MD10G1201000.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000200
Physical Location & Seq
Forward (+)
29937539 .. 29938957
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1201000.v1.1.491

Sequence Viewer

Length: 1419 bp
ATGCTTTCATTCAAAGATTTAGTTACATCCTACTCTACAAGGTATCATCATCAGCAGAGCAAAATGGCCACAGAATCCGTCGAGGTTGAAACCGTTGAGAAGCAAACAGTTAAACCATCCTCCCAAACTCCTCATGTCCTTAGAAATTTTAAGCTCTCTCTTTTGGATCAGTTTTCTCCTGTAGCTTACATCCCATTCCTTCTCTTCTATCCCAATGTTGTTAGTACTACTACCAGTAACGTCAGTACTCATAGTGTCAAGGCCATCAATGAAAGATATCAGCATCTAATAAAATCATTATCTGAAATTCTCACTCACTACTACCCTTTAGCAGGAAGAATCAAAGGTAATGTCGTGATCGTATGTAATGATGATGGAGCTGAATTCGTGAAAGCCCATGTCAAGTGTTCCTTATCGGAGATTTTGGAACACCCAGATGCTGAAATGTTAAGACGATTACTTCCAATTGAGCCTGAGTCCACAGAAGCAGTCACGGGCAAGTTGCTTGCTGTGCAAGTCAATTTGTTTGAGTGTGGAGGAATGGCTATTGGATTGACCATTTCACATAAGATTGCTGATGCCTCAACTGTATGCACGTTCATCAATTCTTGGGCAGCAACAGCCCATAAATCCAACAAGGTAATGCTTCCCCAGTTTGGTGTTGCATCTCTTTTTCCACCCCTTGATTTCTCCGACTCGGAGCCACCATCCATGATATATGTTAAAGAAAAGTGCACAACTAGAAGGTATGTGTTTGATGACTCAAAGATTTCCGTTCTCCAATCTAAAGTATCCAGTTCACTTGTGCCCAAACCAACAAGGGTGGAAGCAATTTCAGCACTCATTTGGAAATGCGCGATTGAAGCATCGCCAAAGTCATCATCCAACACGTTGGGGTCTAGTCCAGTAAGGCCATCTATATTTCATCAAGCTGTGAACTTACGCAAAAGGGTTACACCGCCCTTGCCAGATAACTTGGCTGGGAATCTTCTTGTTTTATCTACATCAAAGGCCGAAGAAAGTACTACCAGTGTGTTTGATTTAAAAGACTTGGTTGCGAAAATCCGGGCCGGGATTGAAGAAATGAAAGAATGTGCTACAAAATTAGTTGATCCTAATGAGGCAATGCAAGTGTTGACCGAGTACCGCACAAACCTGATGAAAGATCAGGAGATTGAAACTTATAGCTGCACAAGTTGGTGTAGGTTTCCTTTCTATGGAGCGGATTTCGGATGGGGAATGCCATCATGGGTGAGTTTTGCTGGTTGTTCAGTTAAGAATTTATTTGGTTTCATGGACAAAAGAGACTGCAATGGGATTGAAACATGGTTGACCCTAAGCGAAGAAAGCATGGCATTATTTGAAAGCAAACCGAAGCTGCTAGCATATGCTTCTCTGAATACAAGGGTCACTTGCTGA

Protein Analysis

473

Amino Acids

52.47

Weight (kDa)

7.13

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 28 - 459 1.8e-88 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1223
AccII CGCG 1 cut(s) 857
AciI CCGC 3 cut(s) 959, 1147, 1223
AclWI GGATC 2 cut(s) 174, 1106
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 4 cut(s) 145, 306, 383, 1279
AfaI GTAC 4 cut(s) 226, 247, 1024, 1145
AfiI CCNNNNNNNGG 3 cut(s) 332, 656, 1217
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 7 cut(s) 13, 89, 863, 1079, 1178, 1322, 1364
AluBI AGCT 6 cut(s) 154, 185, 380, 932, 1188, 1378
AluI AGCT 6 cut(s) 154, 185, 380, 932, 1188, 1378
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 1 cut(s) 1299
Alw44I GTGCAC 1 cut(s) 733
AlwI GGATC 2 cut(s) 174, 1106
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 5 cut(s) 66, 261, 911, 1011, 1068
ApaLI GTGCAC 1 cut(s) 733
ApeKI GCWGC 3 cut(s) 614, 1188, 1378
ApoI RAATTY 4 cut(s) 145, 306, 383, 1279
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 1 cut(s) 1068
AsuC2I CCSGG 2 cut(s) 1067, 1072
AsuHPI GGTGA 1 cut(s) 1264
AsuNHI GCTAGC 1 cut(s) 1381
BaeGI GKGCMC 2 cut(s) 737, 810
BalI TGGCCA 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 737
BbvI GCAGC 3 cut(s) 626, 1175, 1365
BccI CCATC 7 cut(s) 124, 272, 368, 715, 922, 1227, 1252
BciVI GTATCC 1 cut(s) 802
BcnI CCSGG 2 cut(s) 1067, 1072
BcoDI GTCTC 1 cut(s) 1299
BfaI CTAG 3 cut(s) 741, 900, 1382
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 802
BisI GCNGC 3 cut(s) 615, 1189, 1379
BlsI GCNGC 3 cut(s) 616, 1190, 1380
BmcAI AGTACT 3 cut(s) 226, 247, 1024
Bme1390I CCNGG 2 cut(s) 1067, 1072
BmgT120I GGNCC 1 cut(s) 1068
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 2 cut(s) 1067, 1072
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 5 cut(s) 292, 427, 568, 674, 875
BmtI GCTAGC 1 cut(s) 1385
BmuI ACTGGG 1 cut(s) 646
Bpu10I CCTNAGC 1 cut(s) 1337
BpuMI CCSGG 2 cut(s) 1067, 1072
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 656, 1217
Bse1I ACTGG 5 cut(s) 234, 652, 795, 905, 1029
Bse3DI GCAATG 2 cut(s) 1131, 1318
BseGI GGATG 6 cut(s) 26, 116, 189, 707, 881, 1238
BseLI CCNNNNNNNGG 3 cut(s) 332, 656, 1217
BseMI GCAATG 2 cut(s) 1131, 1318
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 5 cut(s) 234, 652, 795, 905, 1029
BseRI GAGGAG 1 cut(s) 120
BseSI GKGCMC 2 cut(s) 737, 810
BseXI GCAGC 3 cut(s) 626, 1175, 1365
BseYI CCCAGC 1 cut(s) 980
BsgI GTGCAG 1 cut(s) 1174
Bsh1236I CGCG 1 cut(s) 857
BshFI GGCC 5 cut(s) 68, 263, 913, 1013, 1070
BsiHKAI GWGCWC 1 cut(s) 737
BsiSI CCGG 2 cut(s) 1066, 1071
BslI CCNNNNNNNGG 3 cut(s) 332, 656, 1217
BsmAI GTCTC 1 cut(s) 1299
BsmI GAATGC 1 cut(s) 1245
BsnI GGCC 5 cut(s) 68, 263, 913, 1013, 1070
Bsp1286I GDGCHC 2 cut(s) 737, 810
Bsp143I GATC 4 cut(s) 166, 357, 1111, 1165
BspACI CCGC 3 cut(s) 959, 1147, 1223
BspANI GGCC 5 cut(s) 68, 263, 913, 1013, 1070
BspCNI CTCAG 1 cut(s) 466
BspFNI CGCG 1 cut(s) 857
BspLI GGNNCC 1 cut(s) 702
BspOI GCTAGC 1 cut(s) 1385
BspPI GGATC 2 cut(s) 174, 1106
BsrBI CCGCTC 1 cut(s) 1223
BsrDI GCAATG 2 cut(s) 1131, 1318
BsrI ACTGG 5 cut(s) 234, 652, 795, 905, 1029
BssMI GATC 4 cut(s) 166, 357, 1111, 1165
Bst4CI ACNGT 3 cut(s) 94, 109, 589
Bst6I CTCTTC 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 507, 1383
BstDEI CTNAG 3 cut(s) 140, 474, 1337
BstENI CCTNNNNNAGG 1 cut(s) 330
BstF5I GGATG 6 cut(s) 26, 116, 189, 707, 881, 1238
BstFNI CGCG 1 cut(s) 857
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 4 cut(s) 169, 360, 1114, 1168
BstMAI GTCTC 1 cut(s) 1299
BstMBI GATC 4 cut(s) 166, 357, 1111, 1165
BstMWI GCNNNNNNNGC 5 cut(s) 511, 620, 836, 863, 1347
BstSCI CCNGG 2 cut(s) 1065, 1070
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 2 cut(s) 737, 810
BstUI CGCG 1 cut(s) 857
BstV1I GCAGC 3 cut(s) 626, 1175, 1365
BstXI CCANNNNNNTGG 1 cut(s) 892
BsuI GTATCC 1 cut(s) 802
BsuRI GGCC 5 cut(s) 68, 263, 913, 1013, 1070
BtgZI GCGATG 1 cut(s) 852
BtsCI GGATG 6 cut(s) 26, 116, 189, 707, 881, 1238
BtsIMutI CAGTG 1 cut(s) 1036
Cac8I GCNNGC 2 cut(s) 507, 1383
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 857
Cfr13I GGNCC 1 cut(s) 1068
Csp6I GTAC 4 cut(s) 225, 246, 1023, 1144
CspCI CAANNNNNGTGG 2 cut(s) 804, 839
CviAII CATG 7 cut(s) 134, 398, 712, 1248, 1294, 1326, 1351
CviQI GTAC 4 cut(s) 225, 246, 1023, 1144
DdeI CTNAG 3 cut(s) 140, 474, 1337
DpnI GATC 4 cut(s) 168, 359, 1113, 1167
DpnII GATC 4 cut(s) 166, 357, 1111, 1165
DraI TTTAAA 1 cut(s) 1044
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco32I GATATC 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 383
EcoRV GATATC 1 cut(s) 278
FaeI CATG 7 cut(s) 137, 401, 715, 1251, 1297, 1329, 1354
FalI AAGNNNNNCTT 3 cut(s) 395, 427, 1396
FatI CATG 7 cut(s) 133, 397, 711, 1247, 1293, 1325, 1350
FauNDI CATATG 1 cut(s) 1387
Fnu4HI GCNGC 3 cut(s) 615, 1189, 1379
FokI GGATG 6 cut(s) 13, 103, 176, 694, 868, 1245
Fsp4HI GCNGC 3 cut(s) 615, 1189, 1379
FspBI CTAG 3 cut(s) 741, 900, 1382
GlaI GCGC 1 cut(s) 856
GluI GCNGC 3 cut(s) 615, 1189, 1379
GsaI CCCAGC 1 cut(s) 984
HaeIII GGCC 5 cut(s) 68, 263, 913, 1013, 1070
HapII CCGG 2 cut(s) 1066, 1071
HhaI GCGC 1 cut(s) 857
Hin1II CATG 7 cut(s) 137, 401, 715, 1251, 1297, 1329, 1354
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HincII GTYRAC 2 cut(s) 1137, 1332
HindII GTYRAC 2 cut(s) 1137, 1332
HinfI GANTC 6 cut(s) 74, 339, 476, 695, 761, 985
HpaII CCGG 2 cut(s) 1066, 1071
HphI GGTGA 1 cut(s) 1264
Hpy166II GTNNAC 6 cut(s) 480, 735, 800, 937, 1137, 1332
Hpy188I TCNGA 6 cut(s) 304, 418, 694, 700, 1232, 1398
Hpy188III TCNNGA 3 cut(s) 355, 388, 1169
Hpy8I GTNNAC 6 cut(s) 480, 735, 800, 937, 1137, 1332
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 209, 738
HpyCH4III ACNGT 3 cut(s) 94, 109, 589
HpyCH4IV ACGT 3 cut(s) 240, 596, 890
HpyCH4V TGCA 7 cut(s) 514, 594, 665, 735, 1129, 1191, 1311
HpyF10VI GCNNNNNNNGC 5 cut(s) 511, 620, 836, 863, 1347
HpyF3I CTNAG 3 cut(s) 140, 474, 1337
HpySE526I ACGT 3 cut(s) 240, 596, 890
Hsp92II CATG 7 cut(s) 137, 401, 715, 1251, 1297, 1329, 1354
HspAI GCGC 1 cut(s) 855
Kzo9I GATC 4 cut(s) 166, 357, 1111, 1165
LmnI GCTCC 3 cut(s) 377, 700, 1220
Lsp1109I GCAGC 3 cut(s) 626, 1175, 1365
LweI GCATC 5 cut(s) 292, 427, 568, 674, 875
MaeI CTAG 3 cut(s) 741, 900, 1382
MaeII ACGT 3 cut(s) 240, 596, 890
MaeIII GTNAC 5 cut(s) 22, 236, 490, 952, 1408
MalI GATC 4 cut(s) 168, 359, 1113, 1167
MbiI CCGCTC 1 cut(s) 1223
MboI GATC 4 cut(s) 166, 357, 1111, 1165
MboII GAAGA 6 cut(s) 196, 348, 980, 1028, 1091, 1355
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 2 cut(s) 737, 810
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 9 cut(s) 145, 306, 383, 465, 520, 604, 831, 1103, 1279
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 3 cut(s) 485, 689, 755
MmeI TCCRAC 3 cut(s) 657, 717, 909
MnlI CCTC 6 cut(s) 76, 130, 141, 530, 592, 1114
Mox20I TGGCCA 1 cut(s) 68
MscI TGGCCA 1 cut(s) 68
MseI TTAA 6 cut(s) 111, 150, 449, 723, 1043, 1275
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 68
MspI CCGG 2 cut(s) 1066, 1071
MspR9I CCNGG 2 cut(s) 1067, 1072
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 1245
MvnI CGCG 1 cut(s) 857
MwoI GCNNNNNNNGC 5 cut(s) 511, 620, 836, 863, 1347
NciI CCSGG 2 cut(s) 1067, 1072
NdeI CATATG 1 cut(s) 1387
NdeII GATC 4 cut(s) 166, 357, 1111, 1165
NheI GCTAGC 1 cut(s) 1381
NlaIII CATG 7 cut(s) 137, 401, 715, 1251, 1297, 1329, 1354
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 2 cut(s) 490, 1408
PctI GAATGC 1 cut(s) 1245
PfeI GAWTC 3 cut(s) 74, 339, 985
PkrI GCNGC 3 cut(s) 616, 1190, 1380
PleI GAGTC 3 cut(s) 484, 689, 755
PpsI GAGTC 3 cut(s) 484, 689, 755
PspFI CCCAGC 1 cut(s) 980
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 1 cut(s) 1068
PstNI CAGNNNCTG 1 cut(s) 440
RsaI GTAC 4 cut(s) 226, 247, 1024, 1145
RsaNI GTAC 4 cut(s) 225, 246, 1023, 1144
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 6 cut(s) 111, 150, 449, 723, 1043, 1275
SatI GCNGC 3 cut(s) 615, 1189, 1379
Sau3AI GATC 4 cut(s) 166, 357, 1111, 1165
Sau96I GGNCC 1 cut(s) 1068
ScaI AGTACT 3 cut(s) 226, 247, 1024
SchI GAGTC 3 cut(s) 485, 689, 755
ScrFI CCNGG 2 cut(s) 1067, 1072
SduI GDGCHC 2 cut(s) 737, 810
SfaNI GCATC 5 cut(s) 292, 427, 568, 674, 875
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 9 cut(s) 145, 306, 383, 465, 520, 604, 831, 1103, 1279
SsiI CCGC 3 cut(s) 959, 1147, 1223
SspMI CTAG 3 cut(s) 741, 900, 1382
StyD4I CCNGG 2 cut(s) 1065, 1070
TaaI ACNGT 3 cut(s) 94, 109, 589
TaiI ACGT 3 cut(s) 243, 599, 893
TaqI TCGA 1 cut(s) 81
TaqII GACCGA 1 cut(s) 1154
TasI AATT 9 cut(s) 145, 306, 383, 465, 520, 604, 831, 1103, 1279
TatI WGTACW 3 cut(s) 224, 245, 1022
TfiI GAWTC 3 cut(s) 74, 339, 985
Tru1I TTAA 6 cut(s) 111, 150, 449, 723, 1043, 1275
Tru9I TTAA 6 cut(s) 111, 150, 449, 723, 1043, 1275
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 2 cut(s) 490, 1408
TseI GCWGC 3 cut(s) 614, 1188, 1378
Tsp45I GTSAC 2 cut(s) 490, 1408
TspDTI ATGAA 6 cut(s) 285, 589, 914, 1100, 1175, 1282
TspGWI ACGGA 2 cut(s) 67, 763
TspRI CASTG 1 cut(s) 1036
VneI GTGCAC 1 cut(s) 733
XagI CCTNNNNNAGG 1 cut(s) 330
XapI RAATTY 4 cut(s) 145, 306, 383, 1279
XspI CTAG 3 cut(s) 741, 900, 1382
ZrmI AGTACT 3 cut(s) 226, 247, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.