Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

33050009 .. 33052638

Gene Structure 2630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g42360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCGATGGGGAGTGATAATACATGGGTGGGGAAGAAGCCTCTGAGACGCATCGGAGGCATGTCCGATGCTCTCTCCATTGCTTCCGATCTTGGCTTCTCAGTCGCCGCTGCTCCTACTCCGGAGGAGCTTCAGAATTGGTCGAGTAGTACTGGTGAGAAAGGTGATGACTTGATAAGGGTTCTGAGGGAGCTTACCAGTGTGCAAAGGAAAATAGCAGATCTGCAAGTTGAACTTCAAGGCAGAAAAGATGATAAAAATGTATCACATTTGACGCATGTGAGCGAAATGGAAAAGAAGTGTGAAACTCTATCAAGGATTACTACAATATTAAAAGATGTCATTCAGAACAAGGATCGTATCATTGCTCGTCTCCAACAACCATATTCACTCGATTGCATTCCGGTGGAAGCAGAGTATCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCATCAGTTGCCGATTTCCAGTGGAGCCAAACATTTAAGGAGCCTCCTTCAGTATGGGGGGAAATGCTACGTCCAATTCCTGTTGCCTTAGCATCATGCACCCGGTTTTTCGAAGCAATGTCTGCTATGAGAGAGTCGTTTGCAACACTTCAACAACTCAGAGTAGGTCATTCTGATACCCCTTCACCTATCACACCAGCCAAGGATTCCAGAAGAGTACCGGGGGTTCCTGATTGTGTAACTCCACCTCCCTGGAAAACCGAACCAAGCTTTGATGACTTGGCTATCAAAAGCTCAAGAAGGCCGGATATCAAGCATCAAGAAGCAGAGAATGAAGGTGAGCTGGACAGCTCTAGCCATAGGAGATTGTCATGGCCTCCTTCAGTCAAAAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

292

Amino Acids

32.41

Weight (kDa)

6.02

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	19 - 208	4.2e-90	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	363
AcuI	CTGAAG	3 cut(s)	116, 510, 843
AfaI	GTAC	2 cut(s)	151, 696
AgsI	TTSAA	3 cut(s)	233, 239, 629
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	6 cut(s)	130, 193, 747, 771, 820, 828
AluI	AGCT	6 cut(s)	130, 193, 747, 771, 820, 828
Alw26I	GTCTC	2 cut(s)	40, 377
AlwI	GGATC	1 cut(s)	363
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	2 cut(s)	779, 851
ApeKI	GCWGC	2 cut(s)	110, 452
Asp700I	GAANNNNTTC	1 cut(s)	428
AsuC2I	CCSGG	2 cut(s)	580, 699
AsuHPI	GGTGA	4 cut(s)	167, 176, 654, 827
AsuII	TTCGAA	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	97, 439
BciT130I	CCWGG	1 cut(s)	730
BcnI	CCSGG	2 cut(s)	580, 699
BcoDI	GTCTC	2 cut(s)	40, 377
BfaI	CTAG	2 cut(s)	456, 831
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	3 cut(s)	108, 111, 453
BlsI	GCNGC	3 cut(s)	109, 112, 454
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	3 cut(s)	580, 699, 730
BmiI	GGNNCC	3 cut(s)	503, 519, 705
BmrFI	CCNGG	3 cut(s)	580, 699, 730
BmsI	GCATC	5 cut(s)	58, 60, 488, 578, 802
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu14I	TTCGAA	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	757
BpuMI	CCSGG	2 cut(s)	580, 699
BsaJI	CCNNGG	3 cut(s)	678, 698, 728
BsaWI	WCCGGW	2 cut(s)	121, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bse1I	ACTGG	3 cut(s)	157, 198, 496
Bse3DI	GCAATG	3 cut(s)	78, 363, 600
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	3 cut(s)	678, 698, 728
BseMI	GCAATG	3 cut(s)	78, 363, 600
BseMII	CTCAG	4 cut(s)	35, 114, 176, 649
BseNI	ACTGG	3 cut(s)	157, 198, 496
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	97, 439
BshFI	GGCC	2 cut(s)	781, 853
BsiSI	CCGG	5 cut(s)	122, 404, 580, 698, 782
BsmAI	GTCTC	2 cut(s)	40, 377
BsmBI	CGTCTC	2 cut(s)	40, 377
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	2 cut(s)	781, 853
Bsp119I	TTCGAA	1 cut(s)	588
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	88, 220, 355
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	781, 853
BspCNI	CTCAG	4 cut(s)	36, 113, 177, 648
BspEI	TCCGGA	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	503, 519, 705
BspPI	GGATC	1 cut(s)	363
BspT104I	TTCGAA	1 cut(s)	588
BsrDI	GCAATG	3 cut(s)	78, 363, 600
BsrI	ACTGG	3 cut(s)	157, 198, 496
BssECI	CCNNGG	3 cut(s)	678, 698, 728
BssMI	GATC	3 cut(s)	88, 220, 355
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	730
Bst6I	CTCTTC	1 cut(s)	685
BstAPI	GCANNNNNTGC	2 cut(s)	485, 599
BstBI	TTCGAA	1 cut(s)	588
BstDEI	CTNAG	5 cut(s)	44, 100, 185, 565, 635
BstKTI	GATC	3 cut(s)	91, 223, 358
BstMAI	GTCTC	2 cut(s)	40, 377
BstMBI	GATC	3 cut(s)	88, 220, 355
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 476, 485, 599
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	2 cut(s)	64, 281
BstSCI	CCNGG	3 cut(s)	578, 697, 728
BstV1I	GCAGC	2 cut(s)	97, 439
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	781, 853
BtsIMutI	CAGTG	2 cut(s)	205, 503
CseI	GACGC	2 cut(s)	57, 283
Csp6I	GTAC	2 cut(s)	150, 695
CviAII	CATG	5 cut(s)	24, 61, 278, 573, 849
CviQI	GTAC	2 cut(s)	150, 695
DdeI	CTNAG	5 cut(s)	44, 100, 185, 565, 635
DpnI	GATC	3 cut(s)	90, 222, 357
DpnII	GATC	3 cut(s)	88, 220, 355
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	678
Eco32I	GATATC	1 cut(s)	787
Eco57I	CTGAAG	3 cut(s)	116, 510, 843
EcoRII	CCWGG	1 cut(s)	728
EcoRV	GATATC	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
Esp3I	CGTCTC	2 cut(s)	40, 377
FaeI	CATG	5 cut(s)	27, 64, 281, 576, 852
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	5 cut(s)	23, 60, 277, 572, 848
Fnu4HI	GCNGC	3 cut(s)	108, 111, 453
Fsp4HI	GCNGC	3 cut(s)	108, 111, 453
FspBI	CTAG	2 cut(s)	456, 831
GluI	GCNGC	3 cut(s)	108, 111, 453
HaeIII	GGCC	2 cut(s)	781, 853
HapII	CCGG	5 cut(s)	122, 404, 580, 698, 782
HgaI	GACGC	2 cut(s)	57, 283
Hin1II	CATG	5 cut(s)	27, 64, 281, 576, 852
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	2 cut(s)	611, 683
HpaII	CCGG	5 cut(s)	122, 404, 580, 698, 782
HphI	GGTGA	4 cut(s)	167, 176, 654, 827
Hpy188III	TCNNGA	5 cut(s)	122, 687, 707, 774, 797
HpyAV	CCTTC	6 cut(s)	442, 534, 669, 771, 806, 867
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	205, 226, 399, 576, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 476, 485, 599
HpyF3I	CTNAG	5 cut(s)	44, 100, 185, 565, 635
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	5 cut(s)	27, 64, 281, 576, 852
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	88, 220, 355
LmnI	GCTCC	6 cut(s)	118, 127, 190, 467, 501, 517
Lsp1109I	GCAGC	2 cut(s)	97, 439
LweI	GCATC	5 cut(s)	58, 60, 488, 578, 802
MaeI	CTAG	2 cut(s)	456, 831
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	3 cut(s)	90, 222, 357
MboI	GATC	3 cut(s)	88, 220, 355
MboII	GAAGA	2 cut(s)	46, 702
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	4 cut(s)	136, 428, 437, 552
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	7 cut(s)	50, 51, 118, 180, 531, 735, 864
MroI	TCCGGA	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	3 cut(s)	332, 473, 513
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	5 cut(s)	122, 404, 580, 698, 782
MspR9I	CCNGG	3 cut(s)	580, 699, 730
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	4 cut(s)	57, 476, 485, 599
NciI	CCSGG	2 cut(s)	580, 699
NdeII	GATC	3 cut(s)	88, 220, 355
NlaIII	CATG	5 cut(s)	27, 64, 281, 576, 852
NlaIV	GGNNCC	3 cut(s)	503, 519, 705
NspI	RCATGY	2 cut(s)	64, 281
NspV	TTCGAA	1 cut(s)	588
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	3 cut(s)	109, 112, 454
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	3 cut(s)	503, 519, 705
PsrI	GAACNNNNNNTAC	2 cut(s)	687, 719
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	151, 696
RsaNI	GTAC	2 cut(s)	150, 695
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	332, 473, 513
SatI	GCNGC	3 cut(s)	108, 111, 453
Sau3AI	GATC	3 cut(s)	88, 220, 355
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	3 cut(s)	580, 699, 730
SfaNI	GCATC	5 cut(s)	58, 60, 488, 578, 802
SfuI	TTCGAA	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	4 cut(s)	136, 428, 437, 552
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	2 cut(s)	456, 831
StyD4I	CCNGG	3 cut(s)	578, 697, 728
StyI	CCWWGG	1 cut(s)	678
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	4 cut(s)	5, 143, 393, 588
TasI	AATT	4 cut(s)	136, 428, 437, 552
TatI	WGTACW	1 cut(s)	149
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	3 cut(s)	332, 473, 513
Tru9I	TTAA	3 cut(s)	332, 473, 513
TscAI	CASTG	2 cut(s)	205, 503
TseI	GCWGC	2 cut(s)	110, 452
TspDTI	ATGAA	2 cut(s)	461, 825
TspRI	CASTG	2 cut(s)	205, 503
XceI	RCATGY	2 cut(s)	64, 281
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	2 cut(s)	456, 831
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.