Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

59805270 .. 59805836

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0466500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCAAGAAGTTGTTGAGCTACCCATGCTTCACCCTGAGAAATTTGTGAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTCTGTTATGGTCCTCCAGGGACTGGTAAAACACTTCTAGCTAGAGCTGTGGCTAACAGAACTGATGCTTGTTTCATTCGTGTTAGTGGGAGTGAACTTGTTCATAAGTATGCTGTTGATGCCATAGGAGGGGCTAGATTTGATGATGGTGTGGGTGGAGACAATGAGGTCCAGCGCACTATGCTTGAAATTGTGAATCAGCTAGATGGTTTTGATGCGCGTGGAAACATCAAAGTCTTGATGGCAACAAACAGGCCTGACACACTAGACCCAGCATTGTTACGTCCTGGACGATTGGATTGTAAGGTTGAGTTTGGCCTCCCACATATGGAGAGCAGGACGCAGATATTTAAGATCCATACACGAACAATGAATTGTGAAAGAGATATTAGGTTTGAACTTCTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

162

Amino Acids

17.98

Weight (kDa)

6.42

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	26 - 64	3.6e-11	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	65 - 133	1.3e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccII	CGCG	1 cut(s)	298
AclWI	GGATC	2 cut(s)	56, 427
AcsI	RAATTY	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	71, 101, 207, 406
AgsI	TTSAA	2 cut(s)	266, 476
AjnI	CCWGG	2 cut(s)	94, 364
AluBI	AGCT	5 cut(s)	19, 52, 119, 125, 280
AluI	AGCT	5 cut(s)	19, 52, 119, 125, 280
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	56, 427
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	332, 394
ApoI	RAATTY	1 cut(s)	41
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	255, 298
AspS9I	GGNCC	2 cut(s)	89, 247
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	89, 247
AxyI	CCTNAGG	1 cut(s)	69
BccI	CCATC	3 cut(s)	218, 278, 313
BciT130I	CCWGG	2 cut(s)	96, 366
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	5 cut(s)	116, 120, 213, 281, 344
Bme1390I	CCNGG	2 cut(s)	96, 366
Bme18I	GGWCC	2 cut(s)	89, 247
BmgT120I	GGNCC	2 cut(s)	89, 247
BmrFI	CCNGG	2 cut(s)	96, 366
BmsI	GCATC	3 cut(s)	133, 187, 283
BpmI	CTGGAG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 101, 207, 406
Bse1I	ACTGG	1 cut(s)	106
Bse21I	CCTNAGG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	96, 366
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	71, 101, 207, 406
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	334, 396
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	4 cut(s)	71, 101, 207, 406
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	334, 396
Bsp143I	GATC	2 cut(s)	61, 432
BspANI	GGCC	2 cut(s)	334, 396
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	298
BspPI	GGATC	2 cut(s)	56, 427
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	61, 432
Bst2UI	CCWGG	2 cut(s)	96, 366
BstDEI	CTNAG	3 cut(s)	36, 69, 486
BstFNI	CGCG	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	255, 298
BstKTI	GATC	2 cut(s)	64, 435
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	2 cut(s)	61, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 197, 259
BstNI	CCWGG	2 cut(s)	96, 366
BstSCI	CCNGG	2 cut(s)	94, 364
BstUI	CGCG	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	334, 396
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	2 cut(s)	255, 298
Cfr13I	GGNCC	2 cut(s)	89, 247
CseI	GACGC	1 cut(s)	427
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	9 cut(s)	19, 52, 119, 125, 131, 212, 280, 334, 396
CviKI_1	RGCY	9 cut(s)	19, 52, 119, 125, 131, 212, 280, 334, 396
DdeI	CTNAG	3 cut(s)	36, 69, 486
DpnI	GATC	2 cut(s)	63, 434
DpnII	GATC	2 cut(s)	61, 432
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	89, 247
Eco81I	CCTNAGG	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	94, 364
FaeI	CATG	1 cut(s)	28
FaiI	YATR	9 cut(s)	26, 87, 183, 189, 203, 260, 405, 407, 438
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	24
FauNDI	CATATG	1 cut(s)	405
FspBI	CTAG	5 cut(s)	116, 120, 213, 281, 344
GlaI	GCGC	2 cut(s)	254, 297
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	334, 396
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	2 cut(s)	255, 298
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	2 cut(s)	253, 296
HinP1I	GCGC	2 cut(s)	253, 296
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	274
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 197, 259
HpyF3I	CTNAG	3 cut(s)	36, 69, 486
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	2 cut(s)	253, 296
Kzo9I	GATC	2 cut(s)	61, 432
LweI	GCATC	3 cut(s)	133, 187, 283
MaeI	CTAG	5 cut(s)	116, 120, 213, 281, 344
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	2 cut(s)	63, 434
MboI	GATC	2 cut(s)	61, 432
MflI	RGATCY	1 cut(s)	432
MluCI	AATT	4 cut(s)	41, 57, 267, 451
MnlI	CCTC	5 cut(s)	75, 102, 200, 238, 407
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	96, 366
MvaI	CCWGG	2 cut(s)	96, 366
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	3 cut(s)	25, 197, 259
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	2 cut(s)	61, 432
NlaIII	CATG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	94, 364
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	2 cut(s)	94, 364
PspPI	GGNCC	2 cut(s)	89, 247
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	61, 432
Sau96I	GGNCC	2 cut(s)	89, 247
ScrFI	CCNGG	2 cut(s)	96, 366
SetI	ASST	9 cut(s)	21, 54, 121, 127, 249, 282, 364, 387, 473
SfaNI	GCATC	3 cut(s)	133, 187, 283
SinI	GGWCC	2 cut(s)	89, 247
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	4 cut(s)	41, 57, 267, 451
SseBI	AGGCCT	1 cut(s)	334
SspMI	CTAG	5 cut(s)	116, 120, 213, 281, 344
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	2 cut(s)	94, 364
TaiI	ACGT	1 cut(s)	364
TasI	AATT	4 cut(s)	41, 57, 267, 451
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TspDTI	ATGAA	3 cut(s)	142, 170, 464
Van91I	CCANNNNNTGG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	89, 247
XapI	RAATTY	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	5 cut(s)	116, 120, 213, 281, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.