Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Reverse (-)

30382918 .. 30394100

Gene Structure 11183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG302100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGTCCGATGCTCTCTCTATTGCTTCAGATCTTGGTTTCTCGGTCGCCGCTGCTCCCACTCCGGAAGAGCTTCAGAGCTGGTCGAGTAGTACTGGTGAGAAAGGTGATGACTTGATAAGGGTTCTGAGGGAACTTACCAGTGGGCAAAGGAAAATAGCAGATCTGCAAGTTGAACTTCAAGGGAGAAAAGAGATTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

66

Amino Acids

7.13

Weight (kDa)

4.54

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	1 - 64	8.1e-16	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	1 cut(s)	48
AcuI	CTGAAG	2 cut(s)	9, 56
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	173, 179, 197
AluBI	AGCT	2 cut(s)	70, 78
AluI	AGCT	2 cut(s)	70, 78
Aor13HI	TCCGGA	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	107, 116
BbvI	GCAGC	1 cut(s)	37
BglII	AGATCT	2 cut(s)	28, 160
BisI	GCNGC	2 cut(s)	48, 51
BlsI	GCNGC	2 cut(s)	49, 52
BmcAI	AGTACT	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	97, 138
BseAI	TCCGGA	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	97, 138
BseXI	GCAGC	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	28, 160
BspACI	CCGC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	117
BspEI	TCCGGA	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	97, 138
BssMI	GATC	2 cut(s)	28, 160
Bst6I	CTCTTC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	31, 163
BstMBI	GATC	2 cut(s)	28, 160
BstMCI	CGRYCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	28, 160
BstYI	RGATCY	2 cut(s)	28, 160
BtsIMutI	CAGTG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	90
CviJI	RGCY	2 cut(s)	70, 78
CviKI_1	RGCY	2 cut(s)	70, 78
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	30, 162
DpnII	GATC	2 cut(s)	28, 160
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	9, 56
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
Fnu4HI	GCNGC	2 cut(s)	48, 51
Fsp4HI	GCNGC	2 cut(s)	48, 51
GluI	GCNGC	2 cut(s)	48, 51
HapII	CCGG	1 cut(s)	62
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	107, 116
Hpy188I	TCNGA	4 cut(s)	7, 28, 75, 126
Hpy188III	TCNNGA	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	166
HpyF3I	CTNAG	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	28, 160
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	4 cut(s)	64, 75, 78, 151
Lsp1109I	GCAGC	1 cut(s)	37
MalI	GATC	2 cut(s)	30, 162
MboI	GATC	2 cut(s)	28, 160
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	2 cut(s)	28, 160
MnlI	CCTC	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	28, 160
PciSI	GCTCTTC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	49, 52
PsuI	RGATCY	2 cut(s)	28, 160
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	60
SatI	GCNGC	2 cut(s)	48, 51
Sau3AI	GATC	2 cut(s)	28, 160
ScaI	AGTACT	1 cut(s)	91
SetI	ASST	3 cut(s)	72, 80, 106
SsiI	CCGC	1 cut(s)	48
TaqI	TCGA	1 cut(s)	83
TaqII	GACCGA	1 cut(s)	31
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	193
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	69
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.