Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

20270077 .. 20270575

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG094800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTGTTATGATAAAAATGTTTCACATTTGACACATTCTTCTGCTGTATGTTGGATTCCCATCACACCAGCCAAGGATTCCAGAAGAGTACCAGGGGTTTCTGATTGTGTAACTCCACCTCCCTGGAAATCTGAACCAAGCTTTGATGACTTGGCTATCAAAAGCTCAAGAAGGTCAGATATCAAGCATCAAGAAGCAGAGGATGAAAGTGAGCTGGACGGCTCTAGCCATAGGAGATTGTCATGGCCTCCTTCAGTTGAAAATGCTGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

91

Amino Acids

10.13

Weight (kDa)

5.72

Isoelectric Point (pI)

75.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	2 cut(s)	91, 122
AluBI	AGCT	3 cut(s)	141, 165, 214
AluI	AGCT	3 cut(s)	141, 165, 214
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	93, 124
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	93, 124
BmrFI	CCNGG	2 cut(s)	93, 124
BmsI	GCATC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	59
BsaJI	CCNNGG	3 cut(s)	72, 92, 122
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	93, 124
BseDI	CCNNGG	3 cut(s)	72, 92, 122
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	72, 92, 122
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	93, 124
Bst6I	CTCTTC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	208
BstNI	CCWGG	2 cut(s)	93, 124
BstSCI	CCNGG	2 cut(s)	91, 122
BstV1I	GCAGC	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	8 cut(s)	71, 141, 155, 165, 214, 222, 228, 247
CviKI_1	RGCY	8 cut(s)	71, 141, 155, 165, 214, 222, 228, 247
CviQI	GTAC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	91, 122
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	246
FaiI	YATR	4 cut(s)	9, 49, 231, 244
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	2 cut(s)	55, 77
Hpy188I	TCNGA	3 cut(s)	103, 133, 178
Hpy188III	TCNNGA	3 cut(s)	81, 168, 191
HpyAV	CCTTC	2 cut(s)	165, 261
Hsp92II	CATG	1 cut(s)	246
LpnPI	CCDG	7 cut(s)	78, 81, 94, 105, 109, 136, 200
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	30, 96
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	3 cut(s)	129, 193, 258
MseI	TTAA	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	93, 124
MvaI	CCWGG	2 cut(s)	93, 124
NlaIII	CATG	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	55, 77
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	91, 122
PspGI	CCWGG	2 cut(s)	91, 122
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	274
SatI	GCNGC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	93, 124
SetI	ASST	5 cut(s)	121, 143, 167, 176, 216
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	91, 122
StyI	CCWWGG	1 cut(s)	72
TfiI	GAWTC	2 cut(s)	55, 77
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	219
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.