Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

8786259 .. 8788922

Gene Structure 2664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1103700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCGATGGGGACTGACAGCACTTGGGTGGGGAAGAAGCCGCTGCGGCGCATCGGCGGCATGGCCGACGCCCTCGCCATCGCTTCGGATCTCGGCTTCTCCGTCGCCGCTCCTCCTACCCAGGAAGAGCTTCAGAACTTGTCCAGTAGTACTGGTGAAAAGGGTGATGACTTGATAAAGGTTTTGAGGGACCTTACCTCTGTTCAGAGAAAAATAGCAGATCTGCAAGTTGAACTCCAAGGGAGAAAGGATGATAAAAACGTAGCGCATTTGACACATGTGAGTGAAATGGAAAAGAAGTGTGAAACTTTGGCCAGGATTACTACCATACTGAAAGATGTGATTCAGAATAAGGATCGGATCATAGCCCGTCTTCAACAACCTTATTCACTCGATTGCATTCCAGTAGAAGCAGAGTATCAGAAACAATTCTCCGAATTATTGATGAAGGCTGCTAGTGATTATGGGGCCTTGACAGCATCAGTTGCAGATTTCCAGTGGAGTCAGACATTTAAGGAGCCTCCTTCGGTTTGGGGGGAAATGCTTCGTCCAATTCCTGTGGCATTAGCATCATGCACACGGTTCTTTGAAGCAATGTCTGCCATGAGGGAATCGTTTTCAACACTTCAGCATCTCAGAGTTGGTCATACTGATGCGCCTTCGCCTATAACACCAGGCAAGCAATCCTCCCGAAGAATACCAGGCGATTCTGAATGTGTAACTCCACCTCCTTGGAGAACTGAACCAAGCTTTGATGACTTAGCTATCAGAAGCTCAAGGAAGGCTGAAGTTGAGCACCAAGAAGCCGAGGATGAACACAGTGAGGTAGATGGAACTAGCCACCGGAGATTGTCATGGCCTCCATCAGTTAAAAAGAACGGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

296

Amino Acids

32.76

Weight (kDa)

5.87

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	19 - 208	3.6e-91	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	4 cut(s)	41, 46, 57, 108
AclWI	GGATC	3 cut(s)	96, 363, 368
AcoI	YGGCCR	2 cut(s)	63, 312
AcuI	CTGAAG	3 cut(s)	116, 611, 807
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	233, 377, 590, 621
AjnI	CCWGG	4 cut(s)	120, 314, 673, 700
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	130, 750, 764, 774
AluI	AGCT	4 cut(s)	130, 750, 764, 774
Alw21I	GWGCWC	1 cut(s)	798
AlwI	GGATC	3 cut(s)	96, 363, 368
AoxI	GGCC	4 cut(s)	63, 312, 468, 857
ApeKI	GCWGC	2 cut(s)	43, 452
Asp700I	GAANNNNTTC	3 cut(s)	129, 428, 543
AspLEI	GCGC	3 cut(s)	51, 268, 658
AspS9I	GGNCC	2 cut(s)	190, 468
AsuHPI	GGTGA	2 cut(s)	167, 176
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	798
BbvI	GCAGC	2 cut(s)	30, 439
BccI	CCATC	3 cut(s)	86, 824, 871
BciT130I	CCWGG	4 cut(s)	122, 316, 675, 702
BfaI	CTAG	2 cut(s)	456, 837
BglI	GCCNNNNNGGC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	6 cut(s)	41, 44, 47, 58, 108, 453
BlsI	GCNGC	6 cut(s)	42, 45, 48, 59, 109, 454
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	4 cut(s)	122, 316, 675, 702
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	190, 468
BmiI	GGNNCC	3 cut(s)	191, 469, 519
BmrFI	CCNGG	4 cut(s)	122, 316, 675, 702
BmsI	GCATC	5 cut(s)	60, 488, 578, 640, 643
BpiI	GAAGAC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	760
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	4 cut(s)	120, 238, 731, 807
BsaWI	WCCGGW	1 cut(s)	843
BsaXI	ACNNNNNCTCC	2 cut(s)	712, 742
Bse1I	ACTGG	4 cut(s)	144, 157, 404, 496
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	4 cut(s)	122, 316, 675, 702
BseDI	CCNNGG	4 cut(s)	120, 238, 731, 807
BseGI	GGATG	2 cut(s)	256, 817
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	4 cut(s)	144, 157, 404, 496
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	30, 439
BshFI	GGCC	4 cut(s)	65, 314, 470, 859
BsiHKAI	GWGCWC	1 cut(s)	798
BsiSI	CCGG	1 cut(s)	844
BslFI	GGGAC	2 cut(s)	25, 203
BsmFI	GGGAC	2 cut(s)	25, 203
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	4 cut(s)	65, 314, 470, 859
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	4 cut(s)	88, 220, 355, 360
BspACI	CCGC	4 cut(s)	41, 46, 57, 108
BspANI	GGCC	4 cut(s)	65, 314, 470, 859
BspCNI	CTCAG	1 cut(s)	648
BspLI	GGNNCC	3 cut(s)	191, 469, 519
BspPI	GGATC	3 cut(s)	96, 363, 368
BspQI	GCTCTTC	1 cut(s)	120
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	4 cut(s)	144, 157, 404, 496
BssECI	CCNNGG	4 cut(s)	120, 238, 731, 807
BssMI	GATC	4 cut(s)	88, 220, 355, 360
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	2 cut(s)	238, 731
Bst2UI	CCWGG	4 cut(s)	122, 316, 675, 702
Bst4CI	ACNGT	3 cut(s)	582, 821, 881
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	2 cut(s)	485, 599
BstC8I	GCNNGC	1 cut(s)	680
BstDEI	CTNAG	2 cut(s)	635, 760
BstF5I	GGATG	2 cut(s)	256, 817
BstHHI	GCGC	3 cut(s)	51, 268, 658
BstKTI	GATC	4 cut(s)	91, 223, 358, 363
BstMBI	GATC	4 cut(s)	88, 220, 355, 360
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 57, 476, 485, 599
BstNI	CCWGG	4 cut(s)	122, 316, 675, 702
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	4 cut(s)	120, 314, 673, 700
BstV1I	GCAGC	2 cut(s)	30, 439
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	88, 220
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstYI	RGATCY	2 cut(s)	88, 220
BsuRI	GGCC	4 cut(s)	65, 314, 470, 859
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	256, 817
BtsIMutI	CAGTG	2 cut(s)	503, 826
Cac8I	GCNNGC	1 cut(s)	680
CfoI	GCGC	3 cut(s)	51, 268, 658
Cfr13I	GGNCC	2 cut(s)	190, 468
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	5 cut(s)	61, 278, 573, 604, 855
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	635, 760
DpnI	GATC	4 cut(s)	90, 222, 357, 362
DpnII	GATC	4 cut(s)	88, 220, 355, 360
EaeI	YGGCCR	2 cut(s)	63, 312
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	238, 731
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	3 cut(s)	116, 611, 807
EcoO109I	RGGNCCY	2 cut(s)	190, 468
EcoRII	CCWGG	4 cut(s)	120, 314, 673, 700
EcoT14I	CCWWGG	2 cut(s)	238, 731
ErhI	CCWWGG	2 cut(s)	238, 731
FaeI	CATG	5 cut(s)	64, 281, 576, 607, 858
FaqI	GGGAC	2 cut(s)	25, 203
FatI	CATG	5 cut(s)	60, 277, 572, 603, 854
Fnu4HI	GCNGC	6 cut(s)	41, 44, 47, 58, 108, 453
FokI	GGATG	2 cut(s)	263, 824
Fsp4HI	GCNGC	6 cut(s)	41, 44, 47, 58, 108, 453
FspBI	CTAG	2 cut(s)	456, 837
GlaI	GCGC	3 cut(s)	50, 267, 657
GluI	GCNGC	6 cut(s)	41, 44, 47, 58, 108, 453
HaeIII	GGCC	4 cut(s)	65, 314, 470, 859
HapII	CCGG	1 cut(s)	844
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	3 cut(s)	51, 268, 658
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	64, 281, 576, 607, 858
Hin6I	GCGC	3 cut(s)	49, 266, 656
HinP1I	GCGC	3 cut(s)	49, 266, 656
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	4 cut(s)	343, 502, 611, 707
HpaII	CCGG	1 cut(s)	844
HphI	GGTGA	2 cut(s)	167, 176
Hpy188III	TCNNGA	1 cut(s)	690
Hpy99I	CGWCG	2 cut(s)	71, 107
HpyAV	CCTTC	4 cut(s)	442, 534, 669, 775
HpyCH4III	ACNGT	3 cut(s)	582, 821, 881
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	226, 399, 488, 576
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 57, 476, 485, 599
HpyF3I	CTNAG	2 cut(s)	635, 760
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	64, 281, 576, 607, 858
HspAI	GCGC	3 cut(s)	49, 266, 656
Kzo9I	GATC	4 cut(s)	88, 220, 355, 360
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	115, 517
Lsp1109I	GCAGC	2 cut(s)	30, 439
LweI	GCATC	5 cut(s)	60, 488, 578, 640, 643
MaeI	CTAG	2 cut(s)	456, 837
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	718
MalI	GATC	4 cut(s)	90, 222, 357, 362
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	4 cut(s)	88, 220, 355, 360
MboII	GAAGA	4 cut(s)	46, 137, 365, 705
MflI	RGATCY	2 cut(s)	88, 220
MhlI	GDGCHC	1 cut(s)	798
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	3 cut(s)	428, 437, 552
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	511
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	3 cut(s)	129, 428, 543
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	2 cut(s)	513, 870
MslI	CAYNNNNRTG	3 cut(s)	26, 282, 651
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	844
MspR9I	CCNGG	4 cut(s)	122, 316, 675, 702
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	4 cut(s)	122, 316, 675, 702
MwoI	GCNNNNNNNGC	5 cut(s)	46, 57, 476, 485, 599
NdeII	GATC	4 cut(s)	88, 220, 355, 360
NlaIII	CATG	5 cut(s)	64, 281, 576, 607, 858
NlaIV	GGNNCC	3 cut(s)	191, 469, 519
NmeAIII	GCCGAG	2 cut(s)	72, 832
NspI	RCATGY	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	26
PciI	ACATGT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	3 cut(s)	129, 428, 543
PfeI	GAWTC	3 cut(s)	343, 611, 707
PkrI	GCNGC	6 cut(s)	42, 45, 48, 59, 109, 454
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	190
PscI	ACATGT	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	4 cut(s)	120, 314, 673, 700
PspGI	CCWGG	4 cut(s)	120, 314, 673, 700
PspN4I	GGNNCC	3 cut(s)	191, 469, 519
PspPI	GGNCC	2 cut(s)	190, 468
PspPPI	RGGWCCY	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	88, 220
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	3 cut(s)	26, 282, 651
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	513, 870
SatI	GCNGC	6 cut(s)	41, 44, 47, 58, 108, 453
Sau3AI	GATC	4 cut(s)	88, 220, 355, 360
Sau96I	GGNCC	2 cut(s)	190, 468
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	4 cut(s)	122, 316, 675, 702
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	5 cut(s)	60, 488, 578, 640, 643
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	3 cut(s)	26, 282, 651
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	3 cut(s)	428, 437, 552
SsiI	CCGC	4 cut(s)	41, 46, 57, 108
SspMI	CTAG	2 cut(s)	456, 837
StyD4I	CCNGG	4 cut(s)	120, 314, 673, 700
StyI	CCWWGG	2 cut(s)	238, 731
TaaI	ACNGT	3 cut(s)	582, 821, 881
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	5, 393
TasI	AATT	3 cut(s)	428, 437, 552
TatI	WGTACW	1 cut(s)	149
TauI	GCSGC	4 cut(s)	43, 49, 60, 110
TfiI	GAWTC	3 cut(s)	343, 611, 707
Tru1I	TTAA	2 cut(s)	513, 870
Tru9I	TTAA	2 cut(s)	513, 870
TscAI	CASTG	2 cut(s)	503, 826
TseI	GCWGC	2 cut(s)	43, 452
TspDTI	ATGAA	2 cut(s)	461, 828
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	503, 826
VpaK11BI	GGWCC	1 cut(s)	190
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	3 cut(s)	129, 428, 543
XspI	CTAG	2 cut(s)	456, 837
ZrmI	AGTACT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.