Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

19002785 .. 19006180

Gene Structure 3396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGGACTGATAGTACCTGGGTGGGGAAGAAGCCTCTGAGGCGCATAGGAGGCATGTCCGACGCTCTCTCTATTGCTTCGGATCTTGGTTTCTCAGTTGCTGCTGCTCTGACTCCGTGCTTGGAAAGTCAATTAGGATCTGTCATTGTTTTGATGCTGGAAGAGCTTCAGAACTGGTCAAGTAGTACTGGTGAGAAAGGTGATGACTTGATAAGGGTTCTGAGGGAACTTATCAGTGTGCAAAGGAAAATAGCAGATCTGCAAGTTGAACTTCAAGGGAGGAAAGTGAGCTATTCGAATATCTTTTCTGCGCTGTTTAGGATTCACTGTGGGTTAATATGCACCAGAAATTTCTATAGTCCGTCTGAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCATCAGTTGCCGATTTCCAGTGGAGCCAGACGTTTAAGGAGCCTCCTTCAGAAATGCTCTGTCCAATTCCTGTTGCCTTAGCATCATGCACCCGGTTTTTCGAAGCACTGTCTGCTATAAGGGAATCGTTTGCAACACTCCAACATCTCAGAGCAGGTCATTCTGATACCGCTTCTCCAATCACACCAGCCAAGGATTCCAGAAGAGTACCAGGGGTTTGTGATTGTGTAACTCCAGCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

222

Amino Acids

24.15

Weight (kDa)

6.31

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	17 - 96	4.9e-11	HAUS augmin-like complex subunit 2
HAUS2	PF15003	123 - 187	4e-22	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	569
AciI	CCGC	1 cut(s)	594
AclWI	GGATC	2 cut(s)	90, 145
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	2 cut(s)	152, 456
AfaI	GTAC	3 cut(s)	16, 187, 633
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	269, 275
AjnI	CCWGG	2 cut(s)	17, 634
AluBI	AGCT	3 cut(s)	166, 291, 662
AluI	AGCT	3 cut(s)	166, 291, 662
AlwI	GGATC	2 cut(s)	90, 145
AlwNI	CAGNNNCTG	1 cut(s)	101
ApeKI	GCWGC	3 cut(s)	101, 104, 398
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	2 cut(s)	165, 374
AspLEI	GCGC	2 cut(s)	45, 313
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	2 cut(s)	203, 212
AsuII	TTCGAA	2 cut(s)	296, 525
BbvI	GCAGC	3 cut(s)	88, 91, 385
BciT130I	CCWGG	2 cut(s)	19, 636
BcnI	CCSGG	1 cut(s)	517
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	569
BglI	GCCNNNNNGGC	1 cut(s)	40
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	3 cut(s)	102, 105, 399
BlsI	GCNGC	3 cut(s)	103, 106, 400
BmcAI	AGTACT	1 cut(s)	187
Bme1390I	CCNGG	3 cut(s)	19, 517, 636
BmiI	GGNNCC	2 cut(s)	449, 465
BmrFI	CCNGG	3 cut(s)	19, 517, 636
BmsI	GCATC	3 cut(s)	144, 434, 515
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	502
Bpu14I	TTCGAA	2 cut(s)	296, 525
BpuMI	CCSGG	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	18, 615, 635
BsaXI	ACNNNNNCTCC	3 cut(s)	583, 613, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	3 cut(s)	179, 193, 442
BseBI	CCWGG	2 cut(s)	19, 636
BseDI	CCNNGG	3 cut(s)	18, 615, 635
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	5 cut(s)	29, 108, 212, 357, 586
BseNI	ACTGG	3 cut(s)	179, 193, 442
BseXI	GCAGC	3 cut(s)	88, 91, 385
BsiSI	CCGG	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	19
Bsp119I	TTCGAA	2 cut(s)	296, 525
Bsp143I	GATC	3 cut(s)	82, 137, 256
BspACI	CCGC	1 cut(s)	594
BspCNI	CTCAG	5 cut(s)	30, 107, 213, 358, 585
BspLI	GGNNCC	2 cut(s)	449, 465
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	90, 145
BspQI	GCTCTTC	1 cut(s)	156
BspT104I	TTCGAA	2 cut(s)	296, 525
BsrI	ACTGG	3 cut(s)	179, 193, 442
BssECI	CCNNGG	3 cut(s)	18, 615, 635
BssMI	GATC	3 cut(s)	82, 137, 256
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	19, 636
Bst4CI	ACNGT	2 cut(s)	329, 534
Bst6I	CTCTTC	2 cut(s)	156, 622
BstAPI	GCANNNNNTGC	2 cut(s)	431, 536
BstBI	TTCGAA	2 cut(s)	296, 525
BstDEI	CTNAG	6 cut(s)	38, 94, 221, 366, 502, 572
BstHHI	GCGC	2 cut(s)	45, 313
BstKTI	GATC	3 cut(s)	85, 140, 259
BstMBI	GATC	3 cut(s)	82, 137, 256
BstMWI	GCNNNNNNNGC	6 cut(s)	40, 51, 163, 422, 431, 536
BstNI	CCWGG	2 cut(s)	19, 636
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	17, 515, 634
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	88, 91, 385
BstX2I	RGATCY	3 cut(s)	82, 137, 256
BstYI	RGATCY	3 cut(s)	82, 137, 256
BtsIMutI	CAGTG	4 cut(s)	241, 325, 449, 530
BveI	ACCTGC	1 cut(s)	569
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	2 cut(s)	45, 313
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	15, 186, 632
CviAII	CATG	2 cut(s)	55, 510
CviJI	RGCY	8 cut(s)	34, 166, 291, 398, 450, 466, 614, 662
CviKI_1	RGCY	8 cut(s)	34, 166, 291, 398, 450, 466, 614, 662
CviQI	GTAC	3 cut(s)	15, 186, 632
DdeI	CTNAG	6 cut(s)	38, 94, 221, 366, 502, 572
DpnI	GATC	3 cut(s)	84, 139, 258
DpnII	GATC	3 cut(s)	82, 137, 256
Eam1104I	CTCTTC	2 cut(s)	156, 622
EarI	CTCTTC	2 cut(s)	156, 622
Eco130I	CCWWGG	1 cut(s)	615
Eco57I	CTGAAG	2 cut(s)	152, 456
EcoRII	CCWGG	2 cut(s)	17, 634
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	2 cut(s)	58, 513
FaiI	YATR	7 cut(s)	47, 56, 340, 357, 411, 511, 542
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	54, 509
Fnu4HI	GCNGC	3 cut(s)	102, 105, 399
Fsp4HI	GCNGC	3 cut(s)	102, 105, 399
FspBI	CTAG	1 cut(s)	402
GlaI	GCGC	2 cut(s)	44, 312
GluI	GCNGC	3 cut(s)	102, 105, 399
GsuI	CTGGAG	1 cut(s)	642
HapII	CCGG	1 cut(s)	517
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	45, 313
Hin1II	CATG	2 cut(s)	58, 513
Hin6I	GCGC	2 cut(s)	43, 311
HinP1I	GCGC	2 cut(s)	43, 311
HinfI	GANTC	4 cut(s)	112, 322, 548, 620
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	2 cut(s)	203, 212
Hpy188III	TCNNGA	1 cut(s)	624
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	388, 480
HpyCH4III	ACNGT	2 cut(s)	329, 534
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	5 cut(s)	241, 262, 342, 513, 557
HpyF10VI	GCNNNNNNNGC	6 cut(s)	40, 51, 163, 422, 431, 536
HpyF3I	CTNAG	6 cut(s)	38, 94, 221, 366, 502, 572
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	2 cut(s)	58, 513
HspAI	GCGC	2 cut(s)	43, 311
Kzo9I	GATC	3 cut(s)	82, 137, 256
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	4 cut(s)	413, 447, 463, 667
Lsp1109I	GCAGC	3 cut(s)	88, 91, 385
LweI	GCATC	3 cut(s)	144, 434, 515
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	3 cut(s)	84, 139, 258
MboI	GATC	3 cut(s)	82, 137, 256
MboII	GAAGA	3 cut(s)	40, 173, 639
MflI	RGATCY	3 cut(s)	82, 137, 256
MluCI	AATT	5 cut(s)	131, 349, 374, 383, 489
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	2 cut(s)	84, 589
MnlI	CCTC	6 cut(s)	33, 44, 45, 216, 273, 477
MroXI	GAANNNNTTC	2 cut(s)	165, 374
MseI	TTAA	3 cut(s)	335, 419, 459
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	3 cut(s)	19, 517, 636
MvaI	CCWGG	2 cut(s)	19, 636
MwoI	GCNNNNNNNGC	6 cut(s)	40, 51, 163, 422, 431, 536
NciI	CCSGG	1 cut(s)	517
NdeII	GATC	3 cut(s)	82, 137, 256
NlaIII	CATG	2 cut(s)	58, 513
NlaIV	GGNNCC	2 cut(s)	449, 465
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	2 cut(s)	296, 525
PciSI	GCTCTTC	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	165, 374
PfeI	GAWTC	3 cut(s)	322, 548, 620
PkrI	GCNGC	3 cut(s)	103, 106, 400
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	17, 634
PspGI	CCWGG	2 cut(s)	17, 634
PspN4I	GGNNCC	2 cut(s)	449, 465
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	3 cut(s)	82, 137, 256
RsaI	GTAC	3 cut(s)	16, 187, 633
RsaNI	GTAC	3 cut(s)	15, 186, 632
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	335, 419, 459
SatI	GCNGC	3 cut(s)	102, 105, 399
Sau3AI	GATC	3 cut(s)	82, 137, 256
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	19, 517, 636
SetI	ASST	7 cut(s)	20, 168, 202, 293, 458, 583, 664
SfaNI	GCATC	3 cut(s)	144, 434, 515
SfcI	CTRYAG	1 cut(s)	355
SfuI	TTCGAA	2 cut(s)	296, 525
Sse9I	AATT	5 cut(s)	131, 349, 374, 383, 489
SsiI	CCGC	1 cut(s)	594
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	3 cut(s)	17, 515, 634
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	2 cut(s)	329, 534
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	296, 525
TasI	AATT	5 cut(s)	131, 349, 374, 383, 489
TatI	WGTACW	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	322, 548, 620
Tru1I	TTAA	3 cut(s)	335, 419, 459
Tru9I	TTAA	3 cut(s)	335, 419, 459
TscAI	CASTG	4 cut(s)	241, 332, 449, 537
TseI	GCWGC	3 cut(s)	101, 104, 398
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	2 cut(s)	105, 351
TspRI	CASTG	4 cut(s)	241, 332, 449, 537
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	1 cut(s)	58
XmnI	GAANNNNTTC	2 cut(s)	165, 374
XspI	CTAG	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.