Rw2G044090

HAUS augmin-like complex subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003213
Physical Location & Seq
Reverse (-)
70780755 .. 70782575
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044090.1

Sequence Viewer

Length: 354 bp
ATGGACCAAGAAATGCTTCGTCCAATTCCTGTTGCCTTAGCATCATGCACCCGGTTTTTTGAAGCAATATCTGCTATGAGGGAATCGTTTGCAACACTTCAACATCTCAGAGTGGGTCATTCTGATACCGCTTCACCTATCACACCAGCCAAGGAATCCAGAAGAGTACCAGGGGTTTCCGATTGTGTAACTCCGCCTCCCTGGAAAACTGAACCAAGCTTTGATGACTTAGCTATCAAAAGCTCAAGAAGGCCGGATATCAAGCATCAAGAAGCAGAGGATGAAAGTGAGCTGGACGGCTCTAGCCATAGGAGATTGTCATGGCCTCCTTCGGTTAAAAAGGCTGCTACTTAA

Protein Analysis

117

Amino Acids

13.01

Weight (kDa)

6.41

Isoelectric Point (pI)

72.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 3 - 32 1.5e-07 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 129, 194
AfaI GTAC 1 cut(s) 168
AgsI TTSAA 2 cut(s) 62, 101
AjnI CCWGG 2 cut(s) 169, 200
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 4 cut(s) 219, 233, 243, 292
AluI AGCT 4 cut(s) 219, 233, 243, 292
AoxI GGCC 2 cut(s) 251, 323
ApeKI GCWGC 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 171, 202
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 3 cut(s) 52, 171, 202
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 3 cut(s) 52, 171, 202
BmsI GCATC 2 cut(s) 50, 274
Bpu10I CCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 3 cut(s) 150, 170, 200
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
BseBI CCWGG 2 cut(s) 171, 202
BseDI CCNNGG 3 cut(s) 150, 170, 200
BseGI GGATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 2 cut(s) 253, 325
BsiSI CCGG 2 cut(s) 52, 254
BsnI GGCC 2 cut(s) 253, 325
BspACI CCGC 2 cut(s) 129, 194
BspANI GGCC 2 cut(s) 253, 325
BspCNI CTCAG 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 150, 170, 200
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 171, 202
Bst6I CTCTTC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 71
BstDEI CTNAG 3 cut(s) 37, 107, 229
BstF5I GGATG 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 171, 202
BstSCI CCNGG 3 cut(s) 50, 169, 200
BstV1I GCAGC 1 cut(s) 331
BsuRI GGCC 2 cut(s) 253, 325
BtsCI GGATG 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 167
CviAII CATG 2 cut(s) 45, 321
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 3 cut(s) 37, 107, 229
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 150
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 169, 200
EcoRV GATATC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 48, 324
FaiI YATR 4 cut(s) 46, 77, 309, 322
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 2 cut(s) 44, 320
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 345
HaeIII GGCC 2 cut(s) 253, 325
HapII CCGG 2 cut(s) 52, 254
Hin1II CATG 2 cut(s) 48, 324
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 2 cut(s) 83, 155
HpaII CCGG 2 cut(s) 52, 254
HphI GGTGA 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 110, 124, 181
Hpy188III TCNNGA 3 cut(s) 159, 246, 269
HpyAV CCTTC 2 cut(s) 243, 339
HpyCH4V TGCA 2 cut(s) 48, 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 3 cut(s) 37, 107, 229
Hsp92II CATG 2 cut(s) 48, 324
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 50, 274
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 1 cut(s) 174
MluCI AATT 1 cut(s) 24
MnlI CCTC 4 cut(s) 72, 207, 271, 336
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 2 cut(s) 336, 352
MspI CCGG 2 cut(s) 52, 254
MspR9I CCNGG 3 cut(s) 52, 171, 202
MvaI CCWGG 2 cut(s) 171, 202
MwoI GCNNNNNNNGC 1 cut(s) 71
NciI CCSGG 1 cut(s) 52
NlaIII CATG 2 cut(s) 48, 324
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 83, 155
PkrI GCNGC 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 169, 200
PspGI CCWGG 2 cut(s) 169, 200
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 336, 352
SatI GCNGC 1 cut(s) 345
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 3 cut(s) 52, 171, 202
SetI ASST 5 cut(s) 139, 221, 235, 245, 294
SfaNI GCATC 2 cut(s) 50, 274
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 1 cut(s) 24
SsiI CCGC 2 cut(s) 129, 194
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 50, 169, 200
StyI CCWWGG 1 cut(s) 150
TasI AATT 1 cut(s) 24
TfiI GAWTC 2 cut(s) 83, 155
Tru1I TTAA 2 cut(s) 336, 352
Tru9I TTAA 2 cut(s) 336, 352
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.