Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

56328877 .. 56331901

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG420100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCCTCGGCTGTTCGTTCTATGTTCGGAAAAGTGGGGCCTAAATGCATTCACAAGAATAATAGTACGATTGGTAGGATGGTTATGGGCATGGCTGGGGGGAAGGTAGCTGCCAGGGACACCAACAAAAACCAGGACTGGTTTCTAAAGTTTCGTAGTGGTTATTTCTTTCGTCATCCCTTTGAGTATAGAGGCCGTGACAGCAATGAAGATTTCGACCTTAACAAAGAGAGACTTGATAAGTATTTGGATTTGGGAGGACTCGAGCCTGCCCGATTTGCCATGGAAGAGTTCAACAAGCGAAAGAATGCCCAACTGCAGTTTCTTCGAACTGTGAAGGTACAAAGACAGCCATTGCATTCAAGTTACCTTTATCTTTTAACATTGGAGGCAGTTGAGGCTGGTATTGTTAAAGTGTACCAGGCAAACGTTTCGGTAAATTTCAGTGACGGCATGTTTTTGGAGTGGTTTTGCCTTGCTGTCGATGATGGGTGTCCTTTAACACTATATGACCACCTGGAGAACTTTTTTGTTTACAAGGGCGATGAAATCAGGGCAGAAGATCTCTGTTCTATATGTAACAAGCAGGGAGTTGATTCCTGTAGTTCTCGTACAATGGTGCCCTGTCTCGTCAAACCAATTTATGGATCTGAAGGTGCTCGAATGATGCATAAACGTGGCTATTCGGCCGTGAAACAGTTCAACATGTATAAGAATGCCCAACTGGAGTTTGTGAGGGTGTTGAGGGCAAGCATGCATCATAAGTGTTTTCCTTTTTATTATCTGACATTGGAGGCAGTTGATGCTGGTGTCCTGAAAGTTTATCAAGCAGAAGTTTTTGGGCAAGCACGTGTAATTATTGGGAGAGGACTGCAGATTGTTGGGGTAAAGATCAATATGTTCGGTTGTGTGGATGATAATGGGAGTTTGTTTATACTAATTGATAACAGGAACGGAGAAGGGAGAAAAGGAACTTATTGTGGAGATGACGATGAAGGATGTTTGTTAGAACCGCTTGACGGTAATGATACAGAATGGAGAAAAACTTCTTTTAATGGATTTAATGATAAGGGGCATTGGTTAGAAGAGACTGATGAGAGGAATGAATGGAGTATTGAAACTCATACTAGAGGTTACTGTCGTTACAAGTTTAGAGCTGAAGATATTATTCCATTCAAAGAAAGTTCGGAGACATGCAATTGCCTTACACCGGGAAAGATATGCGCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

410

Amino Acids

46.85

Weight (kDa)

7.07

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	644
AciI	CCGC	1 cut(s)	1013
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	672, 1179
AcvI	CACGTG	1 cut(s)	851
AfaI	GTAC	4 cut(s)	67, 342, 419, 613
AfiI	CCNNNNNNNGG	3 cut(s)	644, 1019, 1210
AflIII	ACRYGT	2 cut(s)	705, 850
AgsI	TTSAA	5 cut(s)	295, 363, 703, 1118, 1177
AjnI	CCWGG	4 cut(s)	113, 132, 420, 516
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	2 cut(s)	110, 1157
AluI	AGCT	2 cut(s)	110, 1157
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	4 cut(s)	226, 632, 1082, 1184
AlwI	GGATC	1 cut(s)	655
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	4 cut(s)	3, 38, 193, 687
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	439
Asp700I	GAANNNNTTC	2 cut(s)	698, 1045
AspLEI	GCGC	1 cut(s)	1226
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	1212
AsuII	TTCGAA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	619
BbrPI	CACGTG	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	2 cut(s)	73, 482
BceAI	ACGGC	3 cut(s)	180, 466, 674
BcgI	CGANNNNNNTGC	4 cut(s)	308, 342, 414, 448
BciT130I	CCWGG	4 cut(s)	115, 134, 422, 518
BcnI	CCSGG	1 cut(s)	1212
BcoDI	GTCTC	4 cut(s)	226, 632, 1082, 1184
BfaI	CTAG	1 cut(s)	1128
BfmI	CTRYAG	3 cut(s)	317, 601, 872
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	5 cut(s)	115, 134, 422, 518, 1212
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	39, 621
BmrFI	CCNGG	5 cut(s)	115, 134, 422, 518, 1212
BmsI	GCATC	3 cut(s)	657, 766, 793
BpmI	CTGGAG	2 cut(s)	539, 746
Bpu14I	TTCGAA	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	1212
BsaAI	YACGTR	1 cut(s)	851
BsaJI	CCNNGG	3 cut(s)	6, 114, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	644, 1019, 1210
Bse1I	ACTGG	2 cut(s)	143, 729
Bse3DI	GCAATG	2 cut(s)	211, 353
BseBI	CCWGG	4 cut(s)	115, 134, 422, 518
BseDI	CCNNGG	3 cut(s)	6, 114, 282
BseGI	GGATG	4 cut(s)	84, 175, 919, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	644, 1019, 1210
BseMI	GCAATG	2 cut(s)	211, 353
BseNI	ACTGG	2 cut(s)	143, 729
BseSI	GKGCMC	1 cut(s)	624
BseX3I	CGGCCG	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	4 cut(s)	5, 40, 195, 689
BshNI	GGYRCC	1 cut(s)	619
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	1211
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	644, 1019, 1210
BsmAI	GTCTC	4 cut(s)	226, 632, 1082, 1184
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	4 cut(s)	48, 313, 358, 721
BsnI	GGCC	4 cut(s)	5, 40, 195, 689
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	2 cut(s)	624, 661
Bsp143I	GATC	3 cut(s)	562, 647, 891
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	1013
BspANI	GGCC	4 cut(s)	5, 40, 195, 689
BspLI	GGNNCC	2 cut(s)	39, 621
BspMAI	CTGCAG	2 cut(s)	321, 876
BspPI	GGATC	1 cut(s)	655
BspT104I	TTCGAA	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	619
BsrDI	GCAATG	2 cut(s)	211, 353
BsrI	ACTGG	2 cut(s)	143, 729
BssECI	CCNNGG	3 cut(s)	6, 114, 282
BssMI	GATC	3 cut(s)	562, 647, 891
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	4 cut(s)	115, 134, 422, 518
Bst4CI	ACNGT	4 cut(s)	334, 699, 1022, 1139
Bst6I	CTCTTC	2 cut(s)	282, 1080
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	851
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	5 cut(s)	270, 751, 755, 846, 1228
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	4 cut(s)	84, 175, 919, 1004
BstHHI	GCGC	1 cut(s)	1226
BstKTI	GATC	3 cut(s)	565, 650, 894
BstMAI	GTCTC	4 cut(s)	226, 632, 1082, 1184
BstMBI	GATC	3 cut(s)	562, 647, 891
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 278, 398, 803
BstNI	CCWGG	4 cut(s)	115, 134, 422, 518
BstNSI	RCATGY	4 cut(s)	457, 709, 757, 1197
BstSCI	CCNGG	5 cut(s)	113, 132, 420, 516, 1210
BstSFI	CTRYAG	3 cut(s)	317, 601, 872
BstSLI	GKGCMC	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	562, 647
BstYI	RGATCY	2 cut(s)	562, 647
BstZI	CGGCCG	1 cut(s)	687
BsuRI	GGCC	4 cut(s)	5, 40, 195, 689
BtgI	CCRYGG	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	4 cut(s)	84, 175, 919, 1004
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	5 cut(s)	270, 751, 755, 846, 1228
CfoI	GCGC	1 cut(s)	1226
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	4 cut(s)	66, 341, 418, 612
CviAII	CATG	6 cut(s)	91, 283, 454, 706, 754, 1194
CviQI	GTAC	4 cut(s)	66, 341, 418, 612
DpnI	GATC	3 cut(s)	564, 649, 893
DpnII	GATC	3 cut(s)	562, 647, 891
EaeI	YGGCCR	1 cut(s)	687
EagI	CGGCCG	1 cut(s)	687
Eam1104I	CTCTTC	2 cut(s)	282, 1080
EarI	CTCTTC	2 cut(s)	282, 1080
EclXI	CGGCCG	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	282
Eco52I	CGGCCG	1 cut(s)	687
Eco57I	CTGAAG	2 cut(s)	672, 1179
Eco72I	CACGTG	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	4 cut(s)	113, 132, 420, 516
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	3 cut(s)	50, 672, 759
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	6 cut(s)	94, 286, 457, 709, 757, 1197
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	6 cut(s)	90, 282, 453, 705, 753, 1193
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	4 cut(s)	91, 162, 926, 1011
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	1128
GlaI	GCGC	1 cut(s)	1225
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	2 cut(s)	539, 746
HaeIII	GGCC	4 cut(s)	5, 40, 195, 689
HapII	CCGG	1 cut(s)	1211
HhaI	GCGC	1 cut(s)	1226
Hin1II	CATG	6 cut(s)	94, 286, 457, 709, 757, 1197
Hin6I	GCGC	1 cut(s)	1224
HinP1I	GCGC	1 cut(s)	1224
HinfI	GANTC	2 cut(s)	261, 596
HpaII	CCGG	1 cut(s)	1211
Hpy166II	GTNNAC	2 cut(s)	418, 535
Hpy188I	TCNGA	4 cut(s)	29, 652, 786, 1189
Hpy188III	TCNNGA	1 cut(s)	814
Hpy8I	GTNNAC	2 cut(s)	418, 535
HpyAV	CCTTC	5 cut(s)	97, 331, 647, 953, 989
HpyCH4III	ACNGT	4 cut(s)	334, 699, 1022, 1139
HpyCH4IV	ACGT	3 cut(s)	429, 676, 850
HpyCH4V	TGCA	7 cut(s)	48, 319, 358, 670, 757, 874, 1197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 278, 398, 803
HpySE526I	ACGT	3 cut(s)	429, 676, 850
Hsp92II	CATG	6 cut(s)	94, 286, 457, 709, 757, 1197
HspAI	GCGC	1 cut(s)	1224
Kzo9I	GATC	3 cut(s)	562, 647, 891
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	3 cut(s)	657, 766, 793
MaeI	CTAG	1 cut(s)	1128
MaeII	ACGT	3 cut(s)	429, 676, 850
MaeIII	GTNAC	6 cut(s)	197, 365, 446, 578, 1133, 1142
MalI	GATC	3 cut(s)	564, 649, 893
MboI	GATC	3 cut(s)	562, 647, 891
MboII	GAAGA	6 cut(s)	221, 299, 317, 572, 1097, 1172
MfeI	CAATTG	1 cut(s)	1198
MflI	RGATCY	2 cut(s)	562, 647
MhlI	GDGCHC	2 cut(s)	624, 661
MluCI	AATT	5 cut(s)	439, 639, 855, 939, 1198
MlyI	GAGTC	1 cut(s)	255
Mph1103I	ATGCAT	3 cut(s)	50, 672, 759
MroXI	GAANNNNTTC	2 cut(s)	698, 1045
MseI	TTAA	6 cut(s)	222, 380, 411, 500, 1053, 1062
MslI	CAYNNNNRTG	1 cut(s)	675
MspI	CCGG	1 cut(s)	1211
MspR9I	CCNGG	5 cut(s)	115, 134, 422, 518, 1212
MunI	CAATTG	1 cut(s)	1198
Mva1269I	GAATGC	4 cut(s)	48, 313, 358, 721
MvaI	CCWGG	4 cut(s)	115, 134, 422, 518
MwoI	GCNNNNNNNGC	4 cut(s)	201, 278, 398, 803
NciI	CCSGG	1 cut(s)	1212
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	562, 647, 891
NlaIII	CATG	6 cut(s)	94, 286, 457, 709, 757, 1197
NlaIV	GGNNCC	2 cut(s)	39, 621
NmuCI	GTSAC	2 cut(s)	197, 446
NsiI	ATGCAT	3 cut(s)	50, 672, 759
NspI	RCATGY	4 cut(s)	457, 709, 757, 1197
NspV	TTCGAA	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	263
PciI	ACATGT	1 cut(s)	705
PctI	GAATGC	4 cut(s)	48, 313, 358, 721
PdmI	GAANNNNTTC	2 cut(s)	698, 1045
PfeI	GAWTC	1 cut(s)	596
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	255
PmaCI	CACGTG	1 cut(s)	851
PmlI	CACGTG	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	255
Ppu21I	YACGTR	1 cut(s)	851
PscI	ACATGT	1 cut(s)	705
Psp1406I	AACGTT	1 cut(s)	429
Psp6I	CCWGG	4 cut(s)	113, 132, 420, 516
PspCI	CACGTG	1 cut(s)	851
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	4 cut(s)	113, 132, 420, 516
PspN4I	GGNNCC	2 cut(s)	39, 621
PspPI	GGNCC	1 cut(s)	38
PspXI	VCTCGAGB	1 cut(s)	263
PstI	CTGCAG	2 cut(s)	321, 876
PsuI	RGATCY	2 cut(s)	562, 647
RsaI	GTAC	4 cut(s)	67, 342, 419, 613
RsaNI	GTAC	4 cut(s)	66, 341, 418, 612
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	6 cut(s)	222, 380, 411, 500, 1053, 1062
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	3 cut(s)	562, 647, 891
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	5 cut(s)	115, 134, 422, 518, 1212
SduI	GDGCHC	2 cut(s)	624, 661
SfaNI	GCATC	3 cut(s)	657, 766, 793
SfcI	CTRYAG	3 cut(s)	317, 601, 872
Sfr274I	CTCGAG	1 cut(s)	263
SfuI	TTCGAA	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	5 cut(s)	439, 639, 855, 939, 1198
SsiI	CCGC	1 cut(s)	1013
SspMI	CTAG	1 cut(s)	1128
StyD4I	CCNGG	5 cut(s)	113, 132, 420, 516, 1210
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	4 cut(s)	334, 699, 1022, 1139
TaiI	ACGT	3 cut(s)	432, 679, 853
TaqI	TCGA	5 cut(s)	216, 264, 328, 483, 661
TasI	AATT	5 cut(s)	439, 639, 855, 939, 1198
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	6 cut(s)	222, 380, 411, 500, 1053, 1062
Tru9I	TTAA	6 cut(s)	222, 380, 411, 500, 1053, 1062
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	197, 446
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	2 cut(s)	197, 446
TspDTI	ATGAA	4 cut(s)	222, 561, 1008, 1119
TspGWI	ACGGA	1 cut(s)	969
TspRI	CASTG	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	644
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	4 cut(s)	457, 709, 757, 1197
XhoI	CTCGAG	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	698, 1045
XspI	CTAG	1 cut(s)	1128
Zsp2I	ATGCAT	3 cut(s)	50, 672, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.