Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003213

Physical Location & Seq

Genomic Coordinates Forward (+)

13077470 .. 13080592

Gene Structure 3123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCGATGGGGAGTGATAGTACCTGGGTGGGGAAGAAGCCTCTGAGACGAATCGGAGGCATGTCCGATGCTCTCTCTATTGCTTCGGATCTTGGTTTCTCAGTCTCCGCTGCTCCCACTCCGGAAGAGCTTCAGAGCTGGTCGAGTAGTACTGGTGAGAAAGGTGATGACTTGATAAGGGTTCTGAGGGAACTTACCAGTGTGCAAAGGAAAATAGCAGATCTGCAAGTTGAACTTCAAGGGAGAAAAGATGATAAAAATGTATCACATTTGACACATGTGAGTGAAATGGAAAAGAAGTGTGAAACTCTATCGAGGATTACTACAATTCTAAAAGACGTCATTCAGAACAAGGATCGTATCATTGCTCGTCTCCAACAACCATATTCACTCGATTGTATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCTTCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGGGGGAAATGCTTCGTCCAATTCCTGTTGCCTTAGCATCATGCACCAGGTTTTTCGAAGCAATGTCTGCTATGAGGGAGTCGTTTGCTACACTTCAACATCTCAGAGTAGGTCATTCTGATACCTCTTCTCCTGTCACACCAGCCAAGGATTCCAGAAGAGTACTAGGGGTTTCCGATTGTGTAACTCCACCTCCCTGGAAAACCGAACCAAGCTTTGATGACTTGGCTATCAAAAGCTCAAGAAGGACAGATATCAAGCATCAAGAAGCAGAAGATGAAAGTGAGCTGGACGGCTCTAGCCACAGGAGATTGTCCTGGCCTCCTTCTGTTAAAAAGGCTGCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

293

Amino Acids

32.55

Weight (kDa)

6.12

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	19 - 208	1.8e-89	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32980
fragaria_vesca	FvH4_6g42360
malus_domestica	MD09G1113600.v1.1 MD17G1103700.v1.1
prunus_persica	Prupe.3G211000_v2.0.a1 Prupe.3G211000_v2.0.a1
pyrus_communis	pycom09g03770 pycom17g09780
rosa_chinensis	RchiOBHm_Chr1g0329411 RchiOBHm_Chr1g0361251 RchiOBHm_Chr2g0158231 RchiOBHm_Chr2g0158271
rosa_laevigata	RLG00000021067 RLG00000021072 RLG00000029885 RLG00000029893
rosa_multiflora	Rmu_sc0003151.1_g000015 Rmu_sc0005982.1_g000004 Rmu_sc0007763.1_g000001 Rmu_sc0008904.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091550 Rroxscaffold_2G00091600
rosa_rugosa	Rorug01G0079600 Rorug01G0079700 Rorug01G0079700 Rorug02G0466400 Rorug02G0466500
rosa_samantha	Rh1BG078100 Rh1CG094800 Rh2BG546600 Rh2CG516500 Rh2CG516800 Rh3BG302100 Rh5BG556200
rosa_wichuraiana	Rw2G044040 Rw2G044090 Rw2G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	2 cut(s)	96, 363
AcuI	CTGAAG	3 cut(s)	116, 465, 510
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	3 cut(s)	22, 151, 696
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	233, 239, 629
AjnI	CCWGG	4 cut(s)	23, 578, 728, 848
AluBI	AGCT	6 cut(s)	130, 138, 479, 747, 771, 820
AluI	AGCT	6 cut(s)	130, 138, 479, 747, 771, 820
Alw26I	GTCTC	3 cut(s)	40, 109, 377
AlwI	GGATC	2 cut(s)	96, 363
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	851
ApeKI	GCWGC	3 cut(s)	110, 452, 872
Asp700I	GAANNNNTTC	3 cut(s)	129, 428, 543
AsuHPI	GGTGA	2 cut(s)	167, 176
AsuII	TTCGAA	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	97, 439, 859
BceAI	ACGGC	1 cut(s)	841
BciT130I	CCWGG	4 cut(s)	25, 580, 730, 850
BcoDI	GTCTC	3 cut(s)	40, 109, 377
BfaI	CTAG	3 cut(s)	456, 698, 831
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	3 cut(s)	111, 453, 873
BlsI	GCNGC	3 cut(s)	112, 454, 874
BmcAI	AGTACT	2 cut(s)	151, 696
Bme1390I	CCNGG	4 cut(s)	25, 580, 730, 850
BmiI	GGNNCC	2 cut(s)	503, 519
BmrFI	CCNGG	4 cut(s)	25, 580, 730, 850
BmsI	GCATC	3 cut(s)	58, 578, 802
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu14I	TTCGAA	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	757
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	24, 678, 728
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	5 cut(s)	34, 646, 676, 709, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	4 cut(s)	157, 198, 404, 496
Bse3DI	GCAATG	2 cut(s)	363, 600
BseAI	TCCGGA	1 cut(s)	121
BseBI	CCWGG	4 cut(s)	25, 580, 730, 850
BseDI	CCNNGG	3 cut(s)	24, 678, 728
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	2 cut(s)	363, 600
BseMII	CTCAG	4 cut(s)	35, 114, 176, 649
BseNI	ACTGG	4 cut(s)	157, 198, 404, 496
BseXI	GCAGC	3 cut(s)	97, 439, 859
BshFI	GGCC	1 cut(s)	853
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	3 cut(s)	40, 109, 377
BsmBI	CGTCTC	2 cut(s)	40, 377
BsnI	GGCC	1 cut(s)	853
Bsp119I	TTCGAA	1 cut(s)	588
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	88, 220, 355
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	853
BspCNI	CTCAG	4 cut(s)	36, 113, 177, 648
BspEI	TCCGGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	503, 519
BspPI	GGATC	2 cut(s)	96, 363
BspQI	GCTCTTC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	588
BsrDI	GCAATG	2 cut(s)	363, 600
BsrI	ACTGG	4 cut(s)	157, 198, 404, 496
BssECI	CCNNGG	3 cut(s)	24, 678, 728
BssMI	GATC	3 cut(s)	88, 220, 355
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	4 cut(s)	25, 580, 730, 850
Bst6I	CTCTTC	3 cut(s)	120, 664, 685
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	588
BstDEI	CTNAG	5 cut(s)	44, 100, 185, 565, 635
BstKTI	GATC	3 cut(s)	91, 223, 358
BstMAI	GTCTC	3 cut(s)	40, 109, 377
BstMBI	GATC	3 cut(s)	88, 220, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 485, 599
BstNI	CCWGG	4 cut(s)	25, 580, 730, 850
BstNSI	RCATGY	2 cut(s)	64, 281
BstSCI	CCNGG	4 cut(s)	23, 578, 728, 848
BstV1I	GCAGC	3 cut(s)	97, 439, 859
BstX2I	RGATCY	2 cut(s)	88, 220
BstXI	CCANNNNNNTGG	1 cut(s)	729
BstYI	RGATCY	2 cut(s)	88, 220
BsuRI	GGCC	1 cut(s)	853
BtsIMutI	CAGTG	3 cut(s)	205, 411, 503
CsiI	ACCWGGT	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	21, 150, 695
CviAII	CATG	3 cut(s)	61, 278, 573
CviQI	GTAC	3 cut(s)	21, 150, 695
DdeI	CTNAG	5 cut(s)	44, 100, 185, 565, 635
DpnI	GATC	3 cut(s)	90, 222, 357
DpnII	GATC	3 cut(s)	88, 220, 355
Eam1104I	CTCTTC	3 cut(s)	120, 664, 685
EarI	CTCTTC	3 cut(s)	120, 664, 685
Eco130I	CCWWGG	1 cut(s)	678
Eco32I	GATATC	1 cut(s)	787
Eco57I	CTGAAG	3 cut(s)	116, 465, 510
EcoRII	CCWGG	4 cut(s)	23, 578, 728, 848
EcoRV	GATATC	1 cut(s)	787
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
Esp3I	CGTCTC	2 cut(s)	40, 377
FaeI	CATG	3 cut(s)	64, 281, 576
FaiI	YATR	7 cut(s)	62, 279, 385, 465, 532, 574, 605
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	3 cut(s)	60, 277, 572
Fnu4HI	GCNGC	3 cut(s)	111, 453, 873
Fsp4HI	GCNGC	3 cut(s)	111, 453, 873
FspBI	CTAG	3 cut(s)	456, 698, 831
GluI	GCNGC	3 cut(s)	111, 453, 873
HaeIII	GGCC	1 cut(s)	853
HapII	CCGG	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	64, 281, 576
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	3 cut(s)	51, 611, 683
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	167, 176
Hpy188III	TCNNGA	4 cut(s)	122, 687, 774, 797
HpyAV	CCTTC	4 cut(s)	442, 534, 771, 867
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	205, 226, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 485, 599
HpyF3I	CTNAG	5 cut(s)	44, 100, 185, 565, 635
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	64, 281, 576
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	88, 220, 355
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	4 cut(s)	118, 467, 501, 517
Lsp1109I	GCAGC	3 cut(s)	97, 439, 859
LweI	GCATC	3 cut(s)	58, 578, 802
MabI	ACCWGGT	1 cut(s)	578
MaeI	CTAG	3 cut(s)	456, 698, 831
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	667, 715
MalI	GATC	3 cut(s)	90, 222, 357
MboI	GATC	3 cut(s)	88, 220, 355
MboII	GAAGA	5 cut(s)	46, 137, 651, 702, 818
MflI	RGATCY	2 cut(s)	88, 220
MluCI	AATT	4 cut(s)	327, 428, 437, 552
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	9 cut(s)	50, 51, 180, 309, 531, 600, 667, 735, 864
MroI	TCCGGA	1 cut(s)	121
MroXI	GAANNNNTTC	3 cut(s)	129, 428, 543
MseI	TTAA	4 cut(s)	473, 513, 864, 880
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	4 cut(s)	25, 580, 730, 850
MvaI	CCWGG	4 cut(s)	25, 580, 730, 850
MwoI	GCNNNNNNNGC	3 cut(s)	476, 485, 599
NdeII	GATC	3 cut(s)	88, 220, 355
NlaIII	CATG	3 cut(s)	64, 281, 576
NlaIV	GGNNCC	2 cut(s)	503, 519
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	2 cut(s)	64, 281
NspV	TTCGAA	1 cut(s)	588
PciI	ACATGT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	120
PdmI	GAANNNNTTC	3 cut(s)	129, 428, 543
PfeI	GAWTC	2 cut(s)	51, 683
PkrI	GCNGC	3 cut(s)	112, 454, 874
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PscI	ACATGT	1 cut(s)	277
Psp6I	CCWGG	4 cut(s)	23, 578, 728, 848
PspGI	CCWGG	4 cut(s)	23, 578, 728, 848
PspN4I	GGNNCC	2 cut(s)	503, 519
PsuI	RGATCY	2 cut(s)	88, 220
RsaI	GTAC	3 cut(s)	22, 151, 696
RsaNI	GTAC	3 cut(s)	21, 150, 695
RseI	CAYNNNNRTG	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	4 cut(s)	473, 513, 864, 880
SatI	GCNGC	3 cut(s)	111, 453, 873
Sau3AI	GATC	3 cut(s)	88, 220, 355
ScaI	AGTACT	2 cut(s)	151, 696
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	4 cut(s)	25, 580, 730, 850
SexAI	ACCWGGT	1 cut(s)	578
SfaNI	GCATC	3 cut(s)	58, 578, 802
SfuI	TTCGAA	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	4 cut(s)	327, 428, 437, 552
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	3 cut(s)	456, 698, 831
StyD4I	CCNGG	4 cut(s)	23, 578, 728, 848
StyI	CCWWGG	1 cut(s)	678
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	5 cut(s)	5, 143, 314, 393, 588
TasI	AATT	4 cut(s)	327, 428, 437, 552
TatI	WGTACW	2 cut(s)	149, 694
TfiI	GAWTC	2 cut(s)	51, 683
Tru1I	TTAA	4 cut(s)	473, 513, 864, 880
Tru9I	TTAA	4 cut(s)	473, 513, 864, 880
TscAI	CASTG	3 cut(s)	205, 411, 503
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	3 cut(s)	110, 452, 872
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	2 cut(s)	461, 825
TspRI	CASTG	3 cut(s)	205, 411, 503
XceI	RCATGY	2 cut(s)	64, 281
XmnI	GAANNNNTTC	3 cut(s)	129, 428, 543
XspI	CTAG	3 cut(s)	456, 698, 831
ZraI	GACGTC	1 cut(s)	340
ZrmI	AGTACT	2 cut(s)	151, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.