RLG00000008056

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
25004394 .. 25005068
675 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008056

Sequence Viewer

Length: 576 bp
ATGAGGGTTGAAGTGATCGATAAGGAAATAGTTACACCATCATCTCCTACTCCTCACCACCTTACAACTTCCATCCTCTCTGTTTTTGACCAGTTTTTGCCAGACTTGTATGTCCCCCTACTTCTCTTCTATCCCAACAATAGTACTACTAATCATAAGGGCAATAAGGTTGATCACCACTACTCTTTCATTACCGAAAGATTCAAGCTTCTGAAAACTTCATTATCTGAAGCCCTCAGCCGTTTTTATCCCTTCGCAGGAAGAATATTTAGGCACAACAATATTCTTTTGATCTGTTGCAATGACCATGAATCAACATTTGAAAGCACAGGCTATCTCCTACTAGTCCAAGCCAACTTCTTCGAATGTGGCGGAATTGCAATTGGGGTTAGCATTTCACATAAGATCGCAGACGGCTTCACACTCGGAACATTTATCGGTAGCTGGGCAGCAATGGGCCTTGGCACTGATGTAGTAGATCTTCCAACTGCAGAATTTGGTGTTGCAGCATCTGTTTACCCACCACAAGATTTATCCATTAAGTCATTGCAAACTTCTGGGGAATATGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.18

Weight (kDa)

5.68

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 103 3.3e-15 Transferase family
Transferase PF02458 113 - 155 2.1e-12 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AciI CCGC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 11, 205, 323
AhlI ACTAGT 1 cut(s) 343
AluBI AGCT 2 cut(s) 208, 444
AluI AGCT 2 cut(s) 208, 444
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 449, 506
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 2 cut(s) 47, 167
AsuII TTCGAA 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 461, 518
BccI CCATC 2 cut(s) 46, 80
BceAI ACGGC 2 cut(s) 225, 430
BclI TGATCA 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 489
BglII AGATCT 1 cut(s) 478
BisI GCNGC 2 cut(s) 450, 507
BlsI GCNGC 2 cut(s) 451, 508
BmcAI AGTACT 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 457
BmsI GCATC 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 3 cut(s) 307, 459, 545
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 3 cut(s) 307, 459, 545
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 461, 518
BseYI CCCAGC 1 cut(s) 444
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 18
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 363
Bsp143I GATC 5 cut(s) 15, 172, 291, 405, 478
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 249
BspDI ATCGAT 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 363
BsrDI GCAATG 3 cut(s) 307, 459, 545
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 5 cut(s) 15, 172, 291, 405, 478
BssT1I CCWWGG 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 5 cut(s) 18, 175, 294, 408, 481
BstMBI GATC 5 cut(s) 15, 172, 291, 405, 478
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 461, 518
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 18
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 465
CaiI CAGNNNCTG 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 457
ClaI ATCGAT 1 cut(s) 18
Csp6I GTAC 1 cut(s) 144
CviAII CATG 1 cut(s) 308
CviJI RGCY 8 cut(s) 208, 233, 240, 333, 353, 417, 444, 459
CviKI_1 RGCY 8 cut(s) 208, 233, 240, 333, 353, 417, 444, 459
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 236
DpnI GATC 5 cut(s) 17, 174, 293, 407, 480
DpnII GATC 5 cut(s) 15, 172, 291, 405, 478
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 1 cut(s) 311
FaiI YATR 5 cut(s) 111, 156, 309, 402, 567
FaqI GGGAC 1 cut(s) 98
FatI CATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 450, 507
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 450, 507
FspBI CTAG 1 cut(s) 344
GluI GCNGC 2 cut(s) 450, 507
GsaI CCCAGC 1 cut(s) 448
HaeIII GGCC 1 cut(s) 459
Hin1II CATG 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 2 cut(s) 201, 311
HphI GGTGA 2 cut(s) 47, 167
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 3 cut(s) 213, 229, 428
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 1 cut(s) 262
HpyCH4V TGCA 5 cut(s) 300, 380, 491, 506, 550
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 5 cut(s) 15, 172, 291, 405, 478
LpnPI CCDG 6 cut(s) 104, 114, 243, 315, 430, 543
Lsp1109I GCAGC 2 cut(s) 461, 518
LweI GCATC 1 cut(s) 518
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 31
MalI GATC 5 cut(s) 17, 174, 293, 407, 480
MboI GATC 5 cut(s) 15, 172, 291, 405, 478
MboII GAAGA 4 cut(s) 118, 273, 352, 473
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 1 cut(s) 478
MluCI AATT 3 cut(s) 375, 381, 494
MmeI TCCRAC 1 cut(s) 509
MnlI CCTC 3 cut(s) 63, 86, 245
MseI TTAA 2 cut(s) 540, 574
MunI CAATTG 1 cut(s) 381
NdeII GATC 5 cut(s) 15, 172, 291, 405, 478
NlaIII CATG 1 cut(s) 311
NspV TTCGAA 1 cut(s) 363
PfeI GAWTC 2 cut(s) 201, 311
PkrI GCNGC 2 cut(s) 451, 508
PspFI CCCAGC 1 cut(s) 444
PspPI GGNCC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 540, 574
SatI GCNGC 2 cut(s) 450, 507
Sau3AI GATC 5 cut(s) 15, 172, 291, 405, 478
Sau96I GGNCC 1 cut(s) 457
ScaI AGTACT 1 cut(s) 145
SetI ASST 4 cut(s) 63, 171, 210, 446
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 363
SpeI ACTAGT 1 cut(s) 343
Sse9I AATT 3 cut(s) 375, 381, 494
SsiI CCGC 1 cut(s) 372
SspI AATATT 2 cut(s) 267, 283
SspMI CTAG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 460
TaqI TCGA 2 cut(s) 18, 363
TasI AATT 3 cut(s) 375, 381, 494
TatI WGTACW 1 cut(s) 143
TfiI GAWTC 2 cut(s) 201, 311
Tru1I TTAA 2 cut(s) 540, 574
Tru9I TTAA 2 cut(s) 540, 574
TscAI CASTG 1 cut(s) 472
TseI GCWGC 2 cut(s) 449, 506
TspDTI ATGAA 3 cut(s) 178, 210, 324
TspRI CASTG 1 cut(s) 472
XapI RAATTY 1 cut(s) 494
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.