Rh2CG516500

HAUS augmin-like complex subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003213
Physical Location & Seq
Reverse (-)
69155977 .. 69156327
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG516500.1

Sequence Viewer

Length: 351 bp
ATGCAGGAAATTCTTCGTCCAATTCCTGTTGCCTTAGCATCATGCACCCGGTTTTTTGAAGCAATATCTGCTATGAGGGAATCGTTTGCAACACTTCAACATCTCAGAGTAGGTCATTCTGATACCGCTTCACCTATCACACCAGCCAAGGAATCCAGAAGAGTACCAGGGGTTTCCGATTGTGTAACTCCGCCTCCCTGGAAAACCGAACCAAGCTTTGATGACTTAGCTATCAAAAGCTCAAGAAGGCCGGATATCAAGCATCAAGAAGCAGAGGATGAAAGTGAGCTGGACGGCTCTAGCCATAGGAGATTGTCATGGCCTCCTTCAGTTAAAAAGGCTGCTACTTAA

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

6.91

Isoelectric Point (pI)

75.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 2 - 31 3.6e-07 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 126, 191
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 2 cut(s) 59, 98
AjnI CCWGG 2 cut(s) 166, 197
AluBI AGCT 4 cut(s) 216, 230, 240, 289
AluI AGCT 4 cut(s) 216, 230, 240, 289
AoxI GGCC 2 cut(s) 248, 320
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 123
BbvI GCAGC 1 cut(s) 328
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 2 cut(s) 168, 199
BcnI CCSGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 3 cut(s) 49, 168, 199
BmrFI CCNGG 3 cut(s) 49, 168, 199
BmsI GCATC 2 cut(s) 47, 271
Bpu10I CCTNAGC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 49
BsaJI CCNNGG 3 cut(s) 147, 167, 197
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
BseBI CCWGG 2 cut(s) 168, 199
BseDI CCNNGG 3 cut(s) 147, 167, 197
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 2 cut(s) 250, 322
BsiSI CCGG 2 cut(s) 49, 251
BsnI GGCC 2 cut(s) 250, 322
BspACI CCGC 2 cut(s) 126, 191
BspANI GGCC 2 cut(s) 250, 322
BspCNI CTCAG 1 cut(s) 117
BssECI CCNNGG 3 cut(s) 147, 167, 197
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 168, 199
Bst6I CTCTTC 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 68
BstDEI CTNAG 3 cut(s) 34, 104, 226
BstF5I GGATG 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 2 cut(s) 168, 199
BstSCI CCNGG 3 cut(s) 47, 166, 197
BstV1I GCAGC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 250, 322
BtsCI GGATG 1 cut(s) 283
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 42, 318
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 3 cut(s) 34, 104, 226
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
EciI GGCGGA 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 147
Eco32I GATATC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 166, 197
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 45, 321
FaiI YATR 4 cut(s) 43, 74, 306, 319
FatI CATG 2 cut(s) 41, 317
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 300
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 250, 322
HapII CCGG 2 cut(s) 49, 251
Hin1II CATG 2 cut(s) 45, 321
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 2 cut(s) 80, 152
HpaII CCGG 2 cut(s) 49, 251
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 107, 121, 178
Hpy188III TCNNGA 3 cut(s) 156, 243, 266
HpyAV CCTTC 2 cut(s) 240, 336
HpyCH4V TGCA 3 cut(s) 4, 45, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 34, 104, 226
Hsp92II CATG 2 cut(s) 45, 321
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 2 cut(s) 47, 271
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 184
MboII GAAGA 2 cut(s) 5, 171
MluCI AATT 2 cut(s) 9, 21
MnlI CCTC 4 cut(s) 69, 204, 268, 333
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 333, 349
MspI CCGG 2 cut(s) 49, 251
MspR9I CCNGG 3 cut(s) 49, 168, 199
MvaI CCWGG 2 cut(s) 168, 199
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 49
NlaIII CATG 2 cut(s) 45, 321
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 80, 152
PkrI GCNGC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 166, 197
PspGI CCWGG 2 cut(s) 166, 197
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 333, 349
SatI GCNGC 1 cut(s) 342
ScrFI CCNGG 3 cut(s) 49, 168, 199
SetI ASST 6 cut(s) 115, 136, 218, 232, 242, 291
SfaNI GCATC 2 cut(s) 47, 271
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 2 cut(s) 9, 21
SsiI CCGC 2 cut(s) 126, 191
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 47, 166, 197
StyI CCWWGG 1 cut(s) 147
TasI AATT 2 cut(s) 9, 21
TfiI GAWTC 2 cut(s) 80, 152
Tru1I TTAA 2 cut(s) 333, 349
Tru9I TTAA 2 cut(s) 333, 349
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 294
XapI RAATTY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.