Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

62491506 .. 62534389

Gene Structure 42884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG441200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTATGGCGATTCGTTCTGCACTCGCAAAGCTGGCGAGTAACTCTATTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCTATCGACAAAAACCTCGATCGCCAAAGCCGGGCCGTTTCGGGGTTTCCTGCCGGTCATTACTTCCGTCACCGATTCGATTATGGAAGCTATAAAAGCAAAAAAAAGAAGCTTAAGGTATTTGATTATTATATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCATGGAAGAGTTCAACAAGCGAAAGAAAATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTTTATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCAAGCAAAAGTTTCAGTAAATTTCACTGATGGCATGTTTTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGCCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAAAGCAGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCTAATAAATTATGTATCAAACTATGTCGTATCAAACCTGCATATGACTTATCAAATAATGGCAAGATGCAACGATTTGGACGTTGGGCTGTGAAAATGTATAACAAGGAAAAGAATGCTAAACTGCAGTTTAAGAGAGTGGTGAGCGGAAGCAAGCTGTGGTGGGAGGATTCTTTTTATCTAACATTGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGATGACGATAATATTAAGCATCCCAATTCCAAGCTCATTTTGTTTGGCCATGTTGATGGTAATGGGGGATTGTCGATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGGATCTGAAGATATTATTACAGCATACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGATTTCATTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

344

Amino Acids

39.52

Weight (kDa)

9.18

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	83 - 139	3.6e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	474
AccBSI	CCGCTC	1 cut(s)	729
AciI	CCGC	1 cut(s)	729
AclWI	GGATC	1 cut(s)	955
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	4 cut(s)	69, 421, 549, 798
AcuI	CTGAAG	1 cut(s)	972
AfiI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	5 cut(s)	34, 180, 202, 739, 859
AluI	AGCT	5 cut(s)	34, 180, 202, 739, 859
Alw21I	GWGCWC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	955
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	123, 871
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	348, 776
ApoI	RAATTY	4 cut(s)	69, 421, 549, 798
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	152, 488, 736
BaeGI	GKGCMC	2 cut(s)	338, 479
BalI	TGGCCA	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	360, 788
BccI	CCATC	3 cut(s)	425, 464, 875
BceAI	ACGGC	2 cut(s)	110, 972
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	3 cut(s)	293, 480, 707
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	2 cut(s)	349, 777
BlsI	GCNGC	2 cut(s)	350, 778
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
BpiI	GAAGAC	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 132, 994
Bse118I	RCCGGY	2 cut(s)	143, 383
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	844
BseLI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BseMII	CTCAG	1 cut(s)	530
BseSI	GKGCMC	2 cut(s)	338, 479
BseXI	GCAGC	2 cut(s)	360, 788
BsgI	GTGCAG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	125, 873
BshNI	GGYRCC	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	121, 144, 384
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	3 cut(s)	121, 132, 994
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	2 cut(s)	703, 932
BsnI	GGCC	2 cut(s)	125, 873
Bsp1286I	GDGCHC	2 cut(s)	338, 479
Bsp143I	GATC	3 cut(s)	109, 493, 947
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	2 cut(s)	125, 873
BspCNI	CTCAG	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	2 cut(s)	297, 711
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	955
BspT107I	GGYRCC	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	729
BsrFI	RCCGGY	2 cut(s)	143, 383
BssAI	RCCGGY	2 cut(s)	143, 383
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	109, 493, 947
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	380, 782
BstC8I	GCNNGC	3 cut(s)	36, 246, 737
BstDEI	CTNAG	2 cut(s)	80, 516
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	844
BstKTI	GATC	3 cut(s)	112, 496, 950
BstMBI	GATC	3 cut(s)	109, 493, 947
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	3 cut(s)	293, 480, 707
BstSLI	GKGCMC	2 cut(s)	338, 479
BstV1I	GCAGC	2 cut(s)	360, 788
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	947
BstXI	CCANNNNNNTGG	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	947
BsuRI	GGCC	2 cut(s)	125, 873
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	844
BtsIMutI	CAGTG	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	36, 246, 737
CaiI	CAGNNNCTG	1 cut(s)	785
Cfr10I	RCCGGY	2 cut(s)	143, 383
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	4 cut(s)	259, 436, 875, 920
DdeI	CTNAG	2 cut(s)	80, 516
DpnI	GATC	3 cut(s)	111, 495, 949
DpnII	GATC	3 cut(s)	109, 493, 947
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	972
EcoRI	GAATTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	4 cut(s)	262, 439, 878, 923
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	4 cut(s)	258, 435, 874, 919
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	349, 777
FokI	GGATG	1 cut(s)	831
Fsp4HI	GCNGC	2 cut(s)	349, 777
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	2 cut(s)	349, 777
HaeIII	GGCC	2 cut(s)	125, 873
HapII	CCGG	3 cut(s)	121, 144, 384
Hin1II	CATG	4 cut(s)	262, 439, 878, 923
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	5 cut(s)	13, 165, 544, 752, 998
HpaII	CCGG	3 cut(s)	121, 144, 384
HphI	GGTGA	3 cut(s)	152, 488, 736
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	4 cut(s)	75, 519, 555, 952
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	8 cut(s)	23, 289, 295, 336, 623, 652, 709, 930
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
HpyF3I	CTNAG	2 cut(s)	80, 516
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	4 cut(s)	262, 439, 878, 923
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	109, 493, 947
Lsp1109I	GCAGC	2 cut(s)	360, 788
LweI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	4 cut(s)	41, 158, 980, 989
MalI	GATC	3 cut(s)	111, 495, 949
MbiI	CCGCTC	1 cut(s)	729
MboI	GATC	3 cut(s)	109, 493, 947
MboII	GAAGA	4 cut(s)	275, 542, 935, 965
MflI	RGATCY	1 cut(s)	947
MhlI	GDGCHC	2 cut(s)	338, 479
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	9 cut(s)	69, 342, 421, 549, 577, 590, 798, 850, 906
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	116, 227, 364, 742, 766, 909
Mox20I	TGGCCA	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	4 cut(s)	204, 576, 714, 840
MslI	CAYNNNNRTG	1 cut(s)	879
Msp20I	TGGCCA	1 cut(s)	873
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	121, 144, 384
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	2 cut(s)	703, 932
MwoI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 782
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	3 cut(s)	109, 493, 947
NlaIII	CATG	4 cut(s)	262, 439, 878, 923
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PctI	GAATGC	2 cut(s)	703, 932
PfeI	GAWTC	4 cut(s)	13, 165, 752, 998
PkrI	GCNGC	2 cut(s)	350, 778
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	123
PstI	CTGCAG	2 cut(s)	297, 711
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	947
PvuI	CGATCG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	879
SaqAI	TTAA	4 cut(s)	204, 576, 714, 840
SatI	GCNGC	2 cut(s)	349, 777
Sau3AI	GATC	3 cut(s)	109, 493, 947
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	338, 479
SfaNI	GCATC	6 cut(s)	66, 334, 370, 639, 772, 853
SfcI	CTRYAG	3 cut(s)	293, 480, 707
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	9 cut(s)	69, 342, 421, 549, 577, 590, 798, 850, 906
SsiI	CCGC	1 cut(s)	729
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	816
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	5 cut(s)	96, 108, 168, 465, 899
TasI	AATT	9 cut(s)	69, 342, 421, 549, 577, 590, 798, 850, 906
TfiI	GAWTC	4 cut(s)	13, 165, 752, 998
Tru1I	TTAA	4 cut(s)	204, 576, 714, 840
Tru9I	TTAA	4 cut(s)	204, 576, 714, 840
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	348, 776
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	543, 809, 936, 1000
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	4 cut(s)	69, 421, 549, 798
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.