Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

74611712 .. 74613864

Gene Structure 2153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCACAAATCAGTAAGCCATACTGCCAATAGTCATTCTGATACTGCTTCTCCTATAACACCAGCCAAGGATTCCAGAAGAGTACCAGGGGCTCTATCAAGGATTACCACGATTTTAAAAGATGTCATTCAGAACAAGGATCGTATCATTGCTTGTCTCCAACAGCCATATTCACTCGATTGCATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCGGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCATCAGAAATGCTTCGTCCAATTCCTGTTGCCTTAGCATCATGCACCCGGTTTTTTGAAGCAATATCTGCTATGAGGGAATCGTTTGCAACACTTCAACATCTCAGAGTAGGTCATTCTGATACCGCTTCACCTATCACACCAGCCAAGGAATCCAGAAGAGTACCAGGGGTTTCCGATTGTGTAACTCCGCCTCCCTGGAAAACTGAACCAAGCTTTGATGACTTAGCTATCAAAAGCTCAAGAAGGCCGGATATCAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

175

Amino Acids

19.26

Weight (kDa)

8.72

Isoelectric Point (pI)

66.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	30 - 118	2.4e-32	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	387, 452
AclWI	GGATC	1 cut(s)	147
AfaI	GTAC	2 cut(s)	84, 426
AgsI	TTSAA	2 cut(s)	320, 359
AjnI	CCWGG	3 cut(s)	85, 427, 458
AluBI	AGCT	3 cut(s)	477, 491, 501
AluI	AGCT	3 cut(s)	477, 491, 501
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	1 cut(s)	236
Asp700I	GAANNNNTTC	2 cut(s)	212, 273
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	223
BciT130I	CCWGG	3 cut(s)	87, 429, 460
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	4 cut(s)	87, 310, 429, 460
BmrFI	CCNGG	4 cut(s)	87, 310, 429, 460
BmsI	GCATC	2 cut(s)	272, 308
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	5 cut(s)	66, 86, 408, 428, 458
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 439, 469
Bse1I	ACTGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	3 cut(s)	87, 429, 460
BseDI	CCNNGG	5 cut(s)	66, 86, 408, 428, 458
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	310, 512
BsmAI	GTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	387, 452
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	378
BspPI	GGATC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	5 cut(s)	66, 86, 408, 428, 458
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	2 cut(s)	66, 408
Bst2UI	CCWGG	3 cut(s)	87, 429, 460
Bst6I	CTCTTC	2 cut(s)	73, 415
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	295, 365, 487
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 329
BstNI	CCWGG	3 cut(s)	87, 429, 460
BstSCI	CCNGG	4 cut(s)	85, 308, 427, 458
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	195
Csp6I	GTAC	2 cut(s)	83, 425
CviAII	CATG	1 cut(s)	303
CviQI	GTAC	2 cut(s)	83, 425
DdeI	CTNAG	3 cut(s)	295, 365, 487
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DraI	TTTAAA	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	73, 415
EarI	CTCTTC	2 cut(s)	73, 415
EciI	GGCGGA	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	66, 408
Eco24I	GRGCYC	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	517
EcoRII	CCWGG	3 cut(s)	85, 427, 458
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	66, 408
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	2 cut(s)	66, 408
FaeI	CATG	1 cut(s)	306
FaiI	YATR	6 cut(s)	21, 56, 169, 249, 304, 335
FatI	CATG	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	511
HapII	CCGG	2 cut(s)	310, 512
Hin1II	CATG	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	71, 341, 413
HpaII	CCGG	2 cut(s)	310, 512
HphI	GGTGA	1 cut(s)	384
Hpy188I	TCNGA	8 cut(s)	40, 132, 207, 220, 268, 368, 382, 439
Hpy188III	TCNNGA	3 cut(s)	75, 417, 504
HpyAV	CCTTC	2 cut(s)	226, 501
HpyCH4V	TGCA	4 cut(s)	4, 183, 306, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 329
HpyF3I	CTNAG	3 cut(s)	295, 365, 487
Hsp92II	CATG	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	272, 308
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	90, 432
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	3 cut(s)	212, 221, 282
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	2 cut(s)	330, 465
MroXI	GAANNNNTTC	2 cut(s)	212, 273
MseI	TTAA	3 cut(s)	116, 257, 526
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	2 cut(s)	310, 512
MspR9I	CCNGG	4 cut(s)	87, 310, 429, 460
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	3 cut(s)	87, 429, 460
MwoI	GCNNNNNNNGC	2 cut(s)	260, 329
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	306
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	212, 273
PfeI	GAWTC	3 cut(s)	71, 341, 413
PkrI	GCNGC	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	85, 427, 458
PspGI	CCWGG	3 cut(s)	85, 427, 458
RsaI	GTAC	2 cut(s)	84, 426
RsaNI	GTAC	2 cut(s)	83, 425
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	116, 257, 526
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	139
ScrFI	CCNGG	4 cut(s)	87, 310, 429, 460
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	5 cut(s)	376, 397, 479, 493, 503
SfaNI	GCATC	2 cut(s)	272, 308
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	3 cut(s)	212, 221, 282
SsiI	CCGC	2 cut(s)	387, 452
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	4 cut(s)	85, 308, 427, 458
StyI	CCWWGG	2 cut(s)	66, 408
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	212, 221, 282
TfiI	GAWTC	3 cut(s)	71, 341, 413
Tru1I	TTAA	3 cut(s)	116, 257, 526
Tru9I	TTAA	3 cut(s)	116, 257, 526
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	195
XmnI	GAANNNNTTC	2 cut(s)	212, 273
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.