Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003151.1

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

37647 .. 38331

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003151.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaaggctgctagtgattatggagcattaacagcttcagttgccgatttccagtggagccagacatttaaggagcctccttcagtatggggagaaatccttcgtccaattcctgttgccttagcaccatgcaccaagtttttcgaagcaatgtcgttcgtaacacttcagcatctcggagtaggtcattctgttaccgcttctcctatcagacctgccaaggattccagaagagtaccagggctttccaattgtgtaactccacctccctggaaaaccgaaccaagctttgatgacttggctatcaaaacctcaagaaggacggatatcaagcatcaagaagcagaagatgaaagggagctggacggctctagccataggagattgtcaaggcctccttcagttaaaaagggatgctacttaaaagctgacttttgttgtgagccaatgtatgttttgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

8.29

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	1 cut(s)	198
AcuI	CTGAAG	4 cut(s)	21, 66, 152, 384
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	318
AjnI	CCWGG	2 cut(s)	238, 269
AluBI	AGCT	4 cut(s)	35, 288, 361, 428
AluI	AGCT	4 cut(s)	35, 288, 361, 428
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	99
AsuII	TTCGAA	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	240, 271
BfaI	CTAG	2 cut(s)	12, 372
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	2 cut(s)	240, 271
BmiI	GGNNCC	2 cut(s)	59, 75
BmrFI	CCNGG	2 cut(s)	240, 271
BmsI	GCATC	3 cut(s)	181, 343, 404
Bpu10I	CCTNAGC	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	219, 239, 269
BsaXI	ACNNNNNCTCC	4 cut(s)	187, 217, 250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	240, 271
BseDI	CCNNGG	3 cut(s)	219, 239, 269
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	318
BsnI	GGCC	1 cut(s)	394
Bsp119I	TTCGAA	1 cut(s)	144
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	59, 75
BspMI	ACCTGC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	3 cut(s)	219, 239, 269
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	240, 271
Bst6I	CTCTTC	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 41
BstNI	CCWGG	2 cut(s)	240, 271
BstSCI	CCNGG	2 cut(s)	238, 269
BstXI	CCANNNNNNTGG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	1 cut(s)	129
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	328
Eco57I	CTGAAG	4 cut(s)	21, 66, 152, 384
EcoNI	CCTNNNNNAGG	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	238, 269
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	132
FaiI	YATR	5 cut(s)	21, 88, 130, 378, 453
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FatI	CATG	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	12, 372
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	286
HinfI	GANTC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	179, 212
Hpy188III	TCNNGA	3 cut(s)	228, 315, 338
HpyAV	CCTTC	4 cut(s)	90, 110, 312, 408
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 41
HpyF3I	CTNAG	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	132
LmnI	GCTCC	4 cut(s)	23, 57, 73, 358
LweI	GCATC	3 cut(s)	181, 343, 404
MaeI	CTAG	2 cut(s)	12, 372
MaeIII	GTNAC	3 cut(s)	160, 193, 256
MboII	GAAGA	2 cut(s)	243, 359
MfeI	CAATTG	1 cut(s)	250
MluCI	AATT	2 cut(s)	108, 250
MnlI	CCTC	4 cut(s)	87, 276, 322, 405
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	4 cut(s)	29, 69, 405, 422
MspR9I	CCNGG	2 cut(s)	240, 271
MunI	CAATTG	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	240, 271
MwoI	GCNNNNNNNGC	2 cut(s)	32, 41
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	2 cut(s)	59, 75
NspV	TTCGAA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	238, 269
PspGI	CCWGG	2 cut(s)	238, 269
PspN4I	GGNNCC	2 cut(s)	59, 75
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	29, 69, 405, 422
SatI	GCNGC	1 cut(s)	9
ScrFI	CCNGG	2 cut(s)	240, 271
SetI	ASST	8 cut(s)	37, 187, 217, 268, 290, 314, 363, 430
SfaNI	GCATC	3 cut(s)	181, 343, 404
SfuI	TTCGAA	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	108, 250
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	2 cut(s)	12, 372
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	2 cut(s)	238, 269
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	108, 250
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	4 cut(s)	29, 69, 405, 422
Tru9I	TTAA	4 cut(s)	29, 69, 405, 422
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	17, 366
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	2 cut(s)	12, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.