCGTTTCGGGGTTTCCTGCTGGTCATTACTTCCGTCACCGATTCGATTATGGAAGCCATGAAAGCAAAAAGAAAGAGCTTAAGGTATCTGATTATTATATGGACTTAGGAGGATTAGAGCCTGCCCGTTTCGCCATGGAAGAGTTCAACAAGCGAAAGAATGCGCAACTGCAGTTTGTGAGAGTTGTGAAGGCACATAGGCTTCTGTGCACAGGAATTAGCAGCCTATATGTTATAACATTGGAGGCAGTTGATGCCGGAATGGCTAAACTTTACCAAGCAAAAGTTTCGGTAAATTTCACTGACGGCATGTTTTTGGAATGGTTCTGTCTTGTCATTGATGATGGGTGTCCTTTAGCACTATTTGATCACCTAGAAAACTTTTTTCCTCAGAACGACCATGAAGTCAAAGCGGAGAATCAAACTCCGATGTGTAAAAAGAAGGGACTTAATTGTTCTAATAACTCATGTACCAAACTATGTCGTATCGAACCTGCATATGACTTATCAAATAATGACCAGATGCAAAGATTTGGACATTGGGCAGTGAAAATGTTCAACGAGGAAAAGAATGCTGAACTGCAGTTTGTAAGAGTGGTGAGCGGAAGCAAGCTGCTGCAGGAGGATTTCTTTTATCTAACATTGGAGGCAGCTGAGGCTGGTGTGATGAAAATTTACCAAGCAGAACTATTTTTGCCAGGTAAAAAGAAGATTAAGCATCCCAATTCCAGGCTCAATTTGTTTGGCCATGTCGTTGATAGTGGGAGACTGTCAATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGTATCTGAAGATATTATTACAGCAAACCAGCAAGGTTACTGCCGTTACAAGGATGTTGATAATTTCATACCAGCCTTCTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

346

Amino Acids

39.53

Weight (kDa)

8.26

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	86 - 141	1.8e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc16I	TGCGCA	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	735
AciI	CCGC	2 cut(s)	545, 735
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	3 cut(s)	69, 427, 804
AcuI	CTGAAG	1 cut(s)	978
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	280, 691
AjnI	CCWGG	2 cut(s)	829, 860
AluBI	AGCT	5 cut(s)	34, 96, 211, 745, 785
AluI	AGCT	5 cut(s)	34, 96, 211, 745, 785
Alw21I	GWGCWC	2 cut(s)	98, 344
Alw26I	GTCTC	1 cut(s)	892
Alw44I	GTGCAC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	877
ApaLI	GTGCAC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	354, 745, 748, 782
ApoI	RAATTY	3 cut(s)	69, 427, 804
Asp700I	GAANNNNTTC	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	298
AsuHPI	GGTGA	4 cut(s)	113, 161, 494, 742
BaeGI	GKGCMC	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	586, 619
BalI	TGGCCA	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	98, 344
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	366, 732, 735, 794
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	3 cut(s)	119, 454, 978
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	2 cut(s)	831, 862
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	892
BfaI	CTAG	2 cut(s)	26, 506
BfmI	CTRYAG	3 cut(s)	302, 713, 749
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	634
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	4 cut(s)	355, 746, 749, 783
BlpI	GCTNAGC	1 cut(s)	97
BlsI	GCNGC	4 cut(s)	356, 747, 750, 784
Bme1390I	CCNGG	2 cut(s)	831, 862
BmrFI	CCNGG	2 cut(s)	831, 862
BmsI	GCATC	4 cut(s)	66, 376, 645, 859
Bpu10I	CCTNAGC	2 cut(s)	80, 786
Bpu1102I	GCTNAGC	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
BseBI	CCWGG	2 cut(s)	831, 862
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	850, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
BseMII	CTCAG	3 cut(s)	111, 536, 777
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	4 cut(s)	366, 732, 735, 794
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	879
BsiHKAI	GWGCWC	2 cut(s)	98, 344
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
BsmAI	GTCTC	1 cut(s)	892
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	3 cut(s)	298, 709, 938
BsnI	GGCC	1 cut(s)	879
Bsp1286I	GDGCHC	2 cut(s)	98, 344
Bsp143I	GATC	1 cut(s)	499
Bsp1720I	GCTNAGC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	545, 735
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	3 cut(s)	110, 535, 778
BspMAI	CTGCAG	3 cut(s)	306, 717, 753
BspMI	ACCTGC	1 cut(s)	634
BspTI	CTTAAG	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	735
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	499
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	831, 862
Bst4CI	ACNGT	1 cut(s)	903
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	4 cut(s)	36, 94, 255, 743
BstDEI	CTNAG	5 cut(s)	80, 97, 238, 522, 786
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	850, 1009
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	1 cut(s)	892
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 98, 195, 263, 386, 395, 788
BstNI	CCWGG	2 cut(s)	831, 862
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	829, 860
BstSFI	CTRYAG	3 cut(s)	302, 713, 749
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	366, 732, 735, 794
BsuRI	GGCC	1 cut(s)	879
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	850, 1009
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	432, 684
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	4 cut(s)	36, 94, 255, 743
CfoI	GCGC	1 cut(s)	298
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	7 cut(s)	191, 268, 442, 533, 600, 881, 926
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	5 cut(s)	80, 97, 238, 522, 786
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	978
EcoICRI	GAGCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	829, 860
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	7 cut(s)	190, 267, 441, 532, 599, 880, 925
FauNDI	CATATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	355, 746, 749, 783
FokI	GGATG	2 cut(s)	837, 1016
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	4 cut(s)	355, 746, 749, 783
FspBI	CTAG	2 cut(s)	26, 506
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	4 cut(s)	355, 746, 749, 783
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	3 cut(s)	13, 174, 550
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	4 cut(s)	113, 161, 494, 742
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	5 cut(s)	75, 223, 525, 561, 958
Hpy188III	TCNNGA	1 cut(s)	1030
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	316, 568, 1036
HpyCH4III	ACNGT	1 cut(s)	903
HpyCH4V	TGCA	8 cut(s)	23, 304, 342, 629, 658, 715, 751, 936
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 98, 195, 263, 386, 395, 788
HpyF3I	CTNAG	5 cut(s)	80, 97, 238, 522, 786
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
HspAI	GCGC	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	499
Lsp1109I	GCAGC	4 cut(s)	366, 732, 735, 794
LweI	GCATC	4 cut(s)	66, 376, 645, 859
MaeI	CTAG	2 cut(s)	26, 506
MaeIII	GTNAC	3 cut(s)	167, 986, 995
MalI	GATC	1 cut(s)	501
MbiI	CCGCTC	1 cut(s)	735
MboI	GATC	1 cut(s)	499
MboII	GAAGA	4 cut(s)	284, 853, 941, 971
MhlI	GDGCHC	2 cut(s)	98, 344
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	9 cut(s)	69, 348, 427, 583, 804, 856, 868, 912, 1012
MluNI	TGGCCA	1 cut(s)	879
MnlI	CCTC	8 cut(s)	236, 370, 531, 688, 748, 772, 781, 915
Mox20I	TGGCCA	1 cut(s)	879
MroXI	GAANNNNTTC	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	3 cut(s)	213, 582, 846
Msp20I	TGGCCA	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	785
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	831, 862
Mva1269I	GAATGC	3 cut(s)	298, 709, 938
MvaI	CCWGG	2 cut(s)	831, 862
MwoI	GCNNNNNNNGC	7 cut(s)	35, 98, 195, 263, 386, 395, 788
NcoI	CCATGG	1 cut(s)	267
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
NmuCI	GTSAC	1 cut(s)	167
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	445
PctI	GAATGC	3 cut(s)	298, 709, 938
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	3 cut(s)	13, 174, 550
PkrI	GCNGC	4 cut(s)	356, 747, 750, 784
PsiI	TTATAA	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	829, 860
PspGI	CCWGG	2 cut(s)	829, 860
PstI	CTGCAG	3 cut(s)	306, 717, 753
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	213, 582, 846
SatI	GCNGC	4 cut(s)	355, 746, 749, 783
Sau3AI	GATC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	831, 862
SduI	GDGCHC	2 cut(s)	98, 344
SfaNI	GCATC	4 cut(s)	66, 376, 645, 859
SfcI	CTRYAG	3 cut(s)	302, 713, 749
SmlI	CTYRAG	2 cut(s)	212, 1030
SmoI	CTYRAG	2 cut(s)	212, 1030
Sse9I	AATT	9 cut(s)	69, 348, 427, 583, 804, 856, 868, 912, 1012
SsiI	CCGC	2 cut(s)	545, 735
SspMI	CTAG	2 cut(s)	26, 506
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	829, 860
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	903
TaqI	TCGA	2 cut(s)	177, 621
TasI	AATT	9 cut(s)	69, 348, 427, 583, 804, 856, 868, 912, 1012
TfiI	GAWTC	3 cut(s)	13, 174, 550
Tru1I	TTAA	3 cut(s)	213, 582, 846
Tru9I	TTAA	3 cut(s)	213, 582, 846
TscAI	CASTG	2 cut(s)	439, 684
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	4 cut(s)	354, 745, 748, 782
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	5 cut(s)	207, 549, 815, 942, 1006
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	439, 684
Vha464I	CTTAAG	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	340
XapI	RAATTY	3 cut(s)	69, 427, 804
XceI	RCATGY	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	2 cut(s)	26, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.