Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

2783604 .. 2785945

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCGATGGGGACTGACAGCACTTGGGTTGGGAAGAAACCGCTGCGGCGCATCGGTGGCATGTCCGACGCCCTCTCCATCGCTTCGGATCTCGGCTTCTCCGTTGCCGCTCCTCCTACTCAGGAAGAGCTTCAGAACTTGTCCAGTAGTACTGGTGAAAAGGGTGATGACTTGATAAAGGTTCTAAGGGACCTTACCTCTGTACAGAGAAAAATAACCGATCTGCAAGTTGAACTCCAAGGGAGAAAGGATGATAAAAACGTAGCACATTTGACACATGCGAGTGAAATGGAGAAGAAGTGCGAAACTTTAGCAAGGATCACTACCATTTTGAAAGATGTGATTCAAAATAAGGATCGCATCATAGCCCGTCTTCAACAACCATATTCACTCGATTGCATTCCAGTAGAAGCAGAGTATCAGAAACAGTTCTCTGAATTATTGATGAAGGCTGCTGGTGATTATGGGGCCTTGACAGCATCAGTTGCAGATTTCCAGTGGAGTCAGACATTTAAGGAGCCTCCTTCTGTTTGGGGGGAAATGCTTCGTCCAATTCCTGTGGCCTTAGCATCATGCACCCGGTTCTTTGAAGCAATGTCTGCCATGAGGGAATCATTTTCAACACTTCAGCATCTCAGAGTTGGTCATACTGATGCGTCATCACCTATAACACCAGGCAAGGATTCTTCTCGAAGAATACCAGGTGATTCCGAATGCGTAACTCCACCTCCTTGGAGAAGTGAGCCAAGCTTTGATGACTTAGCTATGAGAAGCTCAAGAAAGCCTGAAGTCGAGCATCAAGAATCAGAGGATGAAAACAGTGGGGTGGATGGAGCAAGCCACAGGAGATTGTCATGGCCTCCATCAGTTAAAAACAACGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

296

Amino Acids

32.64

Weight (kDa)

5.62

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	3 cut(s)	41, 46, 108
AclWI	GGATC	3 cut(s)	96, 326, 363
AcuI	CTGAAG	3 cut(s)	116, 611, 807
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	2 cut(s)	151, 204
AgsI	TTSAA	6 cut(s)	233, 334, 347, 377, 590, 621
AjnI	CCWGG	2 cut(s)	673, 700
AluBI	AGCT	4 cut(s)	130, 750, 764, 774
AluI	AGCT	4 cut(s)	130, 750, 764, 774
AlwI	GGATC	3 cut(s)	96, 326, 363
AoxI	GGCC	3 cut(s)	468, 561, 857
ApeKI	GCWGC	2 cut(s)	43, 452
Asp700I	GAANNNNTTC	3 cut(s)	129, 428, 543
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	190, 468
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	5 cut(s)	167, 176, 470, 654, 716
AvaII	GGWCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	30, 439
BccI	CCATC	3 cut(s)	86, 824, 871
BciT130I	CCWGG	2 cut(s)	675, 702
BcnI	CCSGG	1 cut(s)	580
BisI	GCNGC	4 cut(s)	44, 47, 108, 453
BlsI	GCNGC	4 cut(s)	45, 48, 109, 454
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	3 cut(s)	580, 675, 702
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	190, 468
BmiI	GGNNCC	3 cut(s)	191, 469, 519
BmrFI	CCNGG	3 cut(s)	580, 675, 702
BmsI	GCATC	7 cut(s)	60, 369, 488, 578, 640, 643, 805
BpiI	GAAGAC	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	565
BpuEI	CTTGAG	1 cut(s)	760
BpuMI	CCSGG	1 cut(s)	580
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	238, 731
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 284, 314, 712, 742
Bse1I	ACTGG	4 cut(s)	144, 157, 404, 496
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	675, 702
BseDI	CCNNGG	2 cut(s)	238, 731
BseGI	GGATG	3 cut(s)	256, 817, 835
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	134, 649
BseNI	ACTGG	4 cut(s)	144, 157, 404, 496
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	30, 439
BshFI	GGCC	3 cut(s)	470, 563, 859
BsiSI	CCGG	1 cut(s)	580
BslFI	GGGAC	2 cut(s)	25, 203
BsmFI	GGGAC	2 cut(s)	25, 203
BsmI	GAATGC	2 cut(s)	399, 719
BsnI	GGCC	3 cut(s)	470, 563, 859
Bsp1407I	TGTACA	1 cut(s)	202
Bsp143I	GATC	4 cut(s)	88, 220, 318, 355
BspACI	CCGC	3 cut(s)	41, 46, 108
BspANI	GGCC	3 cut(s)	470, 563, 859
BspCNI	CTCAG	2 cut(s)	133, 648
BspLI	GGNNCC	3 cut(s)	191, 469, 519
BspPI	GGATC	3 cut(s)	96, 326, 363
BspQI	GCTCTTC	1 cut(s)	120
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	202
BsrI	ACTGG	4 cut(s)	144, 157, 404, 496
BssECI	CCNNGG	2 cut(s)	238, 731
BssMI	GATC	4 cut(s)	88, 220, 318, 355
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	2 cut(s)	238, 731
Bst2UI	CCWGG	2 cut(s)	675, 702
Bst4CI	ACNGT	3 cut(s)	429, 821, 881
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	2 cut(s)	485, 599
BstAUI	TGTACA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	5 cut(s)	120, 185, 565, 635, 760
BstF5I	GGATG	3 cut(s)	256, 817, 835
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	91, 223, 321, 358
BstMBI	GATC	4 cut(s)	88, 220, 318, 355
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 476, 485, 599
BstNI	CCWGG	2 cut(s)	675, 702
BstNSI	RCATGY	2 cut(s)	64, 281
BstSCI	CCNGG	3 cut(s)	578, 673, 700
BstV1I	GCAGC	2 cut(s)	30, 439
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	470, 563, 859
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	256, 817, 835
BtsIMutI	CAGTG	2 cut(s)	503, 826
Cac8I	GCNNGC	1 cut(s)	838
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	190, 468
CseI	GACGC	2 cut(s)	77, 645
CsiI	ACCWGGT	1 cut(s)	700
Csp6I	GTAC	2 cut(s)	150, 203
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	5 cut(s)	61, 278, 573, 604, 855
CviQI	GTAC	2 cut(s)	150, 203
DdeI	CTNAG	5 cut(s)	120, 185, 565, 635, 760
DpnI	GATC	4 cut(s)	90, 222, 320, 357
DpnII	GATC	4 cut(s)	88, 220, 318, 355
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	238, 731
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	116, 611, 807
EcoO109I	RGGNCCY	2 cut(s)	190, 468
EcoRII	CCWGG	2 cut(s)	673, 700
EcoT14I	CCWWGG	2 cut(s)	238, 731
ErhI	CCWWGG	2 cut(s)	238, 731
FaeI	CATG	5 cut(s)	64, 281, 576, 607, 858
FaqI	GGGAC	2 cut(s)	25, 203
FatI	CATG	5 cut(s)	60, 277, 572, 603, 854
Fnu4HI	GCNGC	4 cut(s)	44, 47, 108, 453
FokI	GGATG	3 cut(s)	263, 824, 842
Fsp4HI	GCNGC	4 cut(s)	44, 47, 108, 453
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	4 cut(s)	44, 47, 108, 453
HaeIII	GGCC	3 cut(s)	470, 563, 859
HapII	CCGG	1 cut(s)	580
HgaI	GACGC	2 cut(s)	77, 645
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	64, 281, 576, 607, 858
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	6 cut(s)	343, 502, 611, 683, 707, 803
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	5 cut(s)	167, 176, 470, 654, 716
Hpy188I	TCNGA	9 cut(s)	67, 88, 135, 423, 436, 507, 638, 712, 808
Hpy188III	TCNNGA	4 cut(s)	122, 690, 777, 800
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	442, 534
HpyCH4III	ACNGT	3 cut(s)	429, 821, 881
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	226, 399, 488, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 476, 485, 599
HpyF3I	CTNAG	5 cut(s)	120, 185, 565, 635, 760
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	64, 281, 576, 607, 858
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	88, 220, 318, 355
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	3 cut(s)	115, 517, 833
Lsp1109I	GCAGC	2 cut(s)	30, 439
LweI	GCATC	7 cut(s)	60, 369, 488, 578, 640, 643, 805
MabI	ACCWGGT	1 cut(s)	700
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	4 cut(s)	90, 222, 320, 357
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	4 cut(s)	88, 220, 318, 355
MboII	GAAGA	6 cut(s)	46, 137, 307, 365, 678, 705
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	2 cut(s)	437, 552
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	83, 123, 208, 531, 600, 738, 802, 870
MroXI	GAANNNNTTC	3 cut(s)	129, 428, 543
MseI	TTAA	2 cut(s)	513, 870
MslI	CAYNNNNRTG	2 cut(s)	282, 651
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	580
MspR9I	CCNGG	3 cut(s)	580, 675, 702
Mva1269I	GAATGC	2 cut(s)	399, 719
MvaI	CCWGG	2 cut(s)	675, 702
MwoI	GCNNNNNNNGC	4 cut(s)	57, 476, 485, 599
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	4 cut(s)	88, 220, 318, 355
NlaIII	CATG	5 cut(s)	64, 281, 576, 607, 858
NlaIV	GGNNCC	3 cut(s)	191, 469, 519
NmeAIII	GCCGAG	1 cut(s)	72
NspI	RCATGY	2 cut(s)	64, 281
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	2 cut(s)	399, 719
PdmI	GAANNNNTTC	3 cut(s)	129, 428, 543
PfeI	GAWTC	5 cut(s)	343, 611, 683, 707, 803
PkrI	GCNGC	4 cut(s)	45, 48, 109, 454
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	673, 700
PspGI	CCWGG	2 cut(s)	673, 700
PspN4I	GGNNCC	3 cut(s)	191, 469, 519
PspPI	GGNCC	2 cut(s)	190, 468
PspPPI	RGGWCCY	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	151, 204
RsaNI	GTAC	2 cut(s)	150, 203
RseI	CAYNNNNRTG	2 cut(s)	282, 651
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	513, 870
SatI	GCNGC	4 cut(s)	44, 47, 108, 453
Sau3AI	GATC	4 cut(s)	88, 220, 318, 355
Sau96I	GGNCC	2 cut(s)	190, 468
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	3 cut(s)	580, 675, 702
SexAI	ACCWGGT	1 cut(s)	700
SfaNI	GCATC	7 cut(s)	60, 369, 488, 578, 640, 643, 805
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	2 cut(s)	282, 651
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	2 cut(s)	437, 552
SsiI	CCGC	3 cut(s)	41, 46, 108
StyD4I	CCNGG	3 cut(s)	578, 673, 700
StyI	CCWWGG	2 cut(s)	238, 731
TaaI	ACNGT	3 cut(s)	429, 821, 881
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	5, 393, 691, 792
TasI	AATT	2 cut(s)	437, 552
TatI	WGTACW	2 cut(s)	149, 202
TauI	GCSGC	2 cut(s)	49, 110
TfiI	GAWTC	5 cut(s)	343, 611, 683, 707, 803
Tru1I	TTAA	2 cut(s)	513, 870
Tru9I	TTAA	2 cut(s)	513, 870
TscAI	CASTG	2 cut(s)	503, 826
TseI	GCWGC	2 cut(s)	43, 452
TspDTI	ATGAA	2 cut(s)	461, 828
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	503, 826
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	2 cut(s)	64, 281
XmnI	GAANNNNTTC	3 cut(s)	129, 428, 543
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.