Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

70706746 .. 70707466

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G044040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGAAGAAGACTTTTCTTAATGCTTGTTTTGGCATGTTTGCTTGGTTTATGCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCTTCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGGGAGAAATCCTTCGTCCAATTCCTGTTGCCTTAGCACCATGCACCAAGTTTTTCGAAGCAATGTCGTTCGCAACACTTCAGCATCTCGGAGTAGGTCATTCTGTTACCGCTTCTCCTATCAGACCTGCCAAGGATTCCAGAAGAGTACCAGGGCTTTCCAATTGTGTAACTCCACCTCCCTGGAAAACCGAACCAAGCTTTGATGACTTGGCTATCAAAACCTCAAGAAGGACGGATATCAAGCATCAAGAAGCAGAAGATGAAAGTGAGCTGGACGGCTCTAGCCATAGGAGATTGTCAAGGCCTCCTTCAGTTAAAAAGGATGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

166

Amino Acids

18.52

Weight (kDa)

8.82

Isoelectric Point (pI)

62.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	19 - 78	3.1e-24	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AciI	CCGC	1 cut(s)	276
AcuI	CTGAAG	4 cut(s)	99, 144, 230, 462
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	2 cut(s)	316, 347
AluBI	AGCT	3 cut(s)	113, 366, 439
AluI	AGCT	3 cut(s)	113, 366, 439
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	86
Asp700I	GAANNNNTTC	2 cut(s)	62, 177
AsuII	TTCGAA	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	2 cut(s)	318, 349
BfaI	CTAG	2 cut(s)	90, 450
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	318, 349
BmiI	GGNNCC	2 cut(s)	137, 153
BmrFI	CCNGG	2 cut(s)	318, 349
BmsI	GCATC	3 cut(s)	259, 421, 481
BpiI	GAAGAC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	297, 317, 347
BsaXI	ACNNNNNCTCC	4 cut(s)	265, 295, 328, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	318, 349
BseDI	CCNNGG	3 cut(s)	297, 317, 347
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	396
BsnI	GGCC	1 cut(s)	472
Bsp119I	TTCGAA	1 cut(s)	222
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	137, 153
BspMI	ACCTGC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	297, 317, 347
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	318, 349
Bst6I	CTCTTC	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 119
BstNI	CCWGG	2 cut(s)	318, 349
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	316, 347
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	2 cut(s)	37, 207
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	406
Eco57I	CTGAAG	4 cut(s)	99, 144, 230, 462
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	316, 347
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	40, 210
FaiI	YATR	6 cut(s)	38, 53, 99, 166, 208, 456
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FatI	CATG	2 cut(s)	36, 206
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	2 cut(s)	90, 450
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	472
Hin1II	CATG	2 cut(s)	40, 210
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	70, 257, 290
Hpy188III	TCNNGA	3 cut(s)	306, 393, 416
HpyAV	CCTTC	5 cut(s)	76, 168, 188, 390, 486
HpyCH4V	TGCA	2 cut(s)	55, 210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 119
HpyF3I	CTNAG	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	40, 210
LmnI	GCTCC	3 cut(s)	101, 135, 151
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	3 cut(s)	259, 421, 481
MaeI	CTAG	2 cut(s)	90, 450
MaeIII	GTNAC	2 cut(s)	271, 334
MboII	GAAGA	4 cut(s)	19, 22, 321, 437
MfeI	CAATTG	1 cut(s)	328
MluCI	AATT	4 cut(s)	62, 71, 186, 328
MnlI	CCTC	4 cut(s)	165, 354, 400, 483
MroXI	GAANNNNTTC	2 cut(s)	62, 177
MseI	TTAA	5 cut(s)	21, 107, 147, 483, 499
MspR9I	CCNGG	2 cut(s)	318, 349
MunI	CAATTG	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	318, 349
MwoI	GCNNNNNNNGC	2 cut(s)	110, 119
NlaIII	CATG	2 cut(s)	40, 210
NlaIV	GGNNCC	2 cut(s)	137, 153
NspI	RCATGY	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	472
PdmI	GAANNNNTTC	2 cut(s)	62, 177
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	316, 347
PspGI	CCWGG	2 cut(s)	316, 347
PspN4I	GGNNCC	2 cut(s)	137, 153
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SaqAI	TTAA	5 cut(s)	21, 107, 147, 483, 499
SatI	GCNGC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	318, 349
SetI	ASST	7 cut(s)	115, 265, 295, 346, 368, 392, 441
SfaNI	GCATC	3 cut(s)	259, 421, 481
SfuI	TTCGAA	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
Sse9I	AATT	4 cut(s)	62, 71, 186, 328
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	2 cut(s)	90, 450
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	316, 347
StyI	CCWWGG	1 cut(s)	297
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	62, 71, 186, 328
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	5 cut(s)	21, 107, 147, 483, 499
Tru9I	TTAA	5 cut(s)	21, 107, 147, 483, 499
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	95, 444
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	394
XceI	RCATGY	1 cut(s)	40
XmnI	GAANNNNTTC	2 cut(s)	62, 177
XspI	CTAG	2 cut(s)	90, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.