Rorug01G0079700

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
13000997 .. 13004952
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0079700.1

Sequence Viewer

Length: 807 bp
ATGCGGAAGAAGCAAGAGTACACTCACACATTGAGCCGAATGGGTTATGCACGCTTGGAGCACAAAATGAAAAAGGAAAATCCTACTGAAGAAGTAACAAGAGTCAAATTGTGGACTAAAGCGCATGAGAAAGGCGGTAAACCTGTTAATGAAGTTGTTGGTGCCATATTGGAAGGTTTAAAAGCGTGTAATGAGTCACAGGAGAACCCACCATCTGCAAATTCCATAAGGGATGATGCACTTGCAAGAGTTTTAGGACCTGAAACTCGTGGACGAGTTCGTGGGCTTGGGTTTGGTACTACACCATCTCGAGTCAATGCTACTATTCAAGGCAGTGCAAAGGTTAAAGAACTTGAAGCTACTGTATTAAGTCAATCACAGAGGCTTGCTCAGGTTGAAGCAAAGCTTGAAGCTCTTTTAAAGGCCACTCAGGAGGTCCCTCAACAGAACAGAAACTTAGAGCAAATGATAAATGCACATGCAACTACTTCTCAGTCACAACAATCAAGTCGACCAATCAATGCTCCAAGCAATGATCTTGAAAATAGAAGATGTGCACTTTTGAATTGGAACAATTATGAAGAAGATGAAGTAGTGGCTGAAGGGAAGATCTCTTCAACAAATCCAAGTACAAAAGTTCATTGTGTGCCTCTTGGACGAGATTGTTGGAAGGTTTGGGTTGATGTGGTGTTTGATAAGTATCAGACTATGGAAGTGTATAGAGCAACCATGGATGCCAAACAACTTGGTGAAGCTGTAGGAAGCACTCTTGCATGGCCCAAAAGCTCCATTAAAATGCTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

268

Amino Acids

29.88

Weight (kDa)

9.08

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 2 - 102 1.7e-12 Plant transposase (Ptta/En/Spm family)
DUF8039 PF26133 182 - 266 2.3e-14 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 511
AciI CCGC 2 cut(s) 4, 135
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 2 cut(s) 108, 621
AfaI GTAC 3 cut(s) 20, 298, 631
AgsI TTSAA 7 cut(s) 329, 356, 398, 410, 542, 565, 618
AluBI AGCT 5 cut(s) 359, 406, 413, 755, 786
AluI AGCT 5 cut(s) 359, 406, 413, 755, 786
Alw21I GWGCWC 2 cut(s) 63, 559
Alw44I GTGCAC 1 cut(s) 555
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 423, 776
ApaLI GTGCAC 1 cut(s) 555
ApoI RAATTY 1 cut(s) 220
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 3 cut(s) 257, 436, 777
AsuHPI GGTGA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 309
AvaII GGWCC 2 cut(s) 257, 436
BaeGI GKGCMC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 161
BarI GAAGNNNNNNTAC 1 cut(s) 34
BauI CACGAG 1 cut(s) 267
Bbv12I GWGCWC 2 cut(s) 63, 559
BccI CCATC 2 cut(s) 220, 313
BfmI CTRYAG 1 cut(s) 756
BglII AGATCT 1 cut(s) 609
Bme18I GGWCC 2 cut(s) 257, 436
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 3 cut(s) 257, 436, 777
BmiI GGNNCC 2 cut(s) 163, 438
BmsI GCATC 2 cut(s) 226, 724
BplI GAGNNNNNCTC 2 cut(s) 373, 405
Bpu10I CCTNAGC 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 538
Bse8I GATNNNNATC 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 2 cut(s) 238, 739
BseJI GATNNNNATC 1 cut(s) 699
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 3 cut(s) 404, 443, 506
BseSI GKGCMC 1 cut(s) 559
BshFI GGCC 2 cut(s) 425, 778
BshNI GGYRCC 1 cut(s) 161
BsiHKAI GWGCWC 2 cut(s) 63, 559
BsiHKCI CYCGRG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 2 cut(s) 425, 778
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 2 cut(s) 63, 559
Bsp143I GATC 2 cut(s) 535, 609
Bsp19I CCATGG 1 cut(s) 729
BspACI CCGC 2 cut(s) 4, 135
BspANI GGCC 2 cut(s) 425, 778
BspCNI CTCAG 3 cut(s) 403, 442, 505
BspLI GGNNCC 2 cut(s) 163, 438
BspT107I GGYRCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 2 cut(s) 535, 609
BssSI CACGAG 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 619
BstC8I GCNNGC 2 cut(s) 52, 387
BstDEI CTNAG 5 cut(s) 390, 429, 457, 492, 804
BstDSI CCRYGG 1 cut(s) 729
BstF5I GGATG 2 cut(s) 238, 739
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 538, 612
BstMBI GATC 2 cut(s) 535, 609
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 1 cut(s) 559
BstX2I RGATCY 1 cut(s) 609
BstYI RGATCY 1 cut(s) 609
BsuRI GGCC 2 cut(s) 425, 778
BtgI CCRYGG 1 cut(s) 729
BtsCI GGATG 2 cut(s) 238, 739
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 52, 387
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 257, 436, 777
Csp6I GTAC 3 cut(s) 19, 297, 630
CviAII CATG 4 cut(s) 125, 479, 730, 774
CviQI GTAC 3 cut(s) 19, 297, 630
DdeI CTNAG 5 cut(s) 390, 429, 457, 492, 804
DpnI GATC 2 cut(s) 537, 611
DpnII GATC 2 cut(s) 535, 609
DraI TTTAAA 2 cut(s) 180, 420
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 729
Eco47I GGWCC 2 cut(s) 257, 436
Eco57I CTGAAG 2 cut(s) 108, 621
Eco88I CYCGRG 1 cut(s) 309
EcoO109I RGGNCCY 2 cut(s) 257, 436
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 4 cut(s) 128, 482, 733, 777
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 422
FatI CATG 4 cut(s) 124, 478, 729, 773
FblI GTMKAC 1 cut(s) 511
FokI GGATG 2 cut(s) 245, 746
GlaI GCGC 1 cut(s) 123
HaeIII GGCC 2 cut(s) 425, 778
HhaI GCGC 1 cut(s) 124
Hin1II CATG 4 cut(s) 128, 482, 733, 777
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 102, 194, 312
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 6 cut(s) 21, 114, 140, 272, 512, 557
Hpy188I TCNGA 1 cut(s) 705
Hpy188III TCNNGA 3 cut(s) 309, 431, 539
Hpy8I GTNNAC 6 cut(s) 21, 114, 140, 272, 512, 557
HpyAV CCTTC 3 cut(s) 167, 596, 664
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 9 cut(s) 50, 218, 239, 245, 338, 476, 482, 557, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 5 cut(s) 390, 429, 457, 492, 804
Hsp92II CATG 4 cut(s) 128, 482, 733, 777
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 535, 609
LmnI GCTCC 4 cut(s) 58, 529, 791, 804
LpnPI CCDG 5 cut(s) 156, 185, 273, 377, 416
LweI GCATC 2 cut(s) 226, 724
MaeIII GTNAC 3 cut(s) 94, 195, 495
MalI GATC 2 cut(s) 537, 611
MboI GATC 2 cut(s) 535, 609
MboII GAAGA 7 cut(s) 19, 101, 561, 593, 596, 606, 619
MflI RGATCY 1 cut(s) 609
MhlI GDGCHC 2 cut(s) 63, 559
MluCI AATT 4 cut(s) 107, 220, 565, 574
MlyI GAGTC 3 cut(s) 111, 203, 321
MmeI TCCRAC 1 cut(s) 647
MnlI CCTC 4 cut(s) 375, 427, 450, 660
MseI TTAA 6 cut(s) 147, 179, 345, 368, 419, 792
MslI CAYNNNNRTG 1 cut(s) 794
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 729
NdeII GATC 2 cut(s) 535, 609
NlaIII CATG 4 cut(s) 128, 482, 733, 777
NlaIV GGNNCC 2 cut(s) 163, 438
NmuCI GTSAC 2 cut(s) 195, 495
NspI RCATGY 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 309
PleI GAGTC 3 cut(s) 110, 202, 320
PpsI GAGTC 3 cut(s) 110, 202, 320
PpuMI RGGWCCY 2 cut(s) 257, 436
Psp5II RGGWCCY 2 cut(s) 257, 436
PspN4I GGNNCC 2 cut(s) 163, 438
PspPI GGNCC 3 cut(s) 257, 436, 777
PspPPI RGGWCCY 2 cut(s) 257, 436
PsuI RGATCY 1 cut(s) 609
RsaI GTAC 3 cut(s) 20, 298, 631
RsaNI GTAC 3 cut(s) 19, 297, 630
RseI CAYNNNNRTG 1 cut(s) 794
SalI GTCGAC 1 cut(s) 510
SaqAI TTAA 6 cut(s) 147, 179, 345, 368, 419, 792
Sau3AI GATC 2 cut(s) 535, 609
Sau96I GGNCC 3 cut(s) 257, 436, 777
SchI GAGTC 3 cut(s) 111, 203, 321
SduI GDGCHC 2 cut(s) 63, 559
SfaNI GCATC 2 cut(s) 226, 724
SfcI CTRYAG 1 cut(s) 756
Sfr274I CTCGAG 1 cut(s) 309
SinI GGWCC 2 cut(s) 257, 436
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 4 cut(s) 107, 220, 565, 574
SsiI CCGC 2 cut(s) 4, 135
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 2 cut(s) 310, 511
TasI AATT 4 cut(s) 107, 220, 565, 574
TatI WGTACW 2 cut(s) 18, 629
Tru1I TTAA 6 cut(s) 147, 179, 345, 368, 419, 792
Tru9I TTAA 6 cut(s) 147, 179, 345, 368, 419, 792
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 195, 495
Tsp45I GTSAC 2 cut(s) 195, 495
TspDTI ATGAA 5 cut(s) 83, 165, 594, 603, 629
TspRI CASTG 1 cut(s) 340
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 2 cut(s) 257, 436
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 482
XhoI CTCGAG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.