Rh5BG556200

HAUS augmin-like complex subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003213
Physical Location & Seq
Forward (+)
88497939 .. 88514460
16522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG556200.1

Sequence Viewer

Length: 372 bp
ATGTCCGATGCTCTCTCTATTGCTTCGGATCTTGGTTTCTCTGTCGCCGCTGCTCCCACTCCGGAAGAGCTTCAGAGCTGGTCGAGTAGTGCTGGTGATAAAGGTGATGACTTGATAAGGGTTCTGAGGGAACTTACCAGTGTGCAAAGGAAAATAGCAGATCTGTCCAAGCGAACTGGAGGCGATGTCAAAAATGGAACAAGGCCGCTCCTGGAGGTGAGATCACACTTGGCCTTTGATTTGGATGAGCCTAAACTTCTCAAAGCAATTAGGAGATTTCATTGCCTAGCGCCTCAACTTGGGAATAGGAAGAACTCAATTCTGAAACTTTACTTTTGGTTCTCTTCTCTTTATCAGTCACTCTGCTTCTGA

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

9.03

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 1 - 55 1.6e-11 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 2 cut(s) 48, 206
AclWI GGATC 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 299
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 70, 78
AluI AGCT 2 cut(s) 70, 78
AlwI GGATC 1 cut(s) 36
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 2 cut(s) 203, 231
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 3 cut(s) 107, 116, 229
BbvI GCAGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 1 cut(s) 287
BfoI RGCGCY 1 cut(s) 293
BglII AGATCT 1 cut(s) 160
BisI GCNGC 3 cut(s) 48, 51, 206
BlsI GCNGC 3 cut(s) 49, 52, 207
Bme1390I CCNGG 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 212
BpmI CTGGAG 2 cut(s) 198, 233
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 138, 181
Bse3DI GCAATG 1 cut(s) 280
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 138, 181
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 205, 233
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 299
BsnI GGCC 2 cut(s) 205, 233
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 3 cut(s) 28, 160, 221
BspACI CCGC 2 cut(s) 48, 206
BspANI GGCC 2 cut(s) 205, 233
BspCNI CTCAG 1 cut(s) 117
BspEI TCCGGA 1 cut(s) 61
BspPI GGATC 1 cut(s) 36
BspQI GCTCTTC 1 cut(s) 60
BsrBI CCGCTC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 2 cut(s) 138, 181
BssMI GATC 3 cut(s) 28, 160, 221
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 2 cut(s) 60, 349
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 250
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 31, 163, 224
BstMBI GATC 3 cut(s) 28, 160, 221
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 2 cut(s) 28, 160
BstYI RGATCY 2 cut(s) 28, 160
BsuRI GGCC 2 cut(s) 205, 233
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 292
CviJI RGCY 5 cut(s) 70, 78, 205, 233, 250
CviKI_1 RGCY 5 cut(s) 70, 78, 205, 233, 250
DdeI CTNAG 1 cut(s) 125
DpnI GATC 3 cut(s) 30, 162, 223
DpnII GATC 3 cut(s) 28, 160, 221
Eam1104I CTCTTC 2 cut(s) 60, 349
EarI CTCTTC 2 cut(s) 60, 349
Eco57I CTGAAG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 48, 51, 206
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 3 cut(s) 48, 51, 206
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 291
GluI GCNGC 3 cut(s) 48, 51, 206
GsuI CTGGAG 2 cut(s) 198, 233
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 2 cut(s) 205, 233
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 292
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HpaII CCGG 1 cut(s) 62
HphI GGTGA 3 cut(s) 107, 116, 229
Hpy188I TCNGA 6 cut(s) 7, 28, 75, 126, 324, 371
Hpy188III TCNNGA 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 125
HspAI GCGC 1 cut(s) 290
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 28, 160, 221
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 58, 213
LpnPI CCDG 7 cut(s) 64, 75, 78, 151, 162, 197, 224
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 357
MalI GATC 3 cut(s) 30, 162, 223
MbiI CCGCTC 1 cut(s) 208
MboI GATC 3 cut(s) 28, 160, 221
MboII GAAGA 3 cut(s) 77, 322, 336
MflI RGATCY 2 cut(s) 28, 160
MluCI AATT 2 cut(s) 267, 318
MnlI CCTC 4 cut(s) 120, 173, 208, 303
MroI TCCGGA 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NdeII GATC 3 cut(s) 28, 160, 221
NmuCI GTSAC 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 69
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 3 cut(s) 49, 52, 207
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PsuI RGATCY 2 cut(s) 28, 160
SapI GCTCTTC 1 cut(s) 60
SatI GCNGC 3 cut(s) 48, 51, 206
Sau3AI GATC 3 cut(s) 28, 160, 221
ScrFI CCNGG 1 cut(s) 212
SetI ASST 4 cut(s) 72, 80, 106, 219
Sse9I AATT 2 cut(s) 267, 318
SsiI CCGC 2 cut(s) 48, 206
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 267, 318
TauI GCSGC 2 cut(s) 50, 208
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.