Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

8303294 .. 8305918

Gene Structure 2625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACTGCACATAGGCTTCTGTGCACAGGAATTAGCAGCCTATATGTTATAACATTGGAGGCAGTTGATGCCGGAGTGGCTAAACTTTACCAAGCAAAAGTTTCGGTAAATTTCACTGACGGCATGTTTTTGGAATGGTTCTGTCTTGTCATTGATGATGGGTGTCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTCCTCAGAACGACCATGAAGTCAGAGCGGAGAATCAAACTCCGATGTGTAAAAAGAAGGGACTTAATTGTTCTAATAACTCATGTATCAAACTATGTCATATCGAACCTGCGTATGACTTATCAAATAATGACCAGATGCAAAGATTTGGACATTGGGCAGTGAAAATGTTCAACGAGGAAAAGAATGCTGAACTGCAGTTTGTAAGAGTGGTGAGCGGAAGCAAGCTGCTGCGGGAGGATTTCTTTTATCTAACATTGCAGGCAGCTGAGGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGGTAAAAAGAAGATTACGCATCCCAATTCCCGGCTCAATTTGTTTGGCCATGTCGTTGATAGTGGGAGACTGTCAATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGTATCTGAAGATATTATTACAGCAAACCAGCAAGGTTACTGCCGTTACAAGGATGTTGATAATTTCATACCAGCCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

240

Amino Acids

27.45

Weight (kDa)

6.07

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	316
AccBSI	CCGCTC	2 cut(s)	227, 417
AciI	CCGC	3 cut(s)	227, 417, 433
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	2 cut(s)	109, 486
AcuI	CTGAAG	1 cut(s)	660
AfiI	CCNNNNNNNGG	2 cut(s)	543, 682
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	2 cut(s)	427, 467
AluI	AGCT	2 cut(s)	427, 467
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	574
Alw44I	GTGCAC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	559
ApaLI	GTGCAC	1 cut(s)	22
ApeKI	GCWGC	4 cut(s)	36, 427, 430, 464
ApoI	RAATTY	2 cut(s)	109, 486
Asp700I	GAANNNNTTC	1 cut(s)	368
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	176, 424
BaeGI	GKGCMC	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BalI	TGGCCA	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	4 cut(s)	48, 414, 417, 476
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	2 cut(s)	136, 660
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	168, 395
BfuAI	ACCTGC	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	4 cut(s)	37, 428, 431, 465
BlsI	GCNGC	4 cut(s)	38, 429, 432, 466
Bme1390I	CCNGG	2 cut(s)	513, 544
BmrFI	CCNGG	2 cut(s)	513, 544
BmsI	GCATC	3 cut(s)	58, 327, 541
Bpu10I	CCTNAGC	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	543, 682
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	532, 691
BseLI	CCNNNNNNNGG	2 cut(s)	543, 682
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	218, 459
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	4 cut(s)	48, 414, 417, 476
BshFI	GGCC	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	72, 544
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	543, 682
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	273
BsmI	GAATGC	2 cut(s)	391, 620
BsnI	GGCC	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	3 cut(s)	227, 417, 433
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	2 cut(s)	217, 460
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	316
BsrBI	CCGCTC	2 cut(s)	227, 417
BsrDI	GCAATG	1 cut(s)	455
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	504, 585
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	425, 462
BstDEI	CTNAG	2 cut(s)	204, 468
BstF5I	GGATG	2 cut(s)	532, 691
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 470
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	511, 542
BstSFI	CTRYAG	2 cut(s)	168, 395
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	4 cut(s)	48, 414, 417, 476
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	532, 691
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	114, 366
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	425, 462
CviAII	CATG	5 cut(s)	124, 215, 282, 563, 608
CviJI	RGCY	9 cut(s)	16, 39, 80, 427, 467, 473, 547, 561, 707
CviKI_1	RGCY	9 cut(s)	16, 39, 80, 427, 467, 473, 547, 561, 707
DdeI	CTNAG	2 cut(s)	204, 468
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	511
FaeI	CATG	5 cut(s)	127, 218, 285, 566, 611
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	5 cut(s)	123, 214, 281, 562, 607
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	37, 428, 431, 465
FokI	GGATG	2 cut(s)	519, 698
Fsp4HI	GCNGC	4 cut(s)	37, 428, 431, 465
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	4 cut(s)	37, 428, 431, 465
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	2 cut(s)	72, 544
Hin1II	CATG	5 cut(s)	127, 218, 285, 566, 611
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	72, 544
HphI	GGTGA	2 cut(s)	176, 424
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	207, 224, 243, 640
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	504, 585
HpyCH4V	TGCA	6 cut(s)	8, 24, 340, 397, 460, 618
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 470
HpyF3I	CTNAG	2 cut(s)	204, 468
Hsp92II	CATG	5 cut(s)	127, 218, 285, 566, 611
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	181
Lsp1109I	GCAGC	4 cut(s)	48, 414, 417, 476
LweI	GCATC	3 cut(s)	58, 327, 541
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	668, 677
MalI	GATC	1 cut(s)	183
MbiI	CCGCTC	2 cut(s)	227, 417
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	535, 623, 653
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	8 cut(s)	30, 109, 265, 486, 538, 550, 594, 694
MluNI	TGGCCA	1 cut(s)	561
MnlI	CCTC	6 cut(s)	52, 213, 370, 430, 463, 597
Mox20I	TGGCCA	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	561
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	2 cut(s)	72, 544
MspR9I	CCNGG	2 cut(s)	513, 544
Mva1269I	GAATGC	2 cut(s)	391, 620
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 470
NciI	CCSGG	1 cut(s)	544
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	5 cut(s)	127, 218, 285, 566, 611
NspI	RCATGY	1 cut(s)	127
PctI	GAATGC	2 cut(s)	391, 620
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	38, 429, 432, 466
PsiI	TTATAA	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	399
PvuII	CAGCTG	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	37, 428, 431, 465
Sau3AI	GATC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	513, 544
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	6 cut(s)	189, 310, 429, 469, 517, 670
SfaNI	GCATC	3 cut(s)	58, 327, 541
SfcI	CTRYAG	2 cut(s)	168, 395
Sse9I	AATT	8 cut(s)	30, 109, 265, 486, 538, 550, 594, 694
SsiI	CCGC	3 cut(s)	227, 417, 433
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	511, 542
TaaI	ACNGT	2 cut(s)	504, 585
TaqI	TCGA	1 cut(s)	303
TasI	AATT	8 cut(s)	30, 109, 265, 486, 538, 550, 594, 694
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	121, 366
TseI	GCWGC	4 cut(s)	36, 427, 430, 464
TspDTI	ATGAA	4 cut(s)	231, 497, 624, 688
TspRI	CASTG	2 cut(s)	121, 366
VneI	GTGCAC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	109, 486
XceI	RCATGY	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.