Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003950.1

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

16 .. 4718

Gene Structure 4703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

atggctatggcgattcgttctgcactcgcaaagctggcgagtaactctgttcacaagaacagaagtggaattctgatgcttagggcttttgctatcgacaaaaacctcgatcgccaaagccgggccgtttcggggtttcctgccggtcattacttccgtcaccgattcgattatggaagctataaaagcaaaaaaaaggagcttaaggtatttgattattatatggatttaggaggattagagcctgcccgtttcgccatggaagagttcaacaagcgaaagaaaatgcaactgcagtttgtgagagttgtcaaggcacataggcatctgctgtgcacaggaattagcagcctttatgatataacattggaggcagttgatgccggtgtcgctaaactttaccaagcaaaagtttcagtaaatttcactgatggcatgtttttggaatggttctgtcttgttgtcgatgatgggtgccctatagcactatttgatcacctagaaaacttttttgctcagaaggacaatgaagacaaagcagagagtcaaattccgatgtgtaaaaagcagggacttaattgttctaataaattatgtatcaaactatgtcgtattgaacctgcatatgacttatcaaataatggcaagatgcaacgatttggacgttgggccgtgaaaatgtacaacaaggaaaagaatgctaaactgcagtttaagagagtggtgaacggaagcaagatgcagtgggaggattttgtttatctaacaatggaggcagcagatgctggtgtgatgaaaatttaccaagcagaactgtttttgccagatgacgagaagattaagcatctcaattccaagctcattctgtttggccatgttgatggtaatgggggattgtcgatactaattgataagaggcatgaagaatgcacaaaagagattttggtatctgaagatattattacagcataccagcaagcacgaagccctaaccctgaaacaaatagccaaaccctgattcaagaagctaaaaactttgaatccgaatacaaaaccttgaagcattttctgcctccacctcacaccttgaagaactcgatcccaggagtccagaaccggcagccccacctcaagaaccggctggaaaaccaccaaaccggccaccggaagctctatacaactagcagcaaatattccatcgaagaagaaaagaagaaaagaagaaaagaagaaaagaagaagaaagagaaaagaaaagaaggtccagcccaaaaggccagaagcctagaagcccagaagcccaagtccattgatgcataccccattgccacgtcagcaaacagggacccactgccacgtcagcaggggagaccaaaagccgaactgtgggggttcgcgctcactccaagcttggagcttgtagagtcctccaaacttagacatctcaaggctgtaggaatcttggatatgattcttgagcctagccaggacgtgctaactgttgagcaagctcacgctttggaagaaaatagagcagccttagaggcaaataaggcaaaaaccatcatcctaatgactcgtcatatggatgattcgctccagtacgagtatatgaatgaagaagaccccagaaggctgtgggtctcactcgaagaaagatttggcaacgtccgtgactccttgcttcctgacctagaagtgagatggcatagcctccgcttctgtgatttcaagtcagttcttgactataactcggaagcacttcgcattaaatccttcatggaattctgtagtaaagagatcacagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgatcgttgctaagaactatcgaatcgatgtaaatgcaagacggatcacaaggtttcatgagctcattggagctatgaatgtcgctgaaaagcatgacaatatccttgtgaagaactataattcaagatccgtggaaatagagcatattctggaatctaattataatcacacctctaagagagggcgccaagagcgaaaccctaatcttaggtatacttctggacattctgatccatataatcgctctacttgggaaggtgaccgccaaaataggcgaacatggaaccgaagaggtaaacatggaaagagagagggaggcaatgcctctggccatgttggtggcgccactaacactaagagccatctaaatgatttttcaaagcgcctcaatcaatggagttcgagcaaagagatgtatgttctcgatgtggagtgtctgagcattgggcacacatttgtagagctcgtgaagaacttgtcatctcccacaaagcatattgtgaagcaagagaagctcactatgtggaacaagaagatcaagaagatgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

802

Amino Acids

92.59

Weight (kDa)

9.45

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2019
Acc36I	ACCTGC	1 cut(s)	628
AccB1I	GGYRCC	3 cut(s)	474, 2040, 2198
AccI	GTMKAC	1 cut(s)	2069
AccII	CGCG	1 cut(s)	1397
AciI	CCGC	2 cut(s)	1717, 2119
AclWI	GGATC	4 cut(s)	1093, 1907, 1977, 2081
AcoI	YGGCCR	3 cut(s)	871, 1159, 2185
AcsI	RAATTY	5 cut(s)	69, 421, 549, 798, 1784
AcuI	CTGAAG	1 cut(s)	972
AcyI	GRCGYC	2 cut(s)	2041, 2199
AdeI	CACNNNGTG	1 cut(s)	2379
AfaI	GTAC	2 cut(s)	683, 1604
AfiI	CCNNNNNNNGG	4 cut(s)	121, 132, 1164, 1386
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	9 cut(s)	271, 617, 1022, 1040, 1060, 1090, 1732, 1980, 2235
AjiI	CACGTC	3 cut(s)	1332, 1358, 1492
AjnI	CCWGG	2 cut(s)	1102, 1485
AjuI	GAANNNNNNNTTGG	4 cut(s)	1002, 1034, 1644, 1676
Alw21I	GWGCWC	3 cut(s)	338, 1920, 2322
Alw26I	GTCTC	3 cut(s)	1363, 1648, 1852
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	4 cut(s)	1093, 1907, 1977, 2081
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	6 cut(s)	123, 669, 871, 1159, 1275, 2185
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	5 cut(s)	348, 776, 1120, 1185, 1535
ApoI	RAATTY	5 cut(s)	69, 421, 549, 798, 1784
Asp700I	GAANNNNTTC	1 cut(s)	1761
AspLEI	GCGC	4 cut(s)	1399, 2043, 2201, 2241
AspS9I	GGNCC	4 cut(s)	123, 669, 1262, 1345
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	152, 488, 736, 2126
AvaII	GGWCC	2 cut(s)	1262, 1345
BaeGI	GKGCMC	3 cut(s)	338, 479, 2307
BalI	TGGCCA	2 cut(s)	873, 2187
BanI	GGYRCC	3 cut(s)	474, 2040, 2198
BanII	GRGCYC	2 cut(s)	1920, 2322
BauI	CACGAG	1 cut(s)	2321
BbsI	GAAGAC	3 cut(s)	537, 1629, 1832
Bbv12I	GWGCWC	3 cut(s)	338, 1920, 2322
BbvI	GCAGC	5 cut(s)	360, 788, 1132, 1197, 1547
BccI	CCATC	7 cut(s)	425, 464, 875, 1205, 1571, 1698, 2226
BceAI	ACGGC	2 cut(s)	110, 656
BcgI	CGANNNNNNTGC	2 cut(s)	1871, 1905
BciT130I	CCWGG	2 cut(s)	1104, 1487
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	1363, 1648, 1852
BfaI	CTAG	6 cut(s)	500, 1182, 1286, 1482, 1694, 2407
BfmI	CTRYAG	5 cut(s)	293, 480, 707, 1452, 1789
BfoI	RGCGCY	3 cut(s)	2044, 2202, 2242
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	628
BglI	GCCNNNNNGGC	2 cut(s)	1274, 1544
BisI	GCNGC	5 cut(s)	349, 777, 1121, 1186, 1536
BlsI	GCNGC	5 cut(s)	350, 778, 1122, 1187, 1537
Bme1390I	CCNGG	3 cut(s)	122, 1104, 1487
Bme18I	GGWCC	2 cut(s)	1262, 1345
BmgBI	CACGTC	3 cut(s)	1332, 1358, 1492
BmgT120I	GGNCC	4 cut(s)	123, 669, 1262, 1345
BmiI	GGNNCC	6 cut(s)	476, 1346, 1347, 2042, 2141, 2200
BmrFI	CCNGG	3 cut(s)	122, 1104, 1487
BmsI	GCATC	9 cut(s)	66, 334, 370, 639, 729, 772, 853, 1303, 1798
BpiI	GAAGAC	3 cut(s)	537, 1629, 1832
BpmI	CTGGAG	1 cut(s)	1583
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	3 cut(s)	1115, 1430, 1496
BpuMI	CCSGG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	1881
BsaHI	GRCGYC	2 cut(s)	2041, 2199
BsaI	GGTCTC	2 cut(s)	1363, 1648
BsaJI	CCNNGG	3 cut(s)	258, 1102, 1986
BsaWI	WCCGGW	1 cut(s)	1164
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 132, 1164, 1386
Bse118I	RCCGGY	5 cut(s)	143, 383, 1116, 1137, 1157
Bse1I	ACTGG	1 cut(s)	1600
Bse3DI	GCAATG	2 cut(s)	1323, 2182
BseBI	CCWGG	2 cut(s)	1104, 1487
BseCI	ATCGAT	1 cut(s)	1881
BseDI	CCNNGG	3 cut(s)	258, 1102, 1986
BseGI	GGATG	2 cut(s)	1566, 1594
BseLI	CCNNNNNNNGG	4 cut(s)	121, 132, 1164, 1386
BseMI	GCAATG	2 cut(s)	1323, 2182
BseMII	CTCAG	2 cut(s)	530, 2285
BseNI	ACTGG	1 cut(s)	1600
BseSI	GKGCMC	3 cut(s)	338, 479, 2307
BseXI	GCAGC	5 cut(s)	360, 788, 1132, 1197, 1547
BsgI	GTGCAG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	1397
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	6 cut(s)	125, 671, 873, 1161, 1277, 2187
BshNI	GGYRCC	3 cut(s)	474, 2040, 2198
BshVI	ATCGAT	1 cut(s)	1881
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	3 cut(s)	338, 1920, 2322
BsiSI	CCGG	7 cut(s)	121, 144, 384, 1117, 1138, 1158, 1165
BslFI	GGGAC	2 cut(s)	585, 1358
BslI	CCNNNNNNNGG	4 cut(s)	121, 132, 1164, 1386
BsmAI	GTCTC	3 cut(s)	1363, 1648, 1852
BsmBI	CGTCTC	1 cut(s)	1852
BsmFI	GGGAC	2 cut(s)	585, 1358
BsmI	GAATGC	2 cut(s)	703, 932
BsnI	GGCC	6 cut(s)	125, 671, 873, 1161, 1277, 2187
Bso31I	GGTCTC	2 cut(s)	1363, 1648
Bsp1286I	GDGCHC	5 cut(s)	338, 479, 1920, 2307, 2322
Bsp1407I	TGTACA	1 cut(s)	681
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	2 cut(s)	1717, 2119
BspANI	GGCC	6 cut(s)	125, 671, 873, 1161, 1277, 2187
BspCNI	CTCAG	2 cut(s)	529, 2286
BspDI	ATCGAT	1 cut(s)	1881
BspFNI	CGCG	1 cut(s)	1397
BspHI	TCATGA	1 cut(s)	1912
BspLI	GGNNCC	6 cut(s)	476, 1346, 1347, 2042, 2141, 2200
BspMAI	CTGCAG	2 cut(s)	297, 711
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	4 cut(s)	1093, 1907, 1977, 2081
BspT107I	GGYRCC	3 cut(s)	474, 2040, 2198
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	2 cut(s)	1363, 1648
BsrDI	GCAATG	2 cut(s)	1323, 2182
BsrFI	RCCGGY	5 cut(s)	143, 383, 1116, 1137, 1157
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	1600
BssAI	RCCGGY	5 cut(s)	143, 383, 1116, 1137, 1157
BssECI	CCNNGG	3 cut(s)	258, 1102, 1986
BssNAI	GTATAC	1 cut(s)	2070
BssNI	GRCGYC	2 cut(s)	2041, 2199
BssSI	CACGAG	1 cut(s)	2321
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	2070
Bst2BI	CACGAG	1 cut(s)	2321
Bst2UI	CCWGG	2 cut(s)	1104, 1487
Bst4CI	ACNGT	3 cut(s)	816, 1386, 1501
Bst6I	CTCTTC	2 cut(s)	258, 2140
BstACI	GRCGYC	2 cut(s)	2041, 2199
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	3 cut(s)	380, 782, 1069
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	4 cut(s)	36, 246, 978, 1509
BstDEI	CTNAG	9 cut(s)	80, 516, 1436, 1540, 1866, 2031, 2063, 2211, 2294
BstDSI	CCRYGG	2 cut(s)	258, 1986
BstEII	GGTNACC	1 cut(s)	2114
BstF5I	GGATG	2 cut(s)	1566, 1594
BstFNI	CGCG	1 cut(s)	1397
BstH2I	RGCGCY	3 cut(s)	2044, 2202, 2242
BstHHI	GCGC	4 cut(s)	1399, 2043, 2201, 2241
BstMAI	GTCTC	3 cut(s)	1363, 1648, 1852
BstMCI	CGRYCG	1 cut(s)	112
BstNI	CCWGG	2 cut(s)	1104, 1487
BstNSI	RCATGY	1 cut(s)	439
BstPI	GGTNACC	1 cut(s)	2114
BstSCI	CCNGG	3 cut(s)	120, 1102, 1485
BstSFI	CTRYAG	5 cut(s)	293, 480, 707, 1452, 1789
BstSLI	GKGCMC	3 cut(s)	338, 479, 2307
BstUI	CGCG	1 cut(s)	1397
BstV1I	GCAGC	5 cut(s)	360, 788, 1132, 1197, 1547
BstV2I	GAAGAC	3 cut(s)	537, 1629, 1832
BstX2I	RGATCY	1 cut(s)	1982
BstXI	CCANNNNNNTGG	2 cut(s)	881, 2195
BstYI	RGATCY	1 cut(s)	1982
BstZ17I	GTATAC	1 cut(s)	2070
Bsu15I	ATCGAT	1 cut(s)	1881
BsuRI	GGCC	6 cut(s)	125, 671, 873, 1161, 1277, 2187
BsuTUI	ATCGAT	1 cut(s)	1881
BtgI	CCRYGG	2 cut(s)	258, 1986
BtgZI	GCGATG	1 cut(s)	1826
BtrI	CACGTC	3 cut(s)	1332, 1358, 1492
BtsCI	GGATG	2 cut(s)	1566, 1594
BtsI	GCAGTG	2 cut(s)	749, 1349
BtsIMutI	CAGTG	3 cut(s)	426, 749, 1349
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	4 cut(s)	36, 246, 978, 1509
CaiI	CAGNNNCTG	1 cut(s)	785
CciI	TCATGA	1 cut(s)	1912
CfoI	GCGC	4 cut(s)	1399, 2043, 2201, 2241
Cfr10I	RCCGGY	5 cut(s)	143, 383, 1116, 1137, 1157
Cfr13I	GGNCC	4 cut(s)	123, 669, 1262, 1345
ClaI	ATCGAT	1 cut(s)	1881
Csp6I	GTAC	2 cut(s)	682, 1603
CspCI	CAANNNNNGTGG	2 cut(s)	1968, 2003
CviQI	GTAC	2 cut(s)	682, 1603
DdeI	CTNAG	9 cut(s)	80, 516, 1436, 1540, 1866, 2031, 2063, 2211, 2294
DinI	GGCGCC	2 cut(s)	2042, 2200
DraIII	CACNNNGTG	1 cut(s)	2379
EaeI	YGGCCR	3 cut(s)	871, 1159, 2185
Eam1104I	CTCTTC	2 cut(s)	258, 2140
EarI	CTCTTC	2 cut(s)	258, 2140
Ecl136II	GAGCTC	2 cut(s)	1918, 2320
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	2 cut(s)	1920, 2322
Eco31I	GGTCTC	2 cut(s)	1363, 1648
Eco47I	GGWCC	2 cut(s)	1262, 1345
Eco53kI	GAGCTC	2 cut(s)	1918, 2320
Eco57I	CTGAAG	1 cut(s)	972
Eco91I	GGTNACC	1 cut(s)	2114
EcoICRI	GAGCTC	2 cut(s)	1918, 2320
EcoO109I	RGGNCCY	1 cut(s)	1345
EcoO65I	GGTNACC	1 cut(s)	2114
EcoRI	GAATTC	2 cut(s)	69, 1784
EcoRII	CCWGG	2 cut(s)	1102, 1485
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	1318
EcoT38I	GRGCYC	2 cut(s)	1920, 2322
EgeI	GGCGCC	2 cut(s)	2042, 2200
EheI	GGCGCC	2 cut(s)	2042, 2200
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	1852
FaqI	GGGAC	2 cut(s)	585, 1358
FauNDI	CATATG	2 cut(s)	625, 1584
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	2069
Fnu4HI	GCNGC	5 cut(s)	349, 777, 1121, 1186, 1536
FokI	GGATG	2 cut(s)	1553, 1601
FriOI	GRGCYC	2 cut(s)	1920, 2322
Fsp4HI	GCNGC	5 cut(s)	349, 777, 1121, 1186, 1536
FspBI	CTAG	6 cut(s)	500, 1182, 1286, 1482, 1694, 2407
GlaI	GCGC	4 cut(s)	1398, 2042, 2200, 2240
GluI	GCNGC	5 cut(s)	349, 777, 1121, 1186, 1536
GsuI	CTGGAG	1 cut(s)	1583
HaeII	RGCGCY	3 cut(s)	2044, 2202, 2242
HaeIII	GGCC	6 cut(s)	125, 671, 873, 1161, 1277, 2187
HapII	CCGG	7 cut(s)	121, 144, 384, 1117, 1138, 1158, 1165
HhaI	GCGC	4 cut(s)	1399, 2043, 2201, 2241
Hin1I	GRCGYC	2 cut(s)	2041, 2199
Hin6I	GCGC	4 cut(s)	1397, 2041, 2199, 2239
HinP1I	GCGC	4 cut(s)	1397, 2041, 2199, 2239
HindIII	AAGCTT	1 cut(s)	1408
HpaII	CCGG	7 cut(s)	121, 144, 384, 1117, 1138, 1158, 1165
HphI	GGTGA	4 cut(s)	152, 488, 736, 2126
Hpy166II	GTNNAC	5 cut(s)	52, 336, 727, 2070, 2153
Hpy188I	TCNGA	8 cut(s)	75, 519, 555, 952, 1045, 1756, 2086, 2295
Hpy8I	GTNNAC	5 cut(s)	52, 336, 727, 2070, 2153
HpyAV	CCTTC	6 cut(s)	514, 1253, 1626, 1786, 1849, 2105
HpyCH4III	ACNGT	3 cut(s)	816, 1386, 1501
HpyCH4IV	ACGT	5 cut(s)	664, 1331, 1357, 1491, 1668
HpyF3I	CTNAG	9 cut(s)	80, 516, 1436, 1540, 1866, 2031, 2063, 2211, 2294
HpySE526I	ACGT	5 cut(s)	664, 1331, 1357, 1491, 1668
Hsp92I	GRCGYC	2 cut(s)	2041, 2199
HspAI	GCGC	4 cut(s)	1397, 2041, 2199, 2239
KasI	GGCGCC	2 cut(s)	2040, 2198
KflI	GGGWCCC	1 cut(s)	1345
Ksp22I	TGATCA	1 cut(s)	493
LmnI	GCTCC	4 cut(s)	199, 1414, 1602, 1925
Lsp1109I	GCAGC	5 cut(s)	360, 788, 1132, 1197, 1547
LweI	GCATC	9 cut(s)	66, 334, 370, 639, 729, 772, 853, 1303, 1798
MaeI	CTAG	6 cut(s)	500, 1182, 1286, 1482, 1694, 2407
MaeII	ACGT	5 cut(s)	664, 1331, 1357, 1491, 1668
MaeIII	GTNAC	4 cut(s)	41, 158, 1673, 2114
MflI	RGATCY	1 cut(s)	1982
MhlI	GDGCHC	5 cut(s)	338, 479, 1920, 2307, 2322
MlsI	TGGCCA	2 cut(s)	873, 2187
MluNI	TGGCCA	2 cut(s)	873, 2187
Mly113I	GGCGCC	2 cut(s)	2041, 2199
MlyI	GAGTC	6 cut(s)	553, 1116, 1433, 1570, 1670, 1822
Mox20I	TGGCCA	2 cut(s)	873, 2187
Mph1103I	ATGCAT	1 cut(s)	1318
MroXI	GAANNNNTTC	1 cut(s)	1761
MscI	TGGCCA	2 cut(s)	873, 2187
MseI	TTAA	5 cut(s)	204, 576, 714, 840, 1770
MslI	CAYNNNNRTG	5 cut(s)	879, 1571, 1587, 2193, 2223
Msp20I	TGGCCA	2 cut(s)	873, 2187
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	7 cut(s)	121, 144, 384, 1117, 1138, 1158, 1165
MspR9I	CCNGG	3 cut(s)	122, 1104, 1487
Mva1269I	GAATGC	2 cut(s)	703, 932
MvaI	CCWGG	2 cut(s)	1104, 1487
MvnI	CGCG	1 cut(s)	1397
NarI	GGCGCC	2 cut(s)	2041, 2199
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	2 cut(s)	625, 1584
NlaIV	GGNNCC	6 cut(s)	476, 1346, 1347, 2042, 2141, 2200
NmuCI	GTSAC	3 cut(s)	158, 1673, 2114
NsiI	ATGCAT	1 cut(s)	1318
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	1 cut(s)	1912
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PctI	GAATGC	2 cut(s)	703, 932
PdmI	GAANNNNTTC	1 cut(s)	1761
PfeI	GAWTC	9 cut(s)	13, 165, 1018, 1040, 1458, 1471, 1592, 1878, 2009
PkrI	GCNGC	5 cut(s)	350, 778, 1122, 1187, 1537
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	6 cut(s)	552, 1115, 1432, 1570, 1670, 1822
PluTI	GGCGCC	2 cut(s)	2044, 2202
PpsI	GAGTC	6 cut(s)	552, 1115, 1432, 1570, 1670, 1822
PpuMI	RGGWCCY	1 cut(s)	1345
PsiI	TTATAA	1 cut(s)	2019
Psp124BI	GAGCTC	2 cut(s)	1920, 2322
Psp5II	RGGWCCY	1 cut(s)	1345
Psp6I	CCWGG	2 cut(s)	1102, 1485
PspEI	GGTNACC	1 cut(s)	2114
PspGI	CCWGG	2 cut(s)	1102, 1485
PspN4I	GGNNCC	6 cut(s)	476, 1346, 1347, 2042, 2141, 2200
PspPI	GGNCC	4 cut(s)	123, 669, 1262, 1345
PspPPI	RGGWCCY	1 cut(s)	1345
PstI	CTGCAG	2 cut(s)	297, 711
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	1982
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	683, 1604
RsaNI	GTAC	2 cut(s)	682, 1603
RseI	CAYNNNNRTG	5 cut(s)	879, 1571, 1587, 2193, 2223
SacI	GAGCTC	2 cut(s)	1920, 2322
SaqAI	TTAA	5 cut(s)	204, 576, 714, 840, 1770
SatI	GCNGC	5 cut(s)	349, 777, 1121, 1186, 1536
Sau96I	GGNCC	4 cut(s)	123, 669, 1262, 1345
SchI	GAGTC	6 cut(s)	553, 1116, 1433, 1570, 1670, 1822
ScrFI	CCNGG	3 cut(s)	122, 1104, 1487
SduI	GDGCHC	5 cut(s)	338, 479, 1920, 2307, 2322
SfaNI	GCATC	9 cut(s)	66, 334, 370, 639, 729, 772, 853, 1303, 1798
SfcI	CTRYAG	5 cut(s)	293, 480, 707, 1452, 1789
SfoI	GGCGCC	2 cut(s)	2042, 2200
SinI	GGWCC	2 cut(s)	1262, 1345
SmiMI	CAYNNNNRTG	5 cut(s)	879, 1571, 1587, 2193, 2223
SmlI	CTYRAG	4 cut(s)	203, 1130, 1445, 1475
SmoI	CTYRAG	4 cut(s)	203, 1130, 1445, 1475
SsiI	CCGC	2 cut(s)	1717, 2119
SspDI	GGCGCC	2 cut(s)	2040, 2198
SspI	AATATT	1 cut(s)	1193
SspMI	CTAG	6 cut(s)	500, 1182, 1286, 1482, 1694, 2407
SstI	GAGCTC	2 cut(s)	1920, 2322
StyD4I	CCNGG	3 cut(s)	120, 1102, 1485
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	816, 1386, 1501
TaiI	ACGT	5 cut(s)	667, 1334, 1360, 1494, 1671
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	9 cut(s)	13, 165, 1018, 1040, 1458, 1471, 1592, 1878, 2009
Tru1I	TTAA	5 cut(s)	204, 576, 714, 840, 1770
Tru9I	TTAA	5 cut(s)	204, 576, 714, 840, 1770
TscAI	CASTG	3 cut(s)	433, 749, 1356
TseFI	GTSAC	3 cut(s)	158, 1673, 2114
TseI	GCWGC	5 cut(s)	348, 776, 1120, 1185, 1535
Tsp45I	GTSAC	3 cut(s)	158, 1673, 2114
TspDTI	ATGAA	8 cut(s)	543, 809, 936, 1628, 1632, 1768, 1901, 1946
TspGWI	ACGGA	5 cut(s)	146, 744, 1661, 1912, 1975
TspRI	CASTG	3 cut(s)	433, 749, 1356
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	1262, 1345
XapI	RAATTY	5 cut(s)	69, 421, 549, 798, 1784
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	2069
XmnI	GAANNNNTTC	1 cut(s)	1761
XspI	CTAG	6 cut(s)	500, 1182, 1286, 1482, 1694, 2407
Zsp2I	ATGCAT	1 cut(s)	1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.