Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Reverse (-)

4927436 .. 4929614

Gene Structure 2179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGACTATGGCGATTCGTTCTGCACTAGCAAAGCTGGCGAATAACTCTATTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCGAGCTCAGCCATAGACAAAAACCCCAATCACCAAGACGACGCCGTTTCGGGGTTTCCTGCTGGTCATTACTTCCGTCACCGATTCGATTATGGAAGCCATGAAAGCAAAAAGAAAGAGCTTAAGGTATCTGATTATTATATGGACTTAGGAGGATTAGAGCCTGCCCGTTTCGCCATGGAAGAGTTCAACAAGCGAAAGAATGCGCAACTGCAGTTTGTGAGAGTTGTGAAGGCACATAGGCTTCTGTGCACAGGAATTAGCAGCCTATATGTTATAACATTGGAGGCAGTTGATGCCGGAATGGCTAAACTTTACCAAGCAAAAGTTTCGGTAAATTTCACTGACGGCATGTTTTTGGAATGGTTCTGTCTTGTCATTGATGATGGGTGTCCTTTAGCACTATTTGATCACCTAGAAAACTTTTTTCCTCAGAACGACCATGAAGTCAAAGCGGAGAATCAAACTCCGATGTGTAAAAAGAAGGGACTTAATTGTTCTAATAACTCATGTACCAAACTATGTCGTATCGAACCTGCATATGACTTATCAAATAATGACCAGATGCAAAGATTTGGACATTGGGCAGTGAAAATGTTCAACGAGGAAAAGAATGCTGAACTGCAGTTTGTAAGAGTGGTGAGCGGAAGCAAGCTGCTGCAGGAGGATTTCTTTTATCTAACATTGGAGGCAGCTGAGGCTGGTGTGATGAAAATTTACCAAGCAGAACTATTTTTGCCAGGTAAAAAGAAGATTAAGCATCCCAATTCCAGGCTCAATTTGTTTGGCCATGTCGTTGATAGTGGGAGACTGTCAATACTAATTGATAAGAGGCATGAAGAATGCACAAAAGAGATTTTGGTATCTGAAGATATTATTACAGCAAACCAGCAAGGTTACTGCCGTTACAAGGATGTTGATAATTTCATACCAGCCTTCTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

346

Amino Acids

39.53

Weight (kDa)

8.26

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	86 - 141	1.8e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc16I	TGCGCA	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	735
AciI	CCGC	2 cut(s)	545, 735
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	3 cut(s)	69, 427, 804
AcuI	CTGAAG	1 cut(s)	978
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	280, 691
AjnI	CCWGG	2 cut(s)	829, 860
AluBI	AGCT	5 cut(s)	34, 96, 211, 745, 785
AluI	AGCT	5 cut(s)	34, 96, 211, 745, 785
Alw21I	GWGCWC	2 cut(s)	98, 344
Alw26I	GTCTC	1 cut(s)	892
Alw44I	GTGCAC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	877
ApaLI	GTGCAC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	354, 745, 748, 782
ApoI	RAATTY	3 cut(s)	69, 427, 804
Asp700I	GAANNNNTTC	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	298
AsuHPI	GGTGA	4 cut(s)	113, 161, 494, 742
BaeGI	GKGCMC	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	586, 619
BalI	TGGCCA	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	98, 344
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	366, 732, 735, 794
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	3 cut(s)	119, 454, 978
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	2 cut(s)	831, 862
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	892
BfaI	CTAG	2 cut(s)	26, 506
BfmI	CTRYAG	3 cut(s)	302, 713, 749
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	634
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	4 cut(s)	355, 746, 749, 783
BlpI	GCTNAGC	1 cut(s)	97
BlsI	GCNGC	4 cut(s)	356, 747, 750, 784
Bme1390I	CCNGG	2 cut(s)	831, 862
BmrFI	CCNGG	2 cut(s)	831, 862
BmsI	GCATC	4 cut(s)	66, 376, 645, 859
Bpu10I	CCTNAGC	2 cut(s)	80, 786
Bpu1102I	GCTNAGC	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
BseBI	CCWGG	2 cut(s)	831, 862
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	850, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
BseMII	CTCAG	3 cut(s)	111, 536, 777
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	4 cut(s)	366, 732, 735, 794
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	879
BsiHKAI	GWGCWC	2 cut(s)	98, 344
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	3 cut(s)	141, 861, 1000
BsmAI	GTCTC	1 cut(s)	892
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	3 cut(s)	298, 709, 938
BsnI	GGCC	1 cut(s)	879
Bsp1286I	GDGCHC	2 cut(s)	98, 344
Bsp143I	GATC	1 cut(s)	499
Bsp1720I	GCTNAGC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	545, 735
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	3 cut(s)	110, 535, 778
BspMAI	CTGCAG	3 cut(s)	306, 717, 753
BspMI	ACCTGC	1 cut(s)	634
BspTI	CTTAAG	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	735
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	499
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	831, 862
Bst4CI	ACNGT	1 cut(s)	903
Bst6I	CTCTTC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	4 cut(s)	36, 94, 255, 743
BstDEI	CTNAG	5 cut(s)	80, 97, 238, 522, 786
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	850, 1009
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	1 cut(s)	892
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 98, 195, 263, 386, 395, 788
BstNI	CCWGG	2 cut(s)	831, 862
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	829, 860
BstSFI	CTRYAG	3 cut(s)	302, 713, 749
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	366, 732, 735, 794
BsuRI	GGCC	1 cut(s)	879
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	850, 1009
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	432, 684
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	4 cut(s)	36, 94, 255, 743
CfoI	GCGC	1 cut(s)	298
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	7 cut(s)	191, 268, 442, 533, 600, 881, 926
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	5 cut(s)	80, 97, 238, 522, 786
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	978
EcoICRI	GAGCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	829, 860
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	7 cut(s)	190, 267, 441, 532, 599, 880, 925
FauNDI	CATATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	355, 746, 749, 783
FokI	GGATG	2 cut(s)	837, 1016
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	4 cut(s)	355, 746, 749, 783
FspBI	CTAG	2 cut(s)	26, 506
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	4 cut(s)	355, 746, 749, 783
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	3 cut(s)	13, 174, 550
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	4 cut(s)	113, 161, 494, 742
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	5 cut(s)	75, 223, 525, 561, 958
Hpy188III	TCNNGA	1 cut(s)	1030
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	316, 568, 1036
HpyCH4III	ACNGT	1 cut(s)	903
HpyCH4V	TGCA	8 cut(s)	23, 304, 342, 629, 658, 715, 751, 936
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 98, 195, 263, 386, 395, 788
HpyF3I	CTNAG	5 cut(s)	80, 97, 238, 522, 786
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
HspAI	GCGC	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	499
Lsp1109I	GCAGC	4 cut(s)	366, 732, 735, 794
LweI	GCATC	4 cut(s)	66, 376, 645, 859
MaeI	CTAG	2 cut(s)	26, 506
MaeIII	GTNAC	3 cut(s)	167, 986, 995
MalI	GATC	1 cut(s)	501
MbiI	CCGCTC	1 cut(s)	735
MboI	GATC	1 cut(s)	499
MboII	GAAGA	4 cut(s)	284, 853, 941, 971
MhlI	GDGCHC	2 cut(s)	98, 344
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	9 cut(s)	69, 348, 427, 583, 804, 856, 868, 912, 1012
MluNI	TGGCCA	1 cut(s)	879
MnlI	CCTC	8 cut(s)	236, 370, 531, 688, 748, 772, 781, 915
Mox20I	TGGCCA	1 cut(s)	879
MroXI	GAANNNNTTC	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	3 cut(s)	213, 582, 846
Msp20I	TGGCCA	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	785
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	831, 862
Mva1269I	GAATGC	3 cut(s)	298, 709, 938
MvaI	CCWGG	2 cut(s)	831, 862
MwoI	GCNNNNNNNGC	7 cut(s)	35, 98, 195, 263, 386, 395, 788
NcoI	CCATGG	1 cut(s)	267
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	7 cut(s)	194, 271, 445, 536, 603, 884, 929
NmuCI	GTSAC	1 cut(s)	167
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	445
PctI	GAATGC	3 cut(s)	298, 709, 938
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	3 cut(s)	13, 174, 550
PkrI	GCNGC	4 cut(s)	356, 747, 750, 784
PsiI	TTATAA	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	829, 860
PspGI	CCWGG	2 cut(s)	829, 860
PstI	CTGCAG	3 cut(s)	306, 717, 753
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	213, 582, 846
SatI	GCNGC	4 cut(s)	355, 746, 749, 783
Sau3AI	GATC	1 cut(s)	499
ScrFI	CCNGG	2 cut(s)	831, 862
SduI	GDGCHC	2 cut(s)	98, 344
SfaNI	GCATC	4 cut(s)	66, 376, 645, 859
SfcI	CTRYAG	3 cut(s)	302, 713, 749
SmlI	CTYRAG	2 cut(s)	212, 1030
SmoI	CTYRAG	2 cut(s)	212, 1030
Sse9I	AATT	9 cut(s)	69, 348, 427, 583, 804, 856, 868, 912, 1012
SsiI	CCGC	2 cut(s)	545, 735
SspMI	CTAG	2 cut(s)	26, 506
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	829, 860
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	903
TaqI	TCGA	2 cut(s)	177, 621
TasI	AATT	9 cut(s)	69, 348, 427, 583, 804, 856, 868, 912, 1012
TfiI	GAWTC	3 cut(s)	13, 174, 550
Tru1I	TTAA	3 cut(s)	213, 582, 846
Tru9I	TTAA	3 cut(s)	213, 582, 846
TscAI	CASTG	2 cut(s)	439, 684
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	4 cut(s)	354, 745, 748, 782
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	5 cut(s)	207, 549, 815, 942, 1006
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	439, 684
Vha464I	CTTAAG	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	340
XapI	RAATTY	3 cut(s)	69, 427, 804
XceI	RCATGY	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	2 cut(s)	26, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.