Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

57262095 .. 57264129

Gene Structure 2035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG418700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGATTCGTTCTGCACTCGCAAAGCTGGCGAGTAACTCTATTCACAAGAACAGAAGTGGAATTCTGATGCTTAGGGCTTTTGCTATCGACAAAAACCTCGATCGCCAAAGCCGGGCCGTTTCGGGGTTTCCTGCCGGTCATTACTTCCGTCACCGATTCGATTATGGAAGCTATAAAAGCAAAAAAAAGGAGCTTAAGGTATTTGATTATTATATGGATTTAGGAGGATTAGAGCCTGCCCGTTTCGCCACGGAAGAGTTCAACAAGCGAAAGAAAATGCAACTGCAGTTTGTGAGAGTTGTCAAGGCACATAGGCATCTGCTGTGCACAGGAATTAGCAGCCTTTATGATATAACATTGGAGGCAGTTGATGCCGGTGTCGCTAAACTTTACCAAGCAAAAGTTTCAGTAAATTTCACTGATGGCATGTTTTTGGAATGGTTCTGTCTTGTTGTCGATGATGGGTGCCCTATAGCACTATTTGATCACCTAGAAAACTTTTTTGCTCAGAAGGACAATGAAGACAAGGTGGAGAGTCAAATTCCGATGTGTAAAAAGCAGGGACTTAATTGTTCTAATAACTTATGTATCAAACTATGTCGTATCAAACCTGCATATGACTTATCAAATAATGGCAAGATGCAACGATTTGGACGATGGGCTGTGAAAATGTATAACAAGGAAAAGAATGCTAAACTGCAGTTTAAGAGAGTGGTGAACGGAAGCAAGCTGTGGTGGGAGGATTCTTTTTATCTAACATTGGAGGCAGCAGATGCTGGTGTGATGAAAATTTACCAAGCAGAACTGTTTTTGCCAGATGACGATAAGATTAAGCATCCCAATTCCAAGCTCATTTTGTTTGGCCATGTTGATGATAATGGGAGATTGTCTATACTAATTGATAAGAGGAATGAAGAATGCACAAAAGAGATTTTGGTATCTGAAGATGATATTACAGCATACCAGCAAGGTTACTGCCGTTACAAGGATTCTAATGATTTCATTCCAACCTTTTTGAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

342

Amino Acids

39.53

Weight (kDa)

9.0

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	81 - 137	8e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	468
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	4 cut(s)	63, 415, 543, 792
AcuI	CTGAAG	1 cut(s)	966
AfiI	CCNNNNNNNGG	3 cut(s)	115, 126, 988
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	5 cut(s)	28, 174, 196, 733, 853
AluI	AGCT	5 cut(s)	28, 174, 196, 733, 853
Alw21I	GWGCWC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	117, 865
ApaLI	GTGCAC	1 cut(s)	328
ApeKI	GCWGC	2 cut(s)	342, 770
ApoI	RAATTY	4 cut(s)	63, 415, 543, 792
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	146, 482, 730
BaeGI	GKGCMC	2 cut(s)	332, 473
BaeI	ACNNNNGTAYC	2 cut(s)	574, 607
BalI	TGGCCA	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	354, 782
BccI	CCATC	3 cut(s)	419, 458, 654
BceAI	ACGGC	2 cut(s)	104, 966
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	3 cut(s)	287, 474, 701
BfrI	CTTAAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	343, 771
BlsI	GCNGC	2 cut(s)	344, 772
Bme1390I	CCNGG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	6 cut(s)	60, 328, 364, 633, 766, 847
BpiI	GAAGAC	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 126, 988
Bse118I	RCCGGY	2 cut(s)	137, 377
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	3 cut(s)	115, 126, 988
BseMII	CTCAG	1 cut(s)	524
BseSI	GKGCMC	2 cut(s)	332, 473
BseXI	GCAGC	2 cut(s)	354, 782
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	119, 867
BshNI	GGYRCC	1 cut(s)	468
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	332
BsiSI	CCGG	3 cut(s)	115, 138, 378
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	3 cut(s)	115, 126, 988
BsmFI	GGGAC	1 cut(s)	579
BsmI	GAATGC	2 cut(s)	697, 926
BsnI	GGCC	2 cut(s)	119, 867
Bsp1286I	GDGCHC	2 cut(s)	332, 473
Bsp143I	GATC	2 cut(s)	103, 487
BspANI	GGCC	2 cut(s)	119, 867
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	470
BspMAI	CTGCAG	2 cut(s)	291, 705
BspMI	ACCTGC	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	468
BspTI	CTTAAG	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	137, 377
BssAI	RCCGGY	2 cut(s)	137, 377
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	103, 487
Bst4CI	ACNGT	1 cut(s)	810
Bst6I	CTCTTC	1 cut(s)	252
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	2 cut(s)	374, 776
BstC8I	GCNNGC	3 cut(s)	30, 240, 731
BstDEI	CTNAG	2 cut(s)	74, 510
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	838
BstKTI	GATC	2 cut(s)	106, 490
BstMBI	GATC	2 cut(s)	103, 487
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 180, 248, 374, 383, 776
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	3 cut(s)	287, 474, 701
BstSLI	GKGCMC	2 cut(s)	332, 473
BstV1I	GCAGC	2 cut(s)	354, 782
BstV2I	GAAGAC	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	119, 867
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	838
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	30, 240, 731
CaiI	CAGNNNCTG	1 cut(s)	779
Cfr10I	RCCGGY	2 cut(s)	137, 377
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	2 cut(s)	430, 869
DdeI	CTNAG	2 cut(s)	74, 510
DpnI	GATC	2 cut(s)	105, 489
DpnII	GATC	2 cut(s)	103, 487
EaeI	YGGCCR	1 cut(s)	865
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	63
FaeI	CATG	2 cut(s)	433, 872
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	2 cut(s)	429, 868
FauNDI	CATATG	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	343, 771
FokI	GGATG	1 cut(s)	825
Fsp4HI	GCNGC	2 cut(s)	343, 771
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	2 cut(s)	343, 771
HaeIII	GGCC	2 cut(s)	119, 867
HapII	CCGG	3 cut(s)	115, 138, 378
Hin1II	CATG	2 cut(s)	433, 872
HinfI	GANTC	5 cut(s)	7, 159, 538, 746, 992
HpaII	CCGG	3 cut(s)	115, 138, 378
HphI	GGTGA	3 cut(s)	146, 482, 730
Hpy166II	GTNNAC	2 cut(s)	330, 721
Hpy188I	TCNGA	4 cut(s)	69, 513, 549, 946
Hpy8I	GTNNAC	2 cut(s)	330, 721
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	1 cut(s)	810
HpyCH4V	TGCA	8 cut(s)	17, 283, 289, 330, 617, 646, 703, 924
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 180, 248, 374, 383, 776
HpyF3I	CTNAG	2 cut(s)	74, 510
Hsp92II	CATG	2 cut(s)	433, 872
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	103, 487
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	2 cut(s)	354, 782
LweI	GCATC	6 cut(s)	60, 328, 364, 633, 766, 847
MaeI	CTAG	1 cut(s)	494
MaeIII	GTNAC	4 cut(s)	35, 152, 974, 983
MalI	GATC	2 cut(s)	105, 489
MboI	GATC	2 cut(s)	103, 487
MboII	GAAGA	4 cut(s)	269, 536, 929, 959
MhlI	GDGCHC	2 cut(s)	332, 473
MlsI	TGGCCA	1 cut(s)	867
MluCI	AATT	8 cut(s)	63, 336, 415, 543, 571, 792, 844, 900
MluNI	TGGCCA	1 cut(s)	867
MlyI	GAGTC	1 cut(s)	547
MnlI	CCTC	6 cut(s)	110, 221, 358, 736, 760, 903
Mox20I	TGGCCA	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	867
MseI	TTAA	4 cut(s)	198, 570, 708, 834
MslI	CAYNNNNRTG	1 cut(s)	873
Msp20I	TGGCCA	1 cut(s)	867
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	3 cut(s)	115, 138, 378
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	2 cut(s)	697, 926
MwoI	GCNNNNNNNGC	6 cut(s)	29, 180, 248, 374, 383, 776
NciI	CCSGG	1 cut(s)	116
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	2 cut(s)	103, 487
NlaIII	CATG	2 cut(s)	433, 872
NlaIV	GGNNCC	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PctI	GAATGC	2 cut(s)	697, 926
PfeI	GAWTC	4 cut(s)	7, 159, 746, 992
PkrI	GCNGC	2 cut(s)	344, 772
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	470
PspPI	GGNCC	1 cut(s)	117
PstI	CTGCAG	2 cut(s)	291, 705
PstNI	CAGNNNCTG	1 cut(s)	779
PvuI	CGATCG	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	4 cut(s)	198, 570, 708, 834
SatI	GCNGC	2 cut(s)	343, 771
Sau3AI	GATC	2 cut(s)	103, 487
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	332, 473
SfaNI	GCATC	6 cut(s)	60, 328, 364, 633, 766, 847
SfcI	CTRYAG	3 cut(s)	287, 474, 701
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	8 cut(s)	63, 336, 415, 543, 571, 792, 844, 900
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	810
TaqI	TCGA	4 cut(s)	90, 102, 162, 459
TasI	AATT	8 cut(s)	63, 336, 415, 543, 571, 792, 844, 900
TfiI	GAWTC	4 cut(s)	7, 159, 746, 992
Tru1I	TTAA	4 cut(s)	198, 570, 708, 834
Tru9I	TTAA	4 cut(s)	198, 570, 708, 834
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	342, 770
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	537, 803, 930, 994
TspGWI	ACGGA	3 cut(s)	140, 269, 738
TspRI	CASTG	1 cut(s)	427
Vha464I	CTTAAG	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	328
XapI	RAATTY	4 cut(s)	63, 415, 543, 792
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.