Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003898.1

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

31641 .. 34610

Gene Structure 2970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003898.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgtacgacacaaatagacagaaaccacaccagtacacggaggatggcaaaacacagcaaagagttctgggctggtggcgcggcaggaggacgccggaggacgaagttggcatcgggtcaggtcagggggttcgggcctggtcggcagcttgctggggagggggtttgctgttcccaaccttctattccctccgtctctttttcccgccatatcttctccaaactgtggacatggctatggcgattcgttctgcactcacaaggctggcgactaaatctattcacaagaacagaagtggaattctgatgcttagggcttttgcgagctcagccatagacaaaaaccccaatcaacaagacaacgccgtttcggggtttcctgctggtcattactttcgtcaccgattcgattatggaagccatgaaagcaaaaagaaagagcttaaggtacctgattattatatggatttaggaggattagagcctgcccgtttcgcgatggaagagtacaacaagcgaaagtttgtgagagttgtgaaggcacataggcttctgctgtgcacaggaattagcagcctatatgttataacattggaggcagttgatgccggagtggctaaactactttaccaagcaaaagtttcggaaaatttcactgacggcatgtttttggaatggttctgtcttgtcattgatgatgggtgtcctatagcactatttgatcacctagcctcttgttcaagaggactgtctcacactctcacttttctgtctttgaacagggacttgattgttctaataactcatgtatcaaaactatgtcgtattgaacctgcatatgacttatcaaataatgaccagatgcaaagatttggacattgggccgtgaaaatgttcaacgaggaaaacaatgcccagctgcgattcattagagcagtaaagggagttcgcagttgttttgattactttctaactttggaggcagtcgatgctcatgcggttagaacttggtcaaagaaaagcgcatggatccccatgaaccctttaaggtcctattatttggtcttgttgctgataacggcaatgggaatttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

365

Amino Acids

41.63

Weight (kDa)

9.23

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	841
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	2 cut(s)	81, 497
AciI	CCGC	3 cut(s)	81, 206, 998
AclWI	GGATC	2 cut(s)	1024, 1037
AcsI	RAATTY	3 cut(s)	300, 649, 1089
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	4 cut(s)	5, 35, 450, 509
AfiI	CCNNNNNNNGG	3 cut(s)	37, 226, 372
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	741, 778, 830, 898
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	4 cut(s)	149, 327, 442, 919
AluI	AGCT	4 cut(s)	149, 327, 442, 919
Alw21I	GWGCWC	2 cut(s)	329, 563
Alw26I	GTCTC	2 cut(s)	200, 756
Alw44I	GTGCAC	1 cut(s)	559
AlwI	GGATC	2 cut(s)	1024, 1037
AoxI	GGCC	2 cut(s)	135, 882
ApaLI	GTGCAC	1 cut(s)	559
ApeKI	GCWGC	3 cut(s)	146, 573, 919
ApoI	RAATTY	3 cut(s)	300, 649, 1089
Asp700I	GAANNNNTTC	1 cut(s)	893
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	81, 1025
AspS9I	GGNCC	3 cut(s)	135, 882, 1050
AsuHPI	GGTGA	2 cut(s)	392, 716
AvaII	GGWCC	1 cut(s)	1050
BaeGI	GKGCMC	1 cut(s)	563
BaeI	ACNNNNGTAYC	2 cut(s)	792, 825
BamHI	GGATCC	1 cut(s)	1029
BanI	GGYRCC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	2 cut(s)	329, 563
BbvI	GCAGC	3 cut(s)	158, 585, 906
BccI	CCATC	3 cut(s)	38, 493, 692
BceAI	ACGGC	4 cut(s)	350, 676, 869, 1095
BcgI	CGANNNNNNTGC	4 cut(s)	624, 658, 977, 1011
BciT130I	CCWGG	1 cut(s)	139
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	200, 756
BfaI	CTAG	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	841
BglI	GCCNNNNNGGC	2 cut(s)	143, 614
BisI	GCNGC	4 cut(s)	82, 147, 574, 920
BlpI	GCTNAGC	1 cut(s)	328
BlsI	GCNGC	4 cut(s)	83, 148, 575, 921
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	1050
BmgT120I	GGNCC	3 cut(s)	135, 882, 1050
BmiI	GGNNCC	2 cut(s)	450, 1031
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	5 cut(s)	120, 297, 595, 852, 979
Bpu10I	CCTNAGC	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 226, 372
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	1089
BseBI	CCWGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	3 cut(s)	37, 226, 372
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	3 cut(s)	158, 585, 906
BseYI	CCCAGC	2 cut(s)	153, 915
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	2 cut(s)	81, 497
BshFI	GGCC	2 cut(s)	137, 884
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	329, 563
BsiSI	CCGG	2 cut(s)	95, 609
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	3 cut(s)	37, 226, 372
BsmAI	GTCTC	2 cut(s)	200, 756
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	797
BsnI	GGCC	2 cut(s)	137, 884
Bsp1286I	GDGCHC	2 cut(s)	329, 563
Bsp143I	GATC	2 cut(s)	721, 1029
Bsp1720I	GCTNAGC	1 cut(s)	328
Bsp68I	TCGCGA	1 cut(s)	497
BspACI	CCGC	3 cut(s)	81, 206, 998
BspANI	GGCC	2 cut(s)	137, 884
BspCNI	CTCAG	1 cut(s)	341
BspFNI	CGCG	2 cut(s)	81, 497
BspLI	GGNNCC	2 cut(s)	450, 1031
BspMI	ACCTGC	1 cut(s)	841
BspPI	GGATC	2 cut(s)	1024, 1037
BspT107I	GGYRCC	1 cut(s)	448
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	1089
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	721, 1029
BssNI	GRCGYC	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	226, 750
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	443
BstAPI	GCANNNNNTGC	2 cut(s)	605, 989
BstC8I	GCNNGC	4 cut(s)	151, 267, 325, 486
BstDEI	CTNAG	2 cut(s)	311, 328
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	2 cut(s)	81, 497
BstHHI	GCGC	2 cut(s)	81, 1025
BstKTI	GATC	2 cut(s)	724, 1032
BstMAI	GTCTC	2 cut(s)	200, 756
BstMBI	GATC	2 cut(s)	721, 1029
BstMWI	GCNNNNNNNGC	8 cut(s)	78, 143, 329, 426, 494, 605, 614, 989
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	708
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	2 cut(s)	81, 497
BstV1I	GCAGC	3 cut(s)	158, 585, 906
BstX2I	RGATCY	1 cut(s)	1029
BstYI	RGATCY	1 cut(s)	1029
BsuRI	GGCC	2 cut(s)	137, 884
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	654
BtuMI	TCGCGA	1 cut(s)	497
BveI	ACCTGC	1 cut(s)	841
Cac8I	GCNNGC	4 cut(s)	151, 267, 325, 486
CfoI	GCGC	2 cut(s)	81, 1025
Cfr13I	GGNCC	3 cut(s)	135, 882, 1050
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	4 cut(s)	4, 34, 449, 508
CviAII	CATG	7 cut(s)	232, 422, 664, 806, 995, 1026, 1036
CviQI	GTAC	4 cut(s)	4, 34, 449, 508
DdeI	CTNAG	2 cut(s)	311, 328
DpnI	GATC	2 cut(s)	723, 1031
DpnII	GATC	2 cut(s)	721, 1029
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	1050
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	1050
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	7 cut(s)	235, 425, 667, 809, 998, 1029, 1039
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	7 cut(s)	231, 421, 663, 805, 994, 1025, 1035
FauI	CCCGC	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	838
FbaI	TGATCA	1 cut(s)	721
Fnu4HI	GCNGC	4 cut(s)	82, 147, 574, 920
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	82, 147, 574, 920
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	2 cut(s)	80, 1024
GluI	GCNGC	4 cut(s)	82, 147, 574, 920
GsaI	CCCAGC	2 cut(s)	157, 919
HaeIII	GGCC	2 cut(s)	137, 884
HapII	CCGG	2 cut(s)	95, 609
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	81, 1025
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	235, 425, 667, 809, 998, 1029, 1039
Hin6I	GCGC	2 cut(s)	79, 1023
HinP1I	GCGC	2 cut(s)	79, 1023
HinfI	GANTC	3 cut(s)	244, 405, 924
HpaII	CCGG	2 cut(s)	95, 609
HphI	GGTGA	2 cut(s)	392, 716
Hpy166II	GTNNAC	3 cut(s)	36, 229, 561
Hpy188I	TCNGA	2 cut(s)	306, 646
Hpy188III	TCNNGA	2 cut(s)	496, 741
Hpy8I	GTNNAC	3 cut(s)	36, 229, 561
HpyAV	CCTTC	2 cut(s)	190, 532
HpyCH4III	ACNGT	2 cut(s)	226, 750
HpyCH4V	TGCA	4 cut(s)	254, 561, 836, 865
HpyF10VI	GCNNNNNNNGC	8 cut(s)	78, 143, 329, 426, 494, 605, 614, 989
HpyF3I	CTNAG	2 cut(s)	311, 328
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	7 cut(s)	235, 425, 667, 809, 998, 1029, 1039
HspAI	GCGC	2 cut(s)	79, 1023
KpnI	GGTACC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	721, 1029
Lsp1109I	GCAGC	3 cut(s)	158, 585, 906
LweI	GCATC	5 cut(s)	120, 297, 595, 852, 979
MaeI	CTAG	1 cut(s)	728
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	2 cut(s)	723, 1031
MboI	GATC	2 cut(s)	721, 1029
MboII	GAAGA	2 cut(s)	206, 515
MflI	RGATCY	1 cut(s)	1029
MhlI	GDGCHC	2 cut(s)	329, 563
MluCI	AATT	4 cut(s)	300, 567, 649, 1089
MroXI	GAANNNNTTC	1 cut(s)	893
MseI	TTAA	2 cut(s)	444, 1046
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	919
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	2 cut(s)	95, 609
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	2 cut(s)	81, 497
MwoI	GCNNNNNNNGC	8 cut(s)	78, 143, 329, 426, 494, 605, 614, 989
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	2 cut(s)	721, 1029
NlaIII	CATG	7 cut(s)	235, 425, 667, 809, 998, 1029, 1039
NlaIV	GGNNCC	2 cut(s)	450, 1031
NmuCI	GTSAC	1 cut(s)	398
NruI	TCGCGA	1 cut(s)	497
NspI	RCATGY	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	3 cut(s)	244, 405, 924
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	4 cut(s)	83, 148, 575, 921
PpuMI	RGGWCCY	1 cut(s)	1050
PsiI	TTATAA	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	1050
Psp6I	CCWGG	1 cut(s)	137
PspFI	CCCAGC	2 cut(s)	153, 915
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	450, 1031
PspPI	GGNCC	3 cut(s)	135, 882, 1050
PspPPI	RGGWCCY	1 cut(s)	1050
PsrI	GAACNNNNNNTAC	2 cut(s)	930, 962
PsuI	RGATCY	1 cut(s)	1029
PvuII	CAGCTG	1 cut(s)	919
RruI	TCGCGA	1 cut(s)	497
RsaI	GTAC	4 cut(s)	5, 35, 450, 509
RsaNI	GTAC	4 cut(s)	4, 34, 449, 508
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	444, 1046
SatI	GCNGC	4 cut(s)	82, 147, 574, 920
Sau3AI	GATC	2 cut(s)	721, 1029
Sau96I	GGNCC	3 cut(s)	135, 882, 1050
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	329, 563
SfaNI	GCATC	5 cut(s)	120, 297, 595, 852, 979
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	1050
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	4 cut(s)	300, 567, 649, 1089
SsiI	CCGC	3 cut(s)	81, 206, 998
SspMI	CTAG	1 cut(s)	728
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	226, 750
TaqI	TCGA	2 cut(s)	408, 987
TasI	AATT	4 cut(s)	300, 567, 649, 1089
TatI	WGTACW	2 cut(s)	33, 507
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	3 cut(s)	244, 405, 924
Tru1I	TTAA	2 cut(s)	444, 1046
Tru9I	TTAA	2 cut(s)	444, 1046
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	146, 573, 919
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	438, 916, 1052
TspGWI	ACGGA	2 cut(s)	53, 182
TspRI	CASTG	1 cut(s)	661
Van91I	CCANNNNNTGG	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	443
VneI	GTGCAC	1 cut(s)	559
VpaK11BI	GGWCC	1 cut(s)	1050
XapI	RAATTY	3 cut(s)	300, 649, 1089
XceI	RCATGY	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.