Rh2BG546600

HAUS augmin-like complex subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003213
Physical Location & Seq
Reverse (-)
75548636 .. 75629354
80719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG546600.1

Sequence Viewer

Length: 867 bp
ATGTCGATGGGGAGTGATAGTACCTGGGTGGGGAAGAAGCCTCTGAGACGAATCGGAGGCATGTCCGATGCTCTCTCTATTGCTTCGGATCTTGGTTTCTCAGTCGCCGCTGCTCCCACTCCGGAAGAGCTTCAGAGCTGGTCGAGTAGTACTGGTGAGAAAGGTGATGACTTGATAAGGGTTCTGAGGGAACTTACCAGTGTGCAAAGGAAAATAGCTGATCTGCAAGTTGAACTTCAAGGGAGAAAAGATGATAAAAATGTATCACATTTGACACATGTGAGCGAAATGGAAAAGAAGTGTGAAACTCTATCGAGGATTACTACGATTCTAAAAGATGTCATTCAGAACAAGGATCGTATCATTGCTCGTCTCCAACAACCATATTCACTCGATTGTATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCTTCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGGGAGAAATCCTTCGTCCAATTCCTGTTGCCTTAGCACCATGCACCAAGTTTTTCGAAGCAATGTCGTTCGCAACACTTCAGCATCTCGGAGTAGGTCATTCTGTTACCGCTTCTCCTATCAGACCTGCCAAGGATTCCAGAAGAGTACCAGGGCTTTCCAATTGTGTAACTCCACCTCCCTGGAAAACCGAACCAAGCTTTGATGACTTGGCTATCAAAACCTCAAGAAGGACGGATATCAAGCATCAAGAAGCAGAAGATGAAAGTGAGCTGGACGGCTCTAGCCATAGGAGATTGTCAAGGCCTCCTTCAGTTAAAAAGGATGCTACTTAA

Protein Analysis

288

Amino Acids

31.89

Weight (kDa)

6.61

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 19 - 200 1.8e-84 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 667
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 2 cut(s) 108, 642
AclWI GGATC 2 cut(s) 96, 363
AcuI CTGAAG 5 cut(s) 116, 465, 510, 596, 828
AfaI GTAC 3 cut(s) 22, 151, 681
AfiI CCNNNNNNNGG 2 cut(s) 30, 762
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 2 cut(s) 233, 239
AjnI CCWGG 3 cut(s) 23, 682, 713
AluBI AGCT 6 cut(s) 130, 138, 218, 479, 732, 805
AluI AGCT 6 cut(s) 130, 138, 218, 479, 732, 805
Alw26I GTCTC 2 cut(s) 40, 377
AlwI GGATC 2 cut(s) 96, 363
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 1 cut(s) 836
ApeKI GCWGC 2 cut(s) 110, 452
Asp700I GAANNNNTTC 3 cut(s) 129, 428, 543
AsuHPI GGTGA 2 cut(s) 167, 176
AsuII TTCGAA 1 cut(s) 588
BbvI GCAGC 2 cut(s) 97, 439
BceAI ACGGC 1 cut(s) 826
BciT130I CCWGG 3 cut(s) 25, 684, 715
BcoDI GTCTC 2 cut(s) 40, 377
BfaI CTAG 2 cut(s) 456, 816
BfuAI ACCTGC 1 cut(s) 667
BisI GCNGC 3 cut(s) 108, 111, 453
BlsI GCNGC 3 cut(s) 109, 112, 454
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 25, 684, 715
BmiI GGNNCC 2 cut(s) 503, 519
BmrFI CCNGG 3 cut(s) 25, 684, 715
BmsI GCATC 4 cut(s) 58, 625, 787, 847
Bpu10I CCTNAGC 1 cut(s) 565
Bpu14I TTCGAA 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 742
BsaJI CCNNGG 4 cut(s) 24, 663, 683, 713
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 5 cut(s) 34, 631, 661, 694, 724
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 762
Bse1I ACTGG 4 cut(s) 157, 198, 404, 496
Bse3DI GCAATG 2 cut(s) 363, 600
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 3 cut(s) 25, 684, 715
BseDI CCNNGG 4 cut(s) 24, 663, 683, 713
BseGI GGATG 1 cut(s) 862
BseLI CCNNNNNNNGG 2 cut(s) 30, 762
BseMI GCAATG 2 cut(s) 363, 600
BseMII CTCAG 3 cut(s) 35, 114, 176
BseNI ACTGG 4 cut(s) 157, 198, 404, 496
BseXI GCAGC 2 cut(s) 97, 439
BshFI GGCC 1 cut(s) 838
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 30, 762
BsmAI GTCTC 2 cut(s) 40, 377
BsmBI CGTCTC 2 cut(s) 40, 377
BsnI GGCC 1 cut(s) 838
Bsp119I TTCGAA 1 cut(s) 588
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 88, 220, 355
BspACI CCGC 2 cut(s) 108, 642
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 3 cut(s) 36, 113, 177
BspEI TCCGGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 503, 519
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 2 cut(s) 96, 363
BspQI GCTCTTC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 588
BsrDI GCAATG 2 cut(s) 363, 600
BsrI ACTGG 4 cut(s) 157, 198, 404, 496
BssECI CCNNGG 4 cut(s) 24, 663, 683, 713
BssMI GATC 3 cut(s) 88, 220, 355
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 3 cut(s) 25, 684, 715
Bst6I CTCTTC 2 cut(s) 120, 670
BstBI TTCGAA 1 cut(s) 588
BstDEI CTNAG 4 cut(s) 44, 100, 185, 565
BstENI CCTNNNNNAGG 1 cut(s) 760
BstF5I GGATG 1 cut(s) 862
BstKTI GATC 3 cut(s) 91, 223, 358
BstMAI GTCTC 2 cut(s) 40, 377
BstMBI GATC 3 cut(s) 88, 220, 355
BstMWI GCNNNNNNNGC 2 cut(s) 476, 485
BstNI CCWGG 3 cut(s) 25, 684, 715
BstNSI RCATGY 2 cut(s) 64, 281
BstSCI CCNGG 3 cut(s) 23, 682, 713
BstV1I GCAGC 2 cut(s) 97, 439
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 714
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 1 cut(s) 838
BtsCI GGATG 1 cut(s) 862
BtsIMutI CAGTG 3 cut(s) 205, 411, 503
BveI ACCTGC 1 cut(s) 667
Csp6I GTAC 3 cut(s) 21, 150, 680
CviAII CATG 3 cut(s) 61, 278, 573
CviQI GTAC 3 cut(s) 21, 150, 680
DdeI CTNAG 4 cut(s) 44, 100, 185, 565
DpnI GATC 3 cut(s) 90, 222, 357
DpnII GATC 3 cut(s) 88, 220, 355
Eam1104I CTCTTC 2 cut(s) 120, 670
EarI CTCTTC 2 cut(s) 120, 670
Eco130I CCWWGG 1 cut(s) 663
Eco147I AGGCCT 1 cut(s) 838
Eco32I GATATC 1 cut(s) 772
Eco57I CTGAAG 5 cut(s) 116, 465, 510, 596, 828
EcoNI CCTNNNNNAGG 1 cut(s) 760
EcoRII CCWGG 3 cut(s) 23, 682, 713
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 663
Esp3I CGTCTC 2 cut(s) 40, 377
FaeI CATG 3 cut(s) 64, 281, 576
FaiI YATR 7 cut(s) 62, 279, 385, 465, 532, 574, 822
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 826, 858
FatI CATG 3 cut(s) 60, 277, 572
Fnu4HI GCNGC 3 cut(s) 108, 111, 453
Fsp4HI GCNGC 3 cut(s) 108, 111, 453
FspBI CTAG 2 cut(s) 456, 816
GluI GCNGC 3 cut(s) 108, 111, 453
HaeIII GGCC 1 cut(s) 838
HapII CCGG 1 cut(s) 122
Hin1II CATG 3 cut(s) 64, 281, 576
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 3 cut(s) 51, 328, 668
HpaII CCGG 1 cut(s) 122
HphI GGTGA 2 cut(s) 167, 176
Hpy188III TCNNGA 4 cut(s) 122, 672, 759, 782
HpyAV CCTTC 5 cut(s) 442, 534, 554, 756, 852
HpyCH4V TGCA 3 cut(s) 205, 226, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 485
HpyF3I CTNAG 4 cut(s) 44, 100, 185, 565
Hsp92II CATG 3 cut(s) 64, 281, 576
Kpn2I TCCGGA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 88, 220, 355
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 4 cut(s) 118, 467, 501, 517
Lsp1109I GCAGC 2 cut(s) 97, 439
LweI GCATC 4 cut(s) 58, 625, 787, 847
MaeI CTAG 2 cut(s) 456, 816
MaeIII GTNAC 2 cut(s) 637, 700
MalI GATC 3 cut(s) 90, 222, 357
MboI GATC 3 cut(s) 88, 220, 355
MboII GAAGA 4 cut(s) 46, 137, 687, 803
MfeI CAATTG 1 cut(s) 694
MflI RGATCY 1 cut(s) 88
MluCI AATT 4 cut(s) 428, 437, 552, 694
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 8 cut(s) 50, 51, 180, 309, 531, 720, 766, 849
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 3 cut(s) 129, 428, 543
MseI TTAA 4 cut(s) 473, 513, 849, 865
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 3 cut(s) 25, 684, 715
MunI CAATTG 1 cut(s) 694
MvaI CCWGG 3 cut(s) 25, 684, 715
MwoI GCNNNNNNNGC 2 cut(s) 476, 485
NdeII GATC 3 cut(s) 88, 220, 355
NlaIII CATG 3 cut(s) 64, 281, 576
NlaIV GGNNCC 2 cut(s) 503, 519
NspI RCATGY 2 cut(s) 64, 281
NspV TTCGAA 1 cut(s) 588
PceI AGGCCT 1 cut(s) 838
PciI ACATGT 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 3 cut(s) 129, 428, 543
PfeI GAWTC 3 cut(s) 51, 328, 668
PkrI GCNGC 3 cut(s) 109, 112, 454
PscI ACATGT 1 cut(s) 277
Psp6I CCWGG 3 cut(s) 23, 682, 713
PspGI CCWGG 3 cut(s) 23, 682, 713
PspN4I GGNNCC 2 cut(s) 503, 519
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 3 cut(s) 22, 151, 681
RsaNI GTAC 3 cut(s) 21, 150, 680
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 4 cut(s) 473, 513, 849, 865
SatI GCNGC 3 cut(s) 108, 111, 453
Sau3AI GATC 3 cut(s) 88, 220, 355
ScaI AGTACT 1 cut(s) 151
ScrFI CCNGG 3 cut(s) 25, 684, 715
SfaNI GCATC 4 cut(s) 58, 625, 787, 847
SfuI TTCGAA 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 757
SmoI CTYRAG 1 cut(s) 757
Sse9I AATT 4 cut(s) 428, 437, 552, 694
SseBI AGGCCT 1 cut(s) 838
SsiI CCGC 2 cut(s) 108, 642
SspMI CTAG 2 cut(s) 456, 816
StuI AGGCCT 1 cut(s) 838
StyD4I CCNGG 3 cut(s) 23, 682, 713
StyI CCWWGG 1 cut(s) 663
TaqI TCGA 5 cut(s) 5, 143, 314, 393, 588
TasI AATT 4 cut(s) 428, 437, 552, 694
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 3 cut(s) 51, 328, 668
Tru1I TTAA 4 cut(s) 473, 513, 849, 865
Tru9I TTAA 4 cut(s) 473, 513, 849, 865
TscAI CASTG 3 cut(s) 205, 411, 503
TseI GCWGC 2 cut(s) 110, 452
TspDTI ATGAA 2 cut(s) 461, 810
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 3 cut(s) 205, 411, 503
XagI CCTNNNNNAGG 1 cut(s) 760
XceI RCATGY 2 cut(s) 64, 281
XmnI GAANNNNTTC 3 cut(s) 129, 428, 543
XspI CTAG 2 cut(s) 456, 816
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.