Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005982.1

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

8471 .. 9155

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005982.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtttgcttggtttatgcagaaacaattctctgaattactgatgaaggctgctagtgattatggagcattaacagcttcagttgccgatttccagtggagccagacatttaaggagcctccttcagtatggggagaaatccttcgtccaattcctgttgccttagcaccatgcaccaagtttttcgaagcaatgtcgttcgcaacacttcagcatctcggagtaggtcattctgttaccgcttctcctatcagacctgccaaggattccagaagagtaccagggctttccaattgtgtaactccacctccctggaaaaccgaaccaagctttgatgacttggctatcaaaacctcaagaaggacggatatcaagcatcaagaagcagaagatgaaagtgagctggacggctctagccataggagattgtcaaggcctccttcagttaaaaaggatgctacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

154

Amino Acids

17.16

Weight (kDa)

7.82

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	1 cut(s)	240
AcuI	CTGAAG	4 cut(s)	63, 108, 194, 426
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	360
AjnI	CCWGG	2 cut(s)	280, 311
AluBI	AGCT	3 cut(s)	77, 330, 403
AluI	AGCT	3 cut(s)	77, 330, 403
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	2 cut(s)	26, 141
AsuII	TTCGAA	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	424
BciT130I	CCWGG	2 cut(s)	282, 313
BfaI	CTAG	2 cut(s)	54, 414
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	282, 313
BmiI	GGNNCC	2 cut(s)	101, 117
BmrFI	CCNGG	2 cut(s)	282, 313
BmsI	GCATC	3 cut(s)	223, 385, 445
Bpu10I	CCTNAGC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	261, 281, 311
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 292, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse1I	ACTGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	282, 313
BseDI	CCNNGG	3 cut(s)	261, 281, 311
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	360
BsnI	GGCC	1 cut(s)	436
Bsp119I	TTCGAA	1 cut(s)	186
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	101, 117
BspMI	ACCTGC	1 cut(s)	265
BspT104I	TTCGAA	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	261, 281, 311
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	282, 313
Bst6I	CTCTTC	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	163
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstNI	CCWGG	2 cut(s)	282, 313
BstSCI	CCNGG	2 cut(s)	280, 311
BstV1I	GCAGC	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	171
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	370
Eco57I	CTGAAG	4 cut(s)	63, 108, 194, 426
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	280, 311
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	174
FaiI	YATR	5 cut(s)	17, 63, 130, 172, 420
FalI	AAGNNNNNCTT	2 cut(s)	424, 456
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	54, 414
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	436
Hin1II	CATG	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	34, 221, 254
Hpy188III	TCNNGA	3 cut(s)	270, 357, 380
HpyAV	CCTTC	5 cut(s)	40, 132, 152, 354, 450
HpyCH4V	TGCA	2 cut(s)	19, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpyF3I	CTNAG	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	174
LmnI	GCTCC	3 cut(s)	65, 99, 115
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	3 cut(s)	223, 385, 445
MaeI	CTAG	2 cut(s)	54, 414
MaeIII	GTNAC	2 cut(s)	235, 298
MboII	GAAGA	2 cut(s)	285, 401
MfeI	CAATTG	1 cut(s)	292
MluCI	AATT	4 cut(s)	26, 35, 150, 292
MnlI	CCTC	4 cut(s)	129, 318, 364, 447
MroXI	GAANNNNTTC	2 cut(s)	26, 141
MseI	TTAA	4 cut(s)	71, 111, 447, 463
MspR9I	CCNGG	2 cut(s)	282, 313
MunI	CAATTG	1 cut(s)	292
MvaI	CCWGG	2 cut(s)	282, 313
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	2 cut(s)	101, 117
NspV	TTCGAA	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	436
PdmI	GAANNNNTTC	2 cut(s)	26, 141
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	280, 311
PspGI	CCWGG	2 cut(s)	280, 311
PspN4I	GGNNCC	2 cut(s)	101, 117
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	71, 111, 447, 463
SatI	GCNGC	1 cut(s)	51
ScrFI	CCNGG	2 cut(s)	282, 313
SetI	ASST	7 cut(s)	79, 229, 259, 310, 332, 356, 405
SfaNI	GCATC	3 cut(s)	223, 385, 445
SfuI	TTCGAA	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	26, 35, 150, 292
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	2 cut(s)	54, 414
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	280, 311
StyI	CCWWGG	1 cut(s)	261
TaqI	TCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	26, 35, 150, 292
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	4 cut(s)	71, 111, 447, 463
Tru9I	TTAA	4 cut(s)	71, 111, 447, 463
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	59, 408
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	26, 141
XspI	CTAG	2 cut(s)	54, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.